Wall clock time and date at job start Tue Mar 31 2020 06:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00165 * 2 1 4 4 H 1.48497 * 109.46860 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46965 * 300.00187 * 3 2 1 6 6 H 1.48496 * 109.46902 * 60.00265 * 3 2 1 7 7 C 1.37883 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99407 * 186.23335 * 7 2 1 9 9 C 1.50692 * 120.00018 * 5.95360 * 7 2 1 10 10 H 1.09011 * 109.46975 * 184.88242 * 9 7 2 11 11 C 1.50698 * 109.47334 * 304.88084 * 9 7 2 12 12 O 1.21287 * 120.00209 * 120.00031 * 11 9 7 13 13 N 1.34775 * 120.00343 * 300.00456 * 11 9 7 14 14 C 1.46503 * 120.00325 * 179.97438 * 13 11 9 15 15 H 1.09004 * 110.85281 * 34.29744 * 14 13 11 16 16 C 1.54481 * 110.96678 * 158.08629 * 14 13 11 17 17 N 1.46770 * 105.46979 * 143.53451 * 16 14 13 18 18 C 1.34424 * 111.29918 * 342.98729 * 17 16 14 19 19 O 1.21283 * 124.93561 * 180.41409 * 18 17 16 20 20 C 1.51334 * 110.13135 * 0.43297 * 18 17 16 21 21 C 1.50695 * 109.47413 * 64.88427 * 9 7 2 22 22 C 1.38236 * 120.00171 * 193.12903 * 21 9 7 23 23 C 1.38241 * 119.99815 * 179.81059 * 22 21 9 24 24 C 1.38237 * 120.00030 * 0.39353 * 23 22 21 25 25 C 1.38239 * 119.99694 * 359.86147 * 24 23 22 26 26 C 1.38233 * 120.00451 * 359.95016 * 25 24 23 27 27 H 0.96996 * 120.00173 * 359.97438 * 1 2 3 28 28 H 0.97005 * 120.00018 * 359.97438 * 13 11 9 29 29 H 1.08997 * 110.24825 * 262.53201 * 16 14 13 30 30 H 1.08991 * 110.24913 * 24.45129 * 16 14 13 31 31 H 0.96997 * 124.34448 * 162.95673 * 17 16 14 32 32 H 1.08998 * 110.48274 * 257.54815 * 20 18 17 33 33 H 1.09004 * 110.52218 * 134.88433 * 20 18 17 34 34 H 1.07992 * 119.99805 * 359.97438 * 22 21 9 35 35 H 1.07997 * 119.99954 * 180.22969 * 23 22 21 36 36 H 1.07998 * 120.00128 * 179.83552 * 24 23 22 37 37 H 1.08005 * 119.99349 * 179.97438 * 25 24 23 38 38 H 1.08001 * 119.99920 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0797 -1.1969 0.1010 9 6 1.2571 -2.4956 -0.1365 10 1 1.9534 -3.3274 -0.0294 11 6 0.2014 -2.5830 0.9355 12 8 -0.9673 -2.6871 0.6286 13 7 0.5560 -2.5454 2.2352 14 6 -0.4702 -2.6298 3.2773 15 1 -1.2881 -3.2791 2.9647 16 6 0.1374 -3.1103 4.6138 17 7 -0.5792 -2.3692 5.6585 18 6 -1.2179 -1.3017 5.1491 19 8 -1.8788 -0.5150 5.7935 20 6 -0.9927 -1.2243 3.6546 21 6 0.6026 -2.5598 -1.4924 22 6 -0.3549 -3.5222 -1.7529 23 6 -0.9580 -3.5786 -2.9955 24 6 -0.5978 -2.6777 -3.9802 25 6 0.3635 -1.7186 -3.7213 26 6 0.9639 -1.6597 -2.4775 27 1 -0.4850 0.8400 0.0004 28 1 1.4908 -2.4624 2.4807 29 1 -0.0201 -4.1819 4.7362 30 1 1.2020 -2.8797 4.6488 31 1 -0.5908 -2.6181 6.5959 32 1 -0.2471 -0.4645 3.4201 33 1 -1.9289 -1.0138 3.1375 34 1 -0.6336 -4.2283 -0.9848 35 1 -1.7088 -4.3281 -3.1978 36 1 -1.0671 -2.7234 -4.9518 37 1 0.6453 -1.0151 -4.4908 38 1 1.7152 -0.9107 -2.2755 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466602065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:16 Heat of formation + Delta-G solvation = -65.429643 kcal Electronic energy + Delta-G solvation = -23118.866179 eV Core-core repulsion = 19732.070022 eV Total energy + Delta-G solvation = -3386.796157 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.47415 -40.47103 -39.06605 -37.51713 -35.41892 -34.63147 -32.63085 -31.34047 -31.05343 -29.05692 -28.10978 -25.74222 -23.14820 -22.84675 -21.87765 -21.64673 -20.89101 -18.65884 -18.49301 -17.52659 -17.47273 -16.86030 -16.64556 -16.22476 -15.88068 -15.43651 -15.28741 -15.12489 -14.57361 -14.44831 -14.17437 -14.07139 -13.95946 -13.72208 -13.55614 -13.01506 -12.78823 -12.67267 -12.46814 -12.25197 -12.22036 -11.72748 -11.41930 -11.20851 -11.11881 -10.64532 -10.17740 -10.05551 -9.62992 -9.35824 -9.07462 -8.06319 -6.21505 0.89933 0.94291 1.40371 1.45171 1.49165 1.54583 2.30834 2.35254 2.48081 2.76233 3.23222 3.34553 3.44540 3.73832 3.95308 4.10169 4.36496 4.38650 4.52460 4.57471 4.67320 4.68212 4.77908 4.93667 5.03290 5.05569 5.15532 5.21907 5.48563 5.56687 5.74358 5.76312 5.90982 5.92485 5.95660 6.00364 6.03827 6.44906 6.55572 6.81223 7.13762 7.19345 7.47037 8.01907 8.93329 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.006033 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.663026 B = 4640.222315 C = 5686.568628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.047 3.953 3 Si 0.928 3.072 4 H -0.258 1.258 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.530 4.530 8 H 0.073 0.927 9 C 0.047 3.953 10 H 0.076 0.924 11 C 0.557 3.443 12 O -0.580 6.580 13 N -0.714 5.714 14 C 0.146 3.854 15 H 0.092 0.908 16 C 0.108 3.892 17 N -0.709 5.709 18 C 0.523 3.477 19 O -0.586 6.586 20 C -0.161 4.161 21 C -0.038 4.038 22 C -0.115 4.115 23 C -0.146 4.146 24 C -0.143 4.143 25 C -0.153 4.153 26 C -0.096 4.096 27 H 0.254 0.746 28 H 0.409 0.591 29 H 0.123 0.877 30 H 0.102 0.898 31 H 0.424 0.576 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.124 0.876 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.371 -9.009 3.947 10.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.158 4.158 3 Si 0.755 3.245 4 H -0.181 1.181 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.568 4.568 8 H 0.091 0.909 9 C 0.026 3.974 10 H 0.094 0.906 11 C 0.347 3.653 12 O -0.458 6.458 13 N -0.366 5.366 14 C 0.039 3.961 15 H 0.110 0.890 16 C -0.017 4.017 17 N -0.364 5.364 18 C 0.310 3.690 19 O -0.467 6.467 20 C -0.203 4.203 21 C -0.039 4.039 22 C -0.133 4.133 23 C -0.164 4.164 24 C -0.161 4.161 25 C -0.171 4.171 26 C -0.114 4.114 27 H 0.063 0.937 28 H 0.246 0.754 29 H 0.141 0.859 30 H 0.120 0.880 31 H 0.265 0.735 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.142 0.858 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.060 -8.562 3.935 9.907 hybrid contribution 0.373 1.610 0.411 1.703 sum 3.433 -6.952 4.345 8.888 Atomic orbital electron populations 1.70158 1.06575 1.26465 1.47116 1.25453 0.94948 1.01118 0.94244 0.85965 0.80164 0.81525 0.76804 1.18123 1.21868 1.21980 1.20917 0.93627 0.89174 1.53060 0.90872 1.18006 0.92902 0.98400 0.88106 0.90642 1.20913 0.89677 0.71186 0.83550 1.90521 1.21687 1.51021 1.82619 1.45539 1.09800 1.76711 1.04571 1.21504 0.92366 0.93844 0.88428 0.89016 1.22433 0.97331 0.98363 0.83528 1.46024 1.50929 1.27368 1.12119 1.20955 0.77311 0.80323 0.90399 1.90694 1.42905 1.45422 1.67640 1.22679 1.03684 1.01450 0.92526 1.20009 0.95129 0.93133 0.95610 1.21078 0.96786 0.99224 0.96192 1.21222 1.00907 1.00537 0.93735 1.21180 0.98797 0.96388 0.99749 1.21320 0.98717 0.99787 0.97283 1.21187 0.99881 0.97698 0.92681 0.93670 0.75428 0.85938 0.88029 0.73501 0.88893 0.90726 0.87656 0.85294 0.84672 0.85805 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.86 11.12 21.45 0.24 -45.62 16 2 C 0.05 2.26 3.94 84.66 0.33 2.60 16 3 Si 0.93 39.53 29.54 68.60 2.03 41.56 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 7 C -0.53 -23.82 7.09 25.60 0.18 -23.64 16 8 H 0.07 3.16 7.82 -2.91 -0.02 3.13 16 9 C 0.05 2.02 2.78 -13.04 -0.04 1.98 16 10 H 0.08 2.88 8.14 -2.38 -0.02 2.86 16 11 C 0.56 23.63 5.26 87.66 0.46 24.09 16 12 O -0.58 -28.74 13.54 -3.05 -0.04 -28.78 16 13 N -0.71 -23.39 5.07 -437.52 -2.22 -25.60 16 14 C 0.15 4.16 3.48 46.05 0.16 4.32 16 15 H 0.09 2.86 7.63 -2.39 -0.02 2.84 16 16 C 0.11 1.86 7.51 86.83 0.65 2.51 16 17 N -0.71 -14.78 6.24 -459.73 -2.87 -17.65 16 18 C 0.52 16.75 8.43 87.91 0.74 17.50 16 19 O -0.59 -23.72 18.03 -3.04 -0.05 -23.78 16 20 C -0.16 -5.58 6.60 30.60 0.20 -5.38 16 21 C -0.04 -1.70 4.64 -19.87 -0.09 -1.80 16 22 C -0.11 -4.87 8.21 22.27 0.18 -4.69 16 23 C -0.15 -5.49 10.05 22.27 0.22 -5.26 16 24 C -0.14 -5.13 10.05 22.27 0.22 -4.91 16 25 C -0.15 -5.97 10.05 22.27 0.22 -5.75 16 26 C -0.10 -4.29 8.48 22.27 0.19 -4.10 16 27 H 0.25 13.63 8.31 -92.71 -0.77 12.86 16 28 H 0.41 11.44 8.28 -92.70 -0.77 10.67 16 29 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.10 1.39 7.78 -2.39 -0.02 1.37 16 31 H 0.42 6.59 8.96 -92.71 -0.83 5.76 16 32 H 0.09 3.56 8.08 -2.39 -0.02 3.54 16 33 H 0.07 3.00 8.14 -2.38 -0.02 2.98 16 34 H 0.11 4.44 6.99 -2.91 -0.02 4.42 16 35 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 36 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 37 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 38 H 0.11 5.23 6.07 -2.91 -0.02 5.22 16 Total: -1.00 -67.66 319.92 0.23 -67.43 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: -0.49 Total: 35.00 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 3.65 Total: -2.54 kcal Atomic # 7 Polarization: -84.03 SS G_CDS: -4.85 Total: -88.87 kcal Atomic # 8 Polarization: -52.47 SS G_CDS: -0.10 Total: -52.56 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -67.66 0.23 -67.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466602065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.998 kcal (2) G-P(sol) polarization free energy of solvation -67.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds