Wall clock time and date at job start Tue Mar 31 2020 06:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86799 * 120.00397 * 2 1 4 4 H 1.48496 * 109.47052 * 270.00343 * 3 2 1 5 5 H 1.48504 * 109.46638 * 30.00442 * 3 2 1 6 6 H 1.48500 * 109.47531 * 150.00150 * 3 2 1 7 7 C 1.40035 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00086 * 180.02562 * 7 2 1 9 9 C 1.41311 * 119.99739 * 359.97438 * 7 2 1 10 10 C 1.40590 * 119.78074 * 179.97438 * 9 7 2 11 11 C 1.38352 * 119.14558 * 180.02562 * 10 9 7 12 12 C 1.38639 * 118.68099 * 359.74395 * 11 10 9 13 13 C 1.39758 * 119.48915 * 0.50702 * 12 11 10 14 14 N 1.38830 * 119.58069 * 179.76195 * 13 12 11 15 15 C 1.48615 * 111.00154 * 297.16885 * 14 13 12 16 16 C 1.55154 * 103.35482 * 200.82395 * 15 14 13 17 17 C 1.53660 * 102.67244 * 36.62129 * 16 15 14 18 18 C 1.53550 * 110.77836 * 99.32869 * 17 16 15 19 19 C 1.54792 * 101.82970 * 105.90115 * 18 17 16 20 20 O 1.45936 * 104.51645 * 26.16431 * 19 18 17 21 21 C 1.34394 * 109.92516 * 329.99919 * 20 19 18 22 22 O 1.20827 * 125.29706 * 200.24055 * 21 20 19 23 23 C 1.48168 * 110.99858 * 179.71898 * 14 13 12 24 24 N 1.31974 * 120.83365 * 359.48212 * 13 12 11 25 25 H 0.97001 * 119.99682 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.43056 * 0.05155 * 10 9 7 27 27 H 1.08004 * 120.65743 * 180.02562 * 11 10 9 28 28 H 1.07997 * 120.25474 * 180.26662 * 12 11 10 29 29 H 1.09002 * 110.64628 * 319.28996 * 15 14 13 30 30 H 1.09000 * 110.64693 * 82.35893 * 15 14 13 31 31 H 1.09005 * 110.76949 * 278.33215 * 16 15 14 32 32 H 1.08992 * 110.77325 * 154.92222 * 16 15 14 33 33 H 1.09004 * 110.95946 * 347.76107 * 18 17 16 34 34 H 1.09006 * 110.95354 * 224.03220 * 18 17 16 35 35 H 1.08998 * 110.42821 * 267.40431 * 19 18 17 36 36 H 1.09002 * 110.53263 * 144.97750 * 19 18 17 37 37 H 1.09002 * 110.01211 * 26.36048 * 23 14 13 38 38 H 1.09001 * 110.02444 * 264.97186 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4000 5 1 1.4390 2.6526 0.7002 6 1 3.5391 1.4401 0.7000 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2128 -0.0001 9 6 1.3009 -2.4365 -0.0005 10 6 2.0084 -3.6514 -0.0016 11 6 1.3033 -4.8418 -0.0022 12 6 -0.0822 -4.7944 0.0038 13 6 -0.7283 -3.5551 -0.0005 14 7 -2.1157 -3.5055 0.0005 15 6 -2.6717 -4.1244 -1.2310 16 6 -4.0967 -3.5179 -1.3250 17 6 -3.8850 -2.0808 -0.8240 18 6 -3.7689 -1.1043 -2.0034 19 6 -5.1383 -0.3842 -1.9551 20 8 -5.5548 -0.4833 -0.5600 21 6 -5.0580 -1.6056 -0.0123 22 8 -5.4845 -2.1458 0.9808 23 6 -2.5969 -2.1041 0.0021 24 7 -0.0361 -2.4314 0.0000 25 1 -0.4850 0.8401 0.0004 26 1 3.0884 -3.6555 -0.0016 27 1 1.8220 -5.7891 -0.0026 28 1 -0.6579 -5.7081 0.0079 29 1 -2.0779 -3.8474 -2.1021 30 1 -2.7215 -5.2084 -1.1275 31 1 -4.7890 -4.0551 -0.6767 32 1 -4.4503 -3.5198 -2.3559 33 1 -3.6438 -1.6416 -2.9435 34 1 -2.9521 -0.3996 -1.8471 35 1 -5.8559 -0.8876 -2.6030 36 1 -5.0313 0.6606 -2.2469 37 1 -1.8503 -1.4528 -0.4526 38 1 -2.8023 -1.7812 1.0227 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354354546.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:55 Heat of formation + Delta-G solvation = -25.676391 kcal Electronic energy + Delta-G solvation = -23442.964733 eV Core-core repulsion = 20057.892407 eV Total energy + Delta-G solvation = -3385.072326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.30610 -39.00103 -37.25584 -37.08760 -33.89498 -32.87340 -30.74213 -30.12420 -28.51338 -28.20185 -25.74417 -23.92153 -22.73155 -21.96210 -21.33840 -20.05556 -19.47667 -17.65184 -16.87005 -16.65308 -16.10970 -15.68590 -14.94596 -14.81836 -14.53213 -14.36521 -13.92293 -13.51883 -13.32065 -13.19090 -12.59751 -12.42945 -12.12063 -12.00635 -11.79414 -11.52880 -11.37506 -11.18446 -11.12433 -10.86951 -10.76322 -10.66426 -10.52870 -10.43908 -10.08272 -9.72923 -9.49398 -8.73960 -8.12056 -7.66335 -7.06992 -6.53102 -4.60655 2.23535 2.64907 2.92954 3.03425 3.06206 3.15106 3.32956 3.87169 4.06534 4.28220 4.49020 4.56552 4.71064 4.92330 4.92910 5.08069 5.37377 5.49515 5.60206 5.71738 5.80126 5.84678 5.93057 6.05291 6.08118 6.22144 6.39340 6.45038 6.60587 6.72783 6.78384 6.86980 7.02783 7.15930 7.29424 7.56013 7.66695 7.71667 7.75046 8.09601 8.28386 8.61992 8.90085 9.97298 10.20700 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.006748 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.483393 B = 4148.461373 C = 5606.697294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.430 4.430 8 H 0.084 0.916 9 C 0.275 3.725 10 C -0.291 4.291 11 C -0.046 4.046 12 C -0.312 4.312 13 C 0.310 3.690 14 N -0.462 5.462 15 C 0.054 3.946 16 C -0.103 4.103 17 C -0.140 4.140 18 C -0.146 4.146 19 C 0.055 3.945 20 O -0.352 6.352 21 C 0.500 3.500 22 O -0.448 6.448 23 C 0.059 3.941 24 N -0.509 5.509 25 H 0.271 0.729 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.135 0.865 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.046 -0.019 -7.538 10.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.151 4.151 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.462 4.462 8 H 0.102 0.898 9 C 0.148 3.852 10 C -0.314 4.314 11 C -0.071 4.071 12 C -0.337 4.337 13 C 0.073 3.927 14 N -0.181 5.181 15 C -0.073 4.073 16 C -0.142 4.142 17 C -0.142 4.142 18 C -0.183 4.183 19 C -0.019 4.019 20 O -0.269 6.269 21 C 0.339 3.661 22 O -0.331 6.331 23 C -0.068 4.068 24 N -0.227 5.227 25 H 0.082 0.918 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.127 0.873 37 H 0.152 0.848 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.178 0.557 -6.483 10.450 hybrid contribution 1.192 0.197 -0.575 1.339 sum -6.985 0.754 -7.058 9.959 Atomic orbital electron populations 1.69999 1.07253 1.27535 1.29769 1.26015 0.94878 1.00999 0.93167 0.86327 0.80571 0.80774 0.79162 1.19465 1.20100 1.18567 1.19594 0.94275 0.89303 1.43026 0.89818 1.18323 0.87310 0.92009 0.87512 1.21665 0.98675 0.93448 1.17567 1.20732 0.93591 0.96658 0.96071 1.20684 0.94248 0.95912 1.22821 1.19913 0.88585 0.90601 0.93622 1.62092 1.06318 1.15513 1.34156 1.23149 0.93065 0.99820 0.91222 1.22483 0.98397 0.92219 1.01055 1.22288 0.97228 0.97801 0.96922 1.23122 0.97965 0.98757 0.98479 1.24153 0.95786 1.03283 0.78694 1.87085 1.71087 1.41615 1.27121 1.22692 0.82118 0.77594 0.83660 1.90688 1.63381 1.54897 1.24089 1.22894 0.92163 0.91607 1.00176 1.68479 1.07979 1.24934 1.21309 0.91780 0.88371 0.88472 0.88603 0.93012 0.89727 0.89893 0.90288 0.88669 0.87988 0.90044 0.87315 0.84793 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.60 10.21 55.55 0.57 -17.03 16 2 C 0.07 1.77 5.50 -17.34 -0.10 1.67 16 3 Si 0.91 17.79 29.56 -169.99 -5.02 12.77 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.43 -11.02 9.14 -37.74 -0.34 -11.36 16 8 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 9 C 0.27 7.26 6.55 -85.00 -0.56 6.70 16 10 C -0.29 -7.02 9.83 -38.65 -0.38 -7.40 16 11 C -0.05 -1.02 10.15 -39.39 -0.40 -1.42 16 12 C -0.31 -7.05 9.48 -38.87 -0.37 -7.42 16 13 C 0.31 7.40 6.21 -155.31 -0.96 6.44 16 14 N -0.46 -9.65 5.30 -169.36 -0.90 -10.55 16 15 C 0.05 0.90 6.07 -1.73 -0.01 0.88 16 16 C -0.10 -1.44 6.12 -25.25 -0.15 -1.59 16 17 C -0.14 -2.19 0.85 -155.18 -0.13 -2.32 16 18 C -0.15 -1.78 6.31 -25.50 -0.16 -1.94 16 19 C 0.06 0.57 7.92 38.10 0.30 0.87 16 20 O -0.35 -5.31 11.07 -39.33 -0.44 -5.75 16 21 C 0.50 8.59 7.02 35.84 0.25 8.84 16 22 O -0.45 -9.14 17.84 -18.38 -0.33 -9.47 16 23 C 0.06 1.19 5.70 -3.10 -0.02 1.17 16 24 N -0.51 -13.23 5.79 -10.33 -0.06 -13.29 16 25 H 0.27 5.99 8.29 -40.82 -0.34 5.66 16 26 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 27 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 28 H 0.10 1.97 8.05 -52.49 -0.42 1.55 16 29 H 0.05 0.87 7.99 -51.93 -0.41 0.46 16 30 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.08 1.20 7.79 -51.93 -0.40 0.79 16 32 H 0.08 0.83 7.52 -51.93 -0.39 0.44 16 33 H 0.09 0.96 7.48 -51.93 -0.39 0.57 16 34 H 0.10 1.40 7.40 -51.93 -0.38 1.01 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.13 2.97 4.34 -51.93 -0.23 2.74 16 38 H 0.07 1.63 7.73 -51.93 -0.40 1.23 16 LS Contribution 312.92 15.07 4.72 4.72 Total: -1.00 -29.99 312.92 -9.19 -39.18 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -4.69 Total: 6.30 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -3.03 Total: -6.88 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: -0.39 Total: -40.87 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.76 Total: -15.21 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.02 Total: 12.77 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.99 -9.19 -39.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354354546.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.503 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds