Wall clock time and date at job start Tue Mar 31 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48497 * 109.46860 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46965 * 300.00187 * 3 2 1 6 6 H 1.48496 * 109.46902 * 60.00265 * 3 2 1 7 7 C 1.37883 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99407 * 186.23335 * 7 2 1 9 9 C 1.50692 * 120.00018 * 5.95360 * 7 2 1 10 10 H 1.09011 * 109.46975 * 184.88242 * 9 7 2 11 11 C 1.50698 * 109.47334 * 304.88084 * 9 7 2 12 12 O 1.21287 * 120.00209 * 120.00031 * 11 9 7 13 13 N 1.34775 * 120.00343 * 300.00456 * 11 9 7 14 14 C 1.46503 * 120.00325 * 179.97438 * 13 11 9 15 15 H 1.09004 * 110.85281 * 34.29744 * 14 13 11 16 16 C 1.54481 * 110.96678 * 158.08629 * 14 13 11 17 17 N 1.46770 * 105.46979 * 143.53451 * 16 14 13 18 18 C 1.34424 * 111.29918 * 342.98729 * 17 16 14 19 19 O 1.21283 * 124.93561 * 180.41409 * 18 17 16 20 20 C 1.51334 * 110.13135 * 0.43297 * 18 17 16 21 21 C 1.50695 * 109.47413 * 64.88427 * 9 7 2 22 22 C 1.38236 * 120.00171 * 193.12903 * 21 9 7 23 23 C 1.38241 * 119.99815 * 179.81059 * 22 21 9 24 24 C 1.38237 * 120.00030 * 0.39353 * 23 22 21 25 25 C 1.38239 * 119.99694 * 359.86147 * 24 23 22 26 26 C 1.38233 * 120.00451 * 359.95016 * 25 24 23 27 27 H 0.96996 * 120.00173 * 359.97438 * 1 2 3 28 28 H 0.97005 * 120.00018 * 359.97438 * 13 11 9 29 29 H 1.08997 * 110.24825 * 262.53201 * 16 14 13 30 30 H 1.08991 * 110.24913 * 24.45129 * 16 14 13 31 31 H 0.96997 * 124.34448 * 162.95673 * 17 16 14 32 32 H 1.08998 * 110.48274 * 257.54815 * 20 18 17 33 33 H 1.09004 * 110.52218 * 134.88433 * 20 18 17 34 34 H 1.07992 * 119.99805 * 359.97438 * 22 21 9 35 35 H 1.07997 * 119.99954 * 180.22969 * 23 22 21 36 36 H 1.07998 * 120.00128 * 179.83552 * 24 23 22 37 37 H 1.08005 * 119.99349 * 179.97438 * 25 24 23 38 38 H 1.08001 * 119.99920 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0797 -1.1969 0.1010 9 6 1.2571 -2.4956 -0.1365 10 1 1.9534 -3.3274 -0.0294 11 6 0.2014 -2.5830 0.9355 12 8 -0.9673 -2.6871 0.6286 13 7 0.5560 -2.5454 2.2352 14 6 -0.4702 -2.6298 3.2773 15 1 -1.2881 -3.2791 2.9647 16 6 0.1374 -3.1103 4.6138 17 7 -0.5792 -2.3692 5.6585 18 6 -1.2179 -1.3017 5.1491 19 8 -1.8788 -0.5150 5.7935 20 6 -0.9927 -1.2243 3.6546 21 6 0.6026 -2.5598 -1.4924 22 6 -0.3549 -3.5222 -1.7529 23 6 -0.9580 -3.5786 -2.9955 24 6 -0.5978 -2.6777 -3.9802 25 6 0.3635 -1.7186 -3.7213 26 6 0.9639 -1.6597 -2.4775 27 1 -0.4850 0.8400 0.0004 28 1 1.4908 -2.4624 2.4807 29 1 -0.0201 -4.1819 4.7362 30 1 1.2020 -2.8797 4.6488 31 1 -0.5908 -2.6181 6.5959 32 1 -0.2471 -0.4645 3.4201 33 1 -1.9289 -1.0138 3.1375 34 1 -0.6336 -4.2283 -0.9848 35 1 -1.7088 -4.3281 -3.1978 36 1 -1.0671 -2.7234 -4.9518 37 1 0.6453 -1.0151 -4.4908 38 1 1.7152 -0.9107 -2.2755 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466602065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:17 Heat of formation + Delta-G solvation = -44.071109 kcal Electronic energy + Delta-G solvation = -23117.940003 eV Core-core repulsion = 19732.070022 eV Total energy + Delta-G solvation = -3385.869981 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17948 -38.88838 -37.51979 -36.13726 -33.65408 -33.22439 -30.91027 -29.75644 -29.68171 -27.56752 -26.78669 -24.00876 -21.76299 -21.28076 -20.48934 -20.30375 -19.30714 -17.30196 -16.93336 -16.15806 -15.96414 -15.20844 -15.01102 -14.82760 -14.38862 -13.87091 -13.78919 -13.64380 -13.24943 -13.08133 -12.86296 -12.51447 -12.27258 -12.15919 -11.96917 -11.43831 -11.28290 -11.02240 -10.91647 -10.78178 -10.50156 -10.08456 -9.86986 -9.70625 -9.42824 -9.09807 -8.80422 -8.34903 -8.14558 -7.75363 -7.46622 -6.20954 -4.35028 2.48280 2.54405 2.77050 3.16386 3.27999 3.28500 3.38557 3.95792 4.14927 4.29975 4.58461 4.90752 4.95084 5.07934 5.20495 5.23993 5.54282 5.76364 5.81155 5.91925 6.00161 6.14232 6.33288 6.35919 6.52669 6.62052 6.74274 6.83560 6.86768 7.03149 7.07247 7.15130 7.38613 7.49911 7.58086 7.64373 7.72853 8.09347 8.21209 8.35833 8.51797 8.73076 9.31962 9.61374 10.80557 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.006033 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.663026 B = 4640.222315 C = 5686.568628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.077 3.923 3 Si 0.882 3.118 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.057 3.943 10 H 0.058 0.942 11 C 0.557 3.443 12 O -0.543 6.543 13 N -0.727 5.727 14 C 0.146 3.854 15 H 0.101 0.899 16 C 0.096 3.904 17 N -0.734 5.734 18 C 0.522 3.478 19 O -0.542 6.542 20 C -0.163 4.163 21 C -0.017 4.017 22 C -0.099 4.099 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.147 4.147 26 C -0.073 4.073 27 H 0.266 0.734 28 H 0.398 0.602 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.406 0.594 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.225 -7.457 3.690 8.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.131 4.131 3 Si 0.709 3.291 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.036 3.964 10 H 0.076 0.924 11 C 0.347 3.653 12 O -0.419 6.419 13 N -0.380 5.380 14 C 0.039 3.961 15 H 0.119 0.881 16 C -0.029 4.029 17 N -0.390 5.390 18 C 0.309 3.691 19 O -0.419 6.419 20 C -0.205 4.205 21 C -0.018 4.018 22 C -0.117 4.117 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.165 4.165 26 C -0.091 4.091 27 H 0.076 0.924 28 H 0.232 0.768 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.244 0.756 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.833 -6.962 3.638 8.066 hybrid contribution 0.697 1.191 0.549 1.485 sum 2.530 -5.770 4.186 7.565 Atomic orbital electron populations 1.70009 1.05382 1.27049 1.44781 1.25030 0.94800 0.99118 0.94140 0.86683 0.80348 0.84058 0.78000 1.19493 1.20703 1.20949 1.20720 0.93436 0.88812 1.55040 0.91435 1.17872 0.92408 0.98322 0.87802 0.92398 1.21016 0.90446 0.71511 0.82335 1.90545 1.20409 1.49151 1.81789 1.45748 1.08749 1.78153 1.05326 1.21433 0.92650 0.95287 0.86763 0.88097 1.22319 0.96764 0.96692 0.87172 1.46202 1.52704 1.29217 1.10906 1.21193 0.77191 0.79667 0.91041 1.90716 1.40657 1.43477 1.67088 1.22828 1.05575 1.00485 0.91580 1.19855 0.94270 0.92436 0.95270 1.20987 0.96397 0.99098 0.95252 1.20848 1.00915 0.99966 0.94378 1.20794 0.99563 0.97482 0.98406 1.21011 0.98821 0.99120 0.97538 1.21182 0.99083 0.97436 0.91385 0.92390 0.76765 0.89897 0.90558 0.75562 0.87018 0.87721 0.87355 0.88028 0.88145 0.87974 0.85424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.63 11.12 55.43 0.62 -21.02 16 2 C 0.08 1.85 3.94 -17.82 -0.07 1.78 16 3 Si 0.88 19.12 29.54 -169.99 -5.02 14.10 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 7 C -0.54 -12.31 7.09 -34.44 -0.24 -12.55 16 8 H 0.07 1.50 7.82 -52.49 -0.41 1.09 16 9 C 0.06 1.24 2.78 -94.08 -0.26 0.97 16 10 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 11 C 0.56 11.82 5.26 -10.99 -0.06 11.76 16 12 O -0.54 -13.23 13.54 5.55 0.08 -13.16 16 13 N -0.73 -12.26 5.07 -52.22 -0.26 -12.53 16 14 C 0.15 2.16 3.48 -66.30 -0.23 1.93 16 15 H 0.10 1.60 7.63 -51.93 -0.40 1.20 16 16 C 0.10 1.00 7.51 -3.12 -0.02 0.98 16 17 N -0.73 -8.66 6.24 -59.18 -0.37 -9.02 16 18 C 0.52 8.47 8.43 -10.83 -0.09 8.38 16 19 O -0.54 -10.86 18.03 5.55 0.10 -10.76 16 20 C -0.16 -2.76 6.60 -26.72 -0.18 -2.94 16 21 C -0.02 -0.39 4.64 -104.62 -0.49 -0.88 16 22 C -0.10 -2.12 8.21 -39.58 -0.32 -2.45 16 23 C -0.14 -2.80 10.05 -39.58 -0.40 -3.20 16 24 C -0.14 -2.74 10.05 -39.58 -0.40 -3.14 16 25 C -0.15 -2.95 10.05 -39.58 -0.40 -3.35 16 26 C -0.07 -1.62 8.48 -39.58 -0.34 -1.96 16 27 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.40 5.95 8.28 -40.82 -0.34 5.61 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.71 7.78 -51.93 -0.40 0.30 16 31 H 0.41 3.86 8.96 -40.82 -0.37 3.49 16 32 H 0.11 2.07 8.08 -51.93 -0.42 1.65 16 33 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 34 H 0.11 2.27 6.99 -52.49 -0.37 1.90 16 35 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 38 H 0.13 2.92 6.07 -52.49 -0.32 2.61 16 LS Contribution 319.92 15.07 4.82 4.82 Total: -1.00 -30.32 319.92 -8.23 -38.55 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -4.69 Total: 13.67 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -3.49 Total: -4.66 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: -0.02 Total: -42.57 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.18 Total: -23.91 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.32 -8.23 -38.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466602065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.523 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds