Wall clock time and date at job start Tue Mar 31 2020 05:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 119.99896 * 2 1 4 4 C 1.50698 * 109.46862 * 269.99505 * 3 2 1 5 5 H 1.07998 * 120.00260 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99715 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00022 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00295 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47255 * 89.99827 * 8 6 4 10 10 H 1.48497 * 109.47239 * 210.00393 * 8 6 4 11 11 H 1.48503 * 109.46652 * 330.00072 * 8 6 4 12 12 C 1.34778 * 119.99930 * 179.97438 * 2 1 3 13 13 O 1.21596 * 119.99933 * 180.02562 * 12 2 1 14 14 N 1.34783 * 119.99951 * 0.02562 * 12 2 1 15 15 C 1.40844 * 120.00013 * 180.02562 * 14 12 2 16 16 C 1.35725 * 126.07606 * 0.02562 * 15 14 12 17 17 N 1.35842 * 107.56401 * 179.97438 * 16 15 14 18 18 C 1.46506 * 126.05722 * 180.02562 * 17 16 15 19 19 N 1.40068 * 107.88048 * 0.26846 * 17 16 15 20 20 C 1.30839 * 108.36570 * 359.54739 * 19 17 16 21 21 C 1.50696 * 125.82943 * 180.16107 * 20 19 17 22 22 F 1.39892 * 109.47435 * 30.33329 * 21 20 19 23 23 F 1.39903 * 109.46758 * 150.33725 * 21 20 19 24 24 H 1.08992 * 109.47355 * 270.00280 * 1 2 3 25 25 H 1.09004 * 109.47059 * 30.00025 * 1 2 3 26 26 H 1.09007 * 109.47199 * 150.00138 * 1 2 3 27 27 H 1.08998 * 109.47240 * 29.99956 * 3 2 1 28 28 H 1.09002 * 109.46460 * 149.99847 * 3 2 1 29 29 H 0.96999 * 119.99982 * 180.02562 * 7 6 4 30 30 H 0.97001 * 120.00111 * 359.97438 * 14 12 2 31 31 H 1.08001 * 126.21722 * 359.97438 * 16 15 14 32 32 H 1.09001 * 109.47060 * 90.00646 * 18 17 16 33 33 H 1.09004 * 109.47073 * 210.00135 * 18 17 16 34 34 H 1.09000 * 109.47212 * 330.00217 * 18 17 16 35 35 H 1.08998 * 109.47087 * 270.33007 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1269 2.8773 -1.6728 7 7 3.3458 3.2572 -2.9127 8 14 3.7350 3.9280 -0.2530 9 1 5.1083 3.5058 0.1226 10 1 3.7508 5.3548 -0.6643 11 1 2.8292 3.7586 0.9115 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4649 -2.3345 0.0005 15 6 2.1691 -3.5542 0.0016 16 6 3.5187 -3.6979 0.0032 17 7 3.7893 -5.0291 0.0044 18 6 5.1217 -5.6383 0.0068 19 7 2.5686 -5.7160 -0.0027 20 6 1.6003 -4.8361 0.0018 21 6 0.1258 -5.1469 0.0003 22 9 -0.0957 -6.3603 0.6602 23 9 -0.5668 -4.1249 0.6583 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1383 0.5139 29 1 3.8233 4.0827 -3.0900 30 1 0.4949 -2.3345 0.0005 31 1 4.2455 -2.8990 0.0035 32 1 5.4504 -5.7889 1.0351 33 1 5.0828 -6.5991 -0.5066 34 1 5.8230 -4.9803 -0.5063 35 1 -0.2285 -5.2225 -1.0277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526971478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:01 Heat of formation + Delta-G solvation = -29.463505 kcal Electronic energy + Delta-G solvation = -23110.892229 eV Core-core repulsion = 19203.718902 eV Total energy + Delta-G solvation = -3907.173327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.18300 -47.21045 -41.40235 -39.42234 -35.25352 -34.63428 -33.17808 -32.43456 -29.59940 -28.67365 -27.99261 -26.02654 -24.98359 -22.80537 -21.45623 -20.66388 -19.12180 -18.17737 -17.68623 -17.19846 -16.97546 -16.73237 -16.43343 -15.60368 -15.56008 -14.89156 -14.49010 -14.09183 -13.90146 -13.56933 -13.46255 -13.29577 -13.17289 -12.94027 -12.80473 -12.51333 -12.42017 -12.09103 -11.58306 -11.50476 -11.09412 -10.90642 -10.58677 -10.50331 -10.14825 -9.59440 -9.49651 -9.39723 -8.60158 -7.96675 -7.44063 -6.09859 -4.08708 1.64553 2.17600 2.47698 3.09544 3.28733 3.34842 3.36436 3.58718 3.86561 3.94921 4.19989 4.38076 4.44029 4.67161 4.75973 5.03502 5.08217 5.22824 5.27953 5.46153 5.65932 5.69048 5.79906 5.92013 6.09233 6.52686 6.72310 6.85556 7.09121 7.21302 7.36254 7.52567 7.61210 8.43732 8.46265 8.93382 9.10576 9.50279 11.03555 Molecular weight = 288.11amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.004451 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.136982 B = 6288.649294 C = 7168.641058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.606 5.606 3 C 0.231 3.769 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.265 1.265 12 C 0.705 3.295 13 O -0.578 6.578 14 N -0.667 5.667 15 C 0.054 3.946 16 C 0.041 3.959 17 N -0.364 5.364 18 C 0.107 3.893 19 N -0.251 5.251 20 C -0.034 4.034 21 C 0.362 3.638 22 F -0.190 7.190 23 F -0.193 7.193 24 H 0.048 0.952 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.033 0.967 28 H 0.039 0.961 29 H 0.264 0.736 30 H 0.406 0.594 31 H 0.211 0.789 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.536 -16.420 6.460 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.341 5.341 3 C 0.110 3.890 4 C -0.568 4.568 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.703 3.297 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.407 3.593 13 O -0.455 6.455 14 N -0.318 5.318 15 C -0.052 4.052 16 C -0.105 4.105 17 N -0.151 5.151 18 C -0.034 4.034 19 N -0.077 5.077 20 C -0.202 4.202 21 C 0.307 3.693 22 F -0.171 7.171 23 F -0.174 7.174 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.244 0.756 31 H 0.228 0.772 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.190 -17.415 6.382 18.820 hybrid contribution -0.377 1.511 0.623 1.677 sum -3.567 -15.903 7.005 17.740 Atomic orbital electron populations 1.21647 0.80966 1.02888 1.00666 1.47044 1.05890 1.05532 1.75608 1.19625 0.92269 0.78736 0.98362 1.21356 1.36955 1.07147 0.91345 0.90750 1.24848 0.95259 0.97316 0.95565 1.69900 1.41468 1.23587 1.18675 0.86849 0.80130 0.79762 0.82912 1.19915 1.21100 1.19023 1.15724 0.85298 0.79928 0.78373 1.90709 1.11613 1.85305 1.57893 1.42406 1.09543 1.02012 1.77886 1.17061 0.90803 0.84566 1.12726 1.23285 0.97037 0.86192 1.03997 1.48398 1.05339 1.04483 1.56849 1.21908 0.77907 1.00003 1.03617 1.77107 0.88770 1.19653 1.22179 1.22360 0.95600 0.91512 1.10688 1.19441 0.84767 0.71881 0.93248 1.93023 1.95281 1.45074 1.83768 1.92969 1.80135 1.60160 1.84129 0.93351 0.89947 0.92786 0.94936 0.94332 0.92565 0.75559 0.77241 0.90502 0.89217 0.88813 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.25 10.20 59.85 0.61 1.86 16 2 N -0.61 -12.40 2.86 -188.74 -0.54 -12.94 16 3 C 0.23 5.53 4.23 -5.20 -0.02 5.51 16 4 C -0.53 -14.94 9.94 -34.44 -0.34 -15.28 16 5 H 0.07 2.32 8.06 -52.49 -0.42 1.89 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 8 Si 0.88 21.15 27.47 -169.99 -4.67 16.48 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 12 C 0.71 14.56 8.25 -86.91 -0.72 13.84 16 13 O -0.58 -13.62 13.08 5.28 0.07 -13.55 16 14 N -0.67 -11.11 5.25 -14.39 -0.08 -11.18 16 15 C 0.05 0.88 6.79 -83.86 -0.57 0.31 16 16 C 0.04 0.66 10.38 -16.68 -0.17 0.49 16 17 N -0.36 -4.94 4.04 -67.81 -0.27 -5.21 16 18 C 0.11 0.90 11.48 59.85 0.69 1.59 16 19 N -0.25 -3.68 12.50 33.74 0.42 -3.26 16 20 C -0.03 -0.48 6.85 -82.27 -0.56 -1.04 16 21 C 0.36 4.02 5.83 36.00 0.21 4.23 16 22 F -0.19 -2.34 17.27 2.25 0.04 -2.30 16 23 F -0.19 -2.22 15.27 2.25 0.03 -2.19 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 26 H 0.05 0.68 6.36 -51.92 -0.33 0.35 16 27 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 28 H 0.04 0.98 6.84 -51.93 -0.36 0.62 16 29 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.41 5.70 4.68 -40.82 -0.19 5.51 16 31 H 0.21 3.62 5.84 -52.49 -0.31 3.32 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 307.86 15.07 4.64 4.64 Total: -1.00 -35.22 307.86 -4.23 -39.45 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.68 Total: 3.15 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: -0.98 Total: 13.48 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.31 Total: -59.16 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.07 Total: -13.55 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.07 Total: -4.48 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.22 -4.23 -39.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526971478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.988 kcal (2) G-P(sol) polarization free energy of solvation -35.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds