Wall clock time and date at job start Tue Mar 31 2020 06:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86803 * 120.00301 * 2 1 4 4 H 1.48501 * 109.46852 * 269.99443 * 3 2 1 5 5 H 1.48496 * 109.47062 * 29.99046 * 3 2 1 6 6 H 1.48497 * 109.47338 * 149.99473 * 3 2 1 7 7 C 1.38636 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99516 * 180.02562 * 7 2 1 9 9 O 1.34807 * 120.00070 * 0.02562 * 7 2 1 10 10 C 1.35783 * 117.00083 * 185.39488 * 9 7 2 11 11 C 1.38899 * 119.99820 * 5.92473 * 10 9 7 12 12 C 1.38013 * 120.00063 * 179.97438 * 11 10 9 13 13 C 1.38911 * 119.99524 * 0.02562 * 12 11 10 14 14 N 1.40026 * 119.99507 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00466 * 33.66832 * 14 13 12 16 16 O 1.21594 * 119.99910 * 5.25658 * 15 14 13 17 17 N 1.34771 * 120.00460 * 185.26082 * 15 14 13 18 18 C 1.46498 * 120.00380 * 179.97438 * 17 15 14 19 19 C 1.54632 * 111.03723 * 267.02105 * 18 17 15 20 20 C 1.51105 * 104.72554 * 217.32921 * 19 18 17 21 21 C 1.30528 * 111.10294 * 16.44061 * 20 19 18 22 22 C 1.51101 * 111.10485 * 359.97438 * 21 20 19 23 23 C 1.38904 * 119.99914 * 0.27937 * 13 12 11 24 24 C 1.38009 * 120.00352 * 359.45777 * 23 13 12 25 25 H 0.97003 * 119.99740 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00011 * 359.97438 * 11 10 9 27 27 H 1.08000 * 119.99771 * 179.97438 * 12 11 10 28 28 H 0.97006 * 120.00148 * 213.66861 * 14 13 12 29 29 H 0.97003 * 120.00169 * 359.97438 * 17 15 14 30 30 H 1.09001 * 110.91262 * 31.03452 * 18 17 15 31 31 H 1.08996 * 110.38809 * 336.14722 * 19 18 17 32 32 H 1.09009 * 110.38625 * 98.52205 * 19 18 17 33 33 H 1.07997 * 124.44781 * 196.45205 * 20 19 18 34 34 H 1.07997 * 124.44735 * 180.02562 * 21 20 19 35 35 H 1.09000 * 110.38638 * 224.75385 * 22 21 20 36 36 H 1.09001 * 110.48548 * 102.42487 * 22 21 20 37 37 H 1.08008 * 119.99957 * 179.70054 * 23 13 12 38 38 H 1.07998 * 120.00291 * 180.23417 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4975 2.0463 -1.4001 5 1 1.4473 2.6527 0.6998 6 1 3.5473 1.4402 0.7001 7 6 2.0089 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3348 -2.3681 0.0005 10 6 2.0697 -3.5042 0.1148 11 6 3.4367 -3.4265 0.3482 12 6 4.1835 -4.5812 0.4649 13 6 3.5681 -5.8211 0.3484 14 7 4.3259 -6.9926 0.4663 15 6 5.3825 -7.0306 1.3021 16 8 5.6209 -6.0817 2.0241 17 7 6.1748 -8.1202 1.3377 18 6 7.3237 -8.1613 2.2458 19 6 8.6088 -7.6735 1.5375 20 6 9.7064 -8.5584 2.0811 21 6 9.2120 -9.6194 2.6587 22 6 7.7022 -9.6187 2.5971 23 6 2.2021 -5.8986 0.1087 24 6 1.4543 -4.7440 -0.0026 25 1 -0.4850 0.8401 -0.0004 26 1 3.9152 -2.4625 0.4383 27 1 5.2465 -4.5208 0.6459 28 1 4.0904 -7.7770 -0.0537 29 1 5.9845 -8.8774 0.7619 30 1 7.1282 -7.5802 3.1470 31 1 8.5189 -7.7993 0.4586 32 1 8.8054 -6.6300 1.7839 33 1 10.7614 -8.3414 2.0023 34 1 9.8042 -10.3954 3.1206 35 1 7.2826 -9.8981 3.5635 36 1 7.3518 -10.2990 1.8209 37 1 1.7243 -6.8626 0.0133 38 1 0.3916 -4.8043 -0.1852 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326433934.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:39 Heat of formation + Delta-G solvation = -26.967122 kcal Electronic energy + Delta-G solvation = -21504.857950 eV Core-core repulsion = 18119.729653 eV Total energy + Delta-G solvation = -3385.128297 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.70632 -40.58280 -39.45805 -38.09114 -35.43645 -34.80104 -34.08418 -31.84290 -29.90154 -29.14088 -28.35961 -27.18035 -24.09532 -23.40990 -21.93287 -21.71705 -20.15152 -19.75194 -19.36087 -18.86022 -18.13913 -16.98549 -16.76273 -16.60053 -16.23707 -15.81229 -15.51091 -15.35667 -15.19832 -14.64479 -14.26349 -13.83213 -13.72818 -13.59629 -13.28741 -13.21455 -13.04676 -12.91142 -12.66227 -12.47566 -12.38226 -12.13403 -12.09859 -11.47450 -11.29216 -11.01650 -10.55494 -10.11889 -9.82565 -9.79703 -8.54988 -8.46381 -6.12552 0.54126 0.59823 1.35036 1.36785 1.43307 1.52179 1.60367 2.08357 2.18601 2.84429 3.17568 3.21452 3.53312 3.62812 3.74962 4.09611 4.13327 4.14458 4.37491 4.46918 4.50161 4.66399 4.72624 4.76873 4.83159 4.93565 5.00144 5.06596 5.08518 5.14663 5.35945 5.42306 5.54237 5.62069 5.63260 5.72009 5.96704 6.01745 6.04555 6.20509 6.98645 7.05846 7.54359 7.78737 8.76696 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.028846 B = 0.002942 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.433003 B = 9516.003873 C =10333.937920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.016 2.984 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.412 4.412 8 H 0.096 0.904 9 O -0.228 6.228 10 C 0.104 3.896 11 C -0.226 4.226 12 C -0.077 4.077 13 C 0.084 3.916 14 N -0.661 5.661 15 C 0.696 3.304 16 O -0.622 6.622 17 N -0.715 5.715 18 C 0.152 3.848 19 C -0.117 4.117 20 C -0.172 4.172 21 C -0.160 4.160 22 C -0.099 4.099 23 C -0.079 4.079 24 C -0.177 4.177 25 H 0.273 0.727 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.423 0.577 29 H 0.416 0.584 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.136 0.864 34 H 0.148 0.852 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.168 0.832 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.272 -22.609 1.203 27.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.219 4.219 3 Si 0.835 3.165 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.489 4.489 8 H 0.113 0.887 9 O -0.134 6.134 10 C 0.053 3.947 11 C -0.246 4.246 12 C -0.098 4.098 13 C -0.010 4.010 14 N -0.311 5.311 15 C 0.397 3.603 16 O -0.501 6.501 17 N -0.371 5.371 18 C 0.046 3.954 19 C -0.156 4.156 20 C -0.191 4.191 21 C -0.178 4.178 22 C -0.137 4.137 23 C -0.099 4.099 24 C -0.197 4.197 25 H 0.082 0.918 26 H 0.133 0.867 27 H 0.137 0.863 28 H 0.262 0.738 29 H 0.253 0.747 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.154 0.846 34 H 0.166 0.834 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.185 0.815 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 16.111 -21.637 1.829 27.038 hybrid contribution 0.061 0.634 -0.393 0.749 sum 16.172 -21.003 1.436 26.546 Atomic orbital electron populations 1.70178 1.07829 1.28757 1.48893 1.26521 0.96872 1.02540 0.95931 0.84629 0.77698 0.74825 0.79329 1.18583 1.19367 1.18209 1.21741 0.92316 0.81666 1.53133 0.88683 1.83943 1.35493 1.12405 1.81598 1.19929 0.91159 0.88392 0.95212 1.21062 0.93962 0.99106 1.10473 1.20782 0.99459 0.91049 0.98464 1.17130 0.90515 0.85245 1.08123 1.42099 1.29525 1.14374 1.45102 1.16167 0.80234 0.83593 0.80324 1.90947 1.74723 1.38056 1.46422 1.44855 1.29055 1.18001 1.45224 1.21672 0.83650 0.98111 0.91930 1.21804 0.93647 0.99335 1.00805 1.23308 0.99300 0.96532 0.99914 1.23379 0.95577 0.98963 0.99908 1.21599 0.94374 0.94114 1.03589 1.20734 0.90563 0.98479 1.00147 1.20321 1.00648 0.89262 1.09482 0.91803 0.86750 0.86300 0.73806 0.74671 0.90605 0.90060 0.92706 0.84598 0.83424 0.89572 0.88004 0.81455 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.10 13.67 21.61 0.30 -56.81 16 2 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 3 Si 1.02 44.32 29.55 68.60 2.03 46.35 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.41 -24.80 9.44 67.91 0.64 -24.16 16 8 H 0.10 5.37 5.29 -2.91 -0.02 5.36 16 9 O -0.23 -13.96 9.75 -22.88 -0.22 -14.18 16 10 C 0.10 5.31 6.65 22.59 0.15 5.46 16 11 C -0.23 -10.84 9.13 22.37 0.20 -10.64 16 12 C -0.08 -3.19 8.65 22.38 0.19 -2.99 16 13 C 0.08 2.85 6.28 38.15 0.24 3.09 16 14 N -0.66 -15.96 5.35 -317.05 -1.70 -17.66 16 15 C 0.70 18.91 8.30 179.06 1.49 20.40 16 16 O -0.62 -23.74 13.69 -4.01 -0.05 -23.79 16 17 N -0.72 -12.28 5.16 -452.52 -2.33 -14.61 16 18 C 0.15 2.69 3.53 46.10 0.16 2.85 16 19 C -0.12 -2.07 6.55 30.53 0.20 -1.87 16 20 C -0.17 -2.28 10.78 26.26 0.28 -2.00 16 21 C -0.16 -1.69 10.78 26.26 0.28 -1.40 16 22 C -0.10 -1.04 6.54 30.53 0.20 -0.84 16 23 C -0.08 -2.54 9.95 22.37 0.22 -2.31 16 24 C -0.18 -7.37 9.99 22.38 0.22 -7.15 16 25 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 26 H 0.11 5.69 5.71 -2.91 -0.02 5.67 16 27 H 0.12 4.96 6.43 -2.91 -0.02 4.95 16 28 H 0.42 6.05 8.83 -92.70 -0.82 5.23 16 29 H 0.42 3.77 8.45 -92.71 -0.78 2.99 16 30 H 0.08 1.80 7.54 -2.39 -0.02 1.79 16 31 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 32 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 35 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 0.67 7.80 -2.39 -0.02 0.65 16 37 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 38 H 0.13 5.11 8.06 -2.91 -0.02 5.09 16 Total: -1.00 -80.25 325.50 2.48 -77.77 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.49 Total: 25.26 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 4.95 Total: -22.34 kcal Atomic # 7 Polarization: -85.34 SS G_CDS: -3.73 Total: -89.08 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -0.28 Total: -37.97 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -80.25 2.48 -77.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326433934.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.807 kcal (2) G-P(sol) polarization free energy of solvation -80.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds