Wall clock time and date at job start Tue Mar 31 2020 06:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86799 * 120.00397 * 2 1 4 4 H 1.48496 * 109.47052 * 270.00343 * 3 2 1 5 5 H 1.48504 * 109.46638 * 30.00442 * 3 2 1 6 6 H 1.48500 * 109.47531 * 150.00150 * 3 2 1 7 7 C 1.40035 * 119.99824 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00086 * 180.02562 * 7 2 1 9 9 C 1.41311 * 119.99739 * 359.97438 * 7 2 1 10 10 C 1.40590 * 119.78074 * 179.97438 * 9 7 2 11 11 C 1.38352 * 119.14558 * 180.02562 * 10 9 7 12 12 C 1.38639 * 118.68099 * 359.74395 * 11 10 9 13 13 C 1.39758 * 119.48915 * 0.50702 * 12 11 10 14 14 N 1.38830 * 119.58069 * 179.76195 * 13 12 11 15 15 C 1.48615 * 111.00154 * 297.16885 * 14 13 12 16 16 C 1.55154 * 103.35482 * 200.82395 * 15 14 13 17 17 C 1.53660 * 102.67244 * 36.62129 * 16 15 14 18 18 C 1.53550 * 110.77836 * 99.32869 * 17 16 15 19 19 C 1.54792 * 101.82970 * 105.90115 * 18 17 16 20 20 O 1.45936 * 104.51645 * 26.16431 * 19 18 17 21 21 C 1.34394 * 109.92516 * 329.99919 * 20 19 18 22 22 O 1.20827 * 125.29706 * 200.24055 * 21 20 19 23 23 C 1.48168 * 110.99858 * 179.71898 * 14 13 12 24 24 N 1.31974 * 120.83365 * 359.48212 * 13 12 11 25 25 H 0.97001 * 119.99682 * 359.97438 * 1 2 3 26 26 H 1.07997 * 120.43056 * 0.05155 * 10 9 7 27 27 H 1.08004 * 120.65743 * 180.02562 * 11 10 9 28 28 H 1.07997 * 120.25474 * 180.26662 * 12 11 10 29 29 H 1.09002 * 110.64628 * 319.28996 * 15 14 13 30 30 H 1.09000 * 110.64693 * 82.35893 * 15 14 13 31 31 H 1.09005 * 110.76949 * 278.33215 * 16 15 14 32 32 H 1.08992 * 110.77325 * 154.92222 * 16 15 14 33 33 H 1.09004 * 110.95946 * 347.76107 * 18 17 16 34 34 H 1.09006 * 110.95354 * 224.03220 * 18 17 16 35 35 H 1.08998 * 110.42821 * 267.40431 * 19 18 17 36 36 H 1.09002 * 110.53263 * 144.97750 * 19 18 17 37 37 H 1.09002 * 110.01211 * 26.36048 * 23 14 13 38 38 H 1.09001 * 110.02444 * 264.97186 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4000 5 1 1.4390 2.6526 0.7002 6 1 3.5391 1.4401 0.7000 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2128 -0.0001 9 6 1.3009 -2.4365 -0.0005 10 6 2.0084 -3.6514 -0.0016 11 6 1.3033 -4.8418 -0.0022 12 6 -0.0822 -4.7944 0.0038 13 6 -0.7283 -3.5551 -0.0005 14 7 -2.1157 -3.5055 0.0005 15 6 -2.6717 -4.1244 -1.2310 16 6 -4.0967 -3.5179 -1.3250 17 6 -3.8850 -2.0808 -0.8240 18 6 -3.7689 -1.1043 -2.0034 19 6 -5.1383 -0.3842 -1.9551 20 8 -5.5548 -0.4833 -0.5600 21 6 -5.0580 -1.6056 -0.0123 22 8 -5.4845 -2.1458 0.9808 23 6 -2.5969 -2.1041 0.0021 24 7 -0.0361 -2.4314 0.0000 25 1 -0.4850 0.8401 0.0004 26 1 3.0884 -3.6555 -0.0016 27 1 1.8220 -5.7891 -0.0026 28 1 -0.6579 -5.7081 0.0079 29 1 -2.0779 -3.8474 -2.1021 30 1 -2.7215 -5.2084 -1.1275 31 1 -4.7890 -4.0551 -0.6767 32 1 -4.4503 -3.5198 -2.3559 33 1 -3.6438 -1.6416 -2.9435 34 1 -2.9521 -0.3996 -1.8471 35 1 -5.8559 -0.8876 -2.6030 36 1 -5.0313 0.6606 -2.2469 37 1 -1.8503 -1.4528 -0.4526 38 1 -2.8023 -1.7812 1.0227 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354354546.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:55 Heat of formation + Delta-G solvation = -43.276943 kcal Electronic energy + Delta-G solvation = -23443.727950 eV Core-core repulsion = 20057.892407 eV Total energy + Delta-G solvation = -3385.835544 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.56944 -40.63689 -38.67612 -38.57517 -35.61683 -34.35638 -32.44018 -31.61276 -29.95218 -29.62342 -27.49633 -25.34706 -23.99502 -23.37296 -22.97992 -21.68506 -20.80088 -19.41310 -18.12016 -18.01908 -17.58742 -17.03156 -16.45104 -16.42737 -16.28850 -15.64726 -15.40647 -14.95958 -14.77897 -14.70981 -14.08751 -13.83809 -13.45274 -13.36895 -13.19198 -12.89058 -12.83415 -12.75868 -12.67404 -12.63545 -12.28438 -12.18477 -11.82634 -11.78274 -11.43633 -11.23334 -11.07041 -10.45799 -9.94587 -9.49300 -8.82750 -8.31938 -6.50767 0.86405 0.91724 1.16559 1.41592 1.52414 1.54440 2.20295 2.22415 2.77877 2.84994 2.99748 3.33163 3.40902 3.75632 3.84730 3.90520 4.17801 4.21932 4.35535 4.40869 4.56316 4.63220 4.68186 4.76772 4.82522 4.85792 4.92646 4.93341 4.98452 5.06770 5.12617 5.24903 5.42172 5.61673 5.70405 5.82447 5.90479 5.99524 6.26156 6.35076 6.47394 6.77846 7.04002 8.13415 8.42839 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.014531 B = 0.006748 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.483393 B = 4148.461373 C = 5606.697294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.032 3.968 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.262 1.262 7 C -0.464 4.464 8 H 0.086 0.914 9 C 0.241 3.759 10 C -0.315 4.315 11 C -0.042 4.042 12 C -0.318 4.318 13 C 0.296 3.704 14 N -0.476 5.476 15 C 0.053 3.947 16 C -0.091 4.091 17 C -0.136 4.136 18 C -0.139 4.139 19 C 0.055 3.945 20 O -0.364 6.364 21 C 0.501 3.499 22 O -0.493 6.493 23 C 0.064 3.936 24 N -0.532 5.532 25 H 0.278 0.722 26 H 0.107 0.893 27 H 0.133 0.867 28 H 0.117 0.883 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.881 0.076 -9.703 12.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.190 4.190 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.186 1.186 7 C -0.495 4.495 8 H 0.104 0.896 9 C 0.114 3.886 10 C -0.338 4.338 11 C -0.066 4.066 12 C -0.343 4.343 13 C 0.059 3.941 14 N -0.196 5.196 15 C -0.073 4.073 16 C -0.129 4.129 17 C -0.138 4.138 18 C -0.177 4.177 19 C -0.017 4.017 20 O -0.281 6.281 21 C 0.343 3.657 22 O -0.378 6.378 23 C -0.064 4.064 24 N -0.251 5.251 25 H 0.088 0.912 26 H 0.125 0.875 27 H 0.151 0.849 28 H 0.135 0.865 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.099 0.901 35 H 0.138 0.862 36 H 0.153 0.847 37 H 0.133 0.867 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.024 0.641 -8.681 12.538 hybrid contribution 1.413 0.117 0.108 1.422 sum -7.611 0.758 -8.572 11.488 Atomic orbital electron populations 1.70095 1.08496 1.28732 1.29492 1.26837 0.95750 1.03992 0.92448 0.85202 0.78920 0.76092 0.79470 1.18415 1.19593 1.18553 1.19908 0.94649 0.90318 1.44629 0.89588 1.18810 0.88075 0.93318 0.88348 1.21844 0.99320 0.93691 1.18899 1.21111 0.93633 0.97526 0.94342 1.21000 0.94778 0.96284 1.22201 1.20370 0.89887 0.90770 0.93120 1.62078 1.04888 1.16022 1.36592 1.23289 0.94212 1.00596 0.89160 1.22532 0.96530 0.90151 1.03666 1.22233 0.94122 1.00199 0.97291 1.23117 0.98622 0.97860 0.98065 1.24601 0.95222 1.05351 0.76575 1.87064 1.71066 1.40275 1.29689 1.22906 0.82108 0.77642 0.83042 1.90652 1.64698 1.56573 1.25895 1.22656 0.94160 0.91096 0.98473 1.68493 1.08048 1.26199 1.22333 0.91181 0.87465 0.84884 0.86455 0.93143 0.88191 0.90395 0.85517 0.85539 0.90069 0.86177 0.84707 0.86665 0.95065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -37.43 10.21 21.84 0.22 -37.21 16 2 C 0.03 1.56 5.50 85.29 0.47 2.03 16 3 Si 0.98 36.83 29.56 68.60 2.03 38.86 16 4 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 5 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 6 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 7 C -0.46 -24.50 9.14 23.46 0.21 -24.28 16 8 H 0.09 4.30 7.85 -2.91 -0.02 4.27 16 9 C 0.24 13.13 6.55 40.19 0.26 13.40 16 10 C -0.31 -15.43 9.83 22.87 0.22 -15.20 16 11 C -0.04 -1.83 10.15 22.39 0.23 -1.60 16 12 C -0.32 -14.21 9.48 22.73 0.22 -13.99 16 13 C 0.30 14.36 6.21 133.40 0.83 15.19 16 14 N -0.48 -20.15 5.30 -689.73 -3.66 -23.80 16 15 C 0.05 1.67 6.07 86.71 0.53 2.19 16 16 C -0.09 -2.29 6.12 31.55 0.19 -2.10 16 17 C -0.14 -4.12 0.85 -52.61 -0.04 -4.17 16 18 C -0.14 -3.06 6.31 31.39 0.20 -2.86 16 19 C 0.06 0.94 7.92 72.59 0.57 1.51 16 20 O -0.36 -10.44 11.07 -53.37 -0.59 -11.03 16 21 C 0.50 17.10 7.02 71.13 0.50 17.60 16 22 O -0.49 -20.56 17.84 21.60 0.39 -20.17 16 23 C 0.06 2.66 5.70 86.07 0.49 3.15 16 24 N -0.53 -28.60 5.79 -186.59 -1.08 -29.69 16 25 H 0.28 12.61 8.29 -92.71 -0.77 11.84 16 26 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 27 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 28 H 0.12 4.63 8.05 -2.91 -0.02 4.61 16 29 H 0.05 1.60 7.99 -2.39 -0.02 1.59 16 30 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.08 2.08 7.79 -2.38 -0.02 2.07 16 32 H 0.13 2.01 7.52 -2.39 -0.02 1.99 16 33 H 0.13 2.00 7.48 -2.39 -0.02 1.98 16 34 H 0.08 2.16 7.40 -2.38 -0.02 2.15 16 35 H 0.12 1.20 8.14 -2.39 -0.02 1.19 16 36 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.12 5.33 4.34 -2.39 -0.01 5.31 16 38 H 0.03 1.50 7.73 -2.39 -0.02 1.49 16 Total: -1.00 -69.71 312.92 3.27 -66.44 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 1.08 Total: 25.74 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 4.88 Total: -9.14 kcal Atomic # 7 Polarization: -86.19 SS G_CDS: -4.51 Total: -90.70 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.21 Total: -31.20 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Total: -69.71 3.27 -66.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354354546.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.168 kcal (2) G-P(sol) polarization free energy of solvation -69.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds