Wall clock time and date at job start Tue Mar 31 2020 05:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 119.99896 * 2 1 4 4 C 1.50698 * 109.46862 * 269.99505 * 3 2 1 5 5 H 1.07998 * 120.00260 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99715 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00022 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 120.00295 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47255 * 89.99827 * 8 6 4 10 10 H 1.48497 * 109.47239 * 210.00393 * 8 6 4 11 11 H 1.48503 * 109.46652 * 330.00072 * 8 6 4 12 12 C 1.34778 * 119.99930 * 179.97438 * 2 1 3 13 13 O 1.21596 * 119.99933 * 180.02562 * 12 2 1 14 14 N 1.34783 * 119.99951 * 0.02562 * 12 2 1 15 15 C 1.40844 * 120.00013 * 180.02562 * 14 12 2 16 16 C 1.35725 * 126.07606 * 0.02562 * 15 14 12 17 17 N 1.35842 * 107.56401 * 179.97438 * 16 15 14 18 18 C 1.46506 * 126.05722 * 180.02562 * 17 16 15 19 19 N 1.40068 * 107.88048 * 0.26846 * 17 16 15 20 20 C 1.30839 * 108.36570 * 359.54739 * 19 17 16 21 21 C 1.50696 * 125.82943 * 180.16107 * 20 19 17 22 22 F 1.39892 * 109.47435 * 30.33329 * 21 20 19 23 23 F 1.39903 * 109.46758 * 150.33725 * 21 20 19 24 24 H 1.08992 * 109.47355 * 270.00280 * 1 2 3 25 25 H 1.09004 * 109.47059 * 30.00025 * 1 2 3 26 26 H 1.09007 * 109.47199 * 150.00138 * 1 2 3 27 27 H 1.08998 * 109.47240 * 29.99956 * 3 2 1 28 28 H 1.09002 * 109.46460 * 149.99847 * 3 2 1 29 29 H 0.96999 * 119.99982 * 180.02562 * 7 6 4 30 30 H 0.97001 * 120.00111 * 359.97438 * 14 12 2 31 31 H 1.08001 * 126.21722 * 359.97438 * 16 15 14 32 32 H 1.09001 * 109.47060 * 90.00646 * 18 17 16 33 33 H 1.09004 * 109.47073 * 210.00135 * 18 17 16 34 34 H 1.09000 * 109.47212 * 330.00217 * 18 17 16 35 35 H 1.08998 * 109.47087 * 270.33007 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0975 1.0960 -2.2417 6 6 3.1269 2.8773 -1.6728 7 7 3.3458 3.2572 -2.9127 8 14 3.7350 3.9280 -0.2530 9 1 5.1083 3.5058 0.1226 10 1 3.7508 5.3548 -0.6643 11 1 2.8292 3.7586 0.9115 12 6 2.1389 -1.1672 0.0005 13 8 3.3548 -1.1672 0.0010 14 7 1.4649 -2.3345 0.0005 15 6 2.1691 -3.5542 0.0016 16 6 3.5187 -3.6979 0.0032 17 7 3.7893 -5.0291 0.0044 18 6 5.1217 -5.6383 0.0068 19 7 2.5686 -5.7160 -0.0027 20 6 1.6003 -4.8361 0.0018 21 6 0.1258 -5.1469 0.0003 22 9 -0.0957 -6.3603 0.6602 23 9 -0.5668 -4.1249 0.6583 24 1 -0.3633 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1383 0.5139 29 1 3.8233 4.0827 -3.0900 30 1 0.4949 -2.3345 0.0005 31 1 4.2455 -2.8990 0.0035 32 1 5.4504 -5.7889 1.0351 33 1 5.0828 -6.5991 -0.5066 34 1 5.8230 -4.9803 -0.5063 35 1 -0.2285 -5.2225 -1.0277 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526971478.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:00 Heat of formation + Delta-G solvation = -54.766756 kcal Electronic energy + Delta-G solvation = -23111.989460 eV Core-core repulsion = 19203.718902 eV Total energy + Delta-G solvation = -3908.270558 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.06883 -48.10314 -42.57454 -40.92101 -36.84062 -36.04168 -34.67222 -34.12934 -30.96801 -30.04824 -29.21456 -27.43161 -26.04839 -24.53177 -22.81099 -21.80295 -20.60628 -19.37738 -19.10864 -18.56361 -18.26029 -17.97964 -17.57867 -16.89905 -16.78092 -16.36250 -16.06162 -15.51175 -15.06589 -14.94086 -14.53975 -14.44429 -14.39611 -14.23028 -13.98324 -13.65875 -13.64777 -13.46971 -13.22162 -12.83177 -12.52380 -12.40112 -12.08117 -12.04358 -11.83001 -11.70309 -11.08387 -10.78722 -10.55529 -9.55419 -8.75580 -8.29858 -6.34870 0.53397 1.15630 1.22372 1.37828 1.41279 1.49814 1.76236 2.32264 2.35104 2.62394 3.01286 3.05757 3.10714 3.24295 3.88703 3.91216 4.10384 4.28095 4.40994 4.47588 4.59843 4.64604 4.66667 4.77218 4.80858 4.91526 4.96213 5.47968 5.52824 5.56665 5.88879 5.96217 6.28809 6.33836 6.66617 6.98506 7.26584 7.56468 8.87162 Molecular weight = 288.11amu Principal moments of inertia in cm(-1) A = 0.021919 B = 0.004451 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.136982 B = 6288.649294 C = 7168.641058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.616 5.616 3 C 0.240 3.760 4 C -0.535 4.535 5 H 0.028 0.972 6 C 0.012 3.988 7 N -0.947 5.947 8 Si 0.948 3.052 9 H -0.276 1.276 10 H -0.278 1.278 11 H -0.236 1.236 12 C 0.697 3.303 13 O -0.616 6.616 14 N -0.650 5.650 15 C 0.029 3.971 16 C 0.030 3.970 17 N -0.359 5.359 18 C 0.094 3.906 19 N -0.260 5.260 20 C -0.031 4.031 21 C 0.362 3.638 22 F -0.197 7.197 23 F -0.195 7.195 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.025 0.975 29 H 0.268 0.732 30 H 0.419 0.581 31 H 0.195 0.805 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.475 -17.151 8.049 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.350 5.350 3 C 0.118 3.882 4 C -0.573 4.573 5 H 0.046 0.954 6 C -0.186 4.186 7 N -0.588 5.588 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.204 1.204 11 H -0.159 1.159 12 C 0.398 3.602 13 O -0.497 6.497 14 N -0.302 5.302 15 C -0.077 4.077 16 C -0.118 4.118 17 N -0.145 5.145 18 C -0.045 4.045 19 N -0.086 5.086 20 C -0.199 4.199 21 C 0.307 3.693 22 F -0.178 7.178 23 F -0.176 7.176 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.260 0.740 31 H 0.211 0.789 32 H 0.112 0.888 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -4.184 -18.210 7.985 20.319 hybrid contribution -0.055 1.605 0.057 1.607 sum -4.239 -16.605 8.043 18.931 Atomic orbital electron populations 1.21950 0.77785 1.03941 1.03036 1.47031 1.07906 1.04405 1.75645 1.19316 0.92690 0.80875 0.95348 1.21577 1.36644 1.06655 0.92459 0.95407 1.25829 0.95326 0.98902 0.98549 1.70057 1.42813 1.24511 1.21373 0.85710 0.79662 0.77606 0.79915 1.20112 1.20350 1.15879 1.15932 0.85038 0.80867 0.78319 1.90686 1.13404 1.86095 1.59511 1.42090 1.09990 1.01111 1.77005 1.17314 0.91188 0.84940 1.14253 1.23118 0.97062 0.87116 1.04488 1.48783 1.06512 1.03631 1.55616 1.22334 0.75989 1.00892 1.05253 1.77079 0.89239 1.19996 1.22292 1.22778 0.97196 0.90301 1.09633 1.19875 0.83006 0.71375 0.95049 1.93010 1.95132 1.45487 1.84155 1.92959 1.79902 1.60311 1.84437 0.90166 0.90396 0.90381 0.92592 0.95723 0.92341 0.74035 0.78884 0.88808 0.87430 0.87491 0.80736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.12 10.20 127.77 1.30 3.42 16 2 N -0.62 -24.75 2.86 -869.30 -2.48 -27.23 16 3 C 0.24 11.37 4.23 85.63 0.36 11.73 16 4 C -0.53 -30.83 9.94 25.60 0.25 -30.58 16 5 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 6 C 0.01 0.68 5.47 84.65 0.46 1.14 16 7 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 8 Si 0.95 43.36 27.47 68.60 1.88 45.25 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.24 -9.57 6.54 99.48 0.65 -8.92 16 12 C 0.70 28.77 8.25 179.05 1.48 30.25 16 13 O -0.62 -29.78 13.08 -4.02 -0.05 -29.84 16 14 N -0.65 -21.06 5.25 -317.70 -1.67 -22.73 16 15 C 0.03 0.91 6.79 37.59 0.26 1.16 16 16 C 0.03 0.96 10.38 83.49 0.87 1.82 16 17 N -0.36 -9.41 4.04 -368.45 -1.49 -10.90 16 18 C 0.09 1.46 11.48 127.77 1.47 2.93 16 19 N -0.26 -7.22 12.50 -47.16 -0.59 -7.81 16 20 C -0.03 -0.84 6.85 43.19 0.30 -0.54 16 21 C 0.36 7.11 5.83 71.23 0.42 7.52 16 22 F -0.20 -4.38 17.27 44.97 0.78 -3.61 16 23 F -0.19 -3.99 15.27 44.97 0.69 -3.31 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.08 2.27 8.07 -2.38 -0.02 2.25 16 26 H 0.08 1.79 6.36 -2.38 -0.02 1.77 16 27 H 0.06 2.40 7.13 -2.39 -0.02 2.38 16 28 H 0.02 1.24 6.84 -2.39 -0.02 1.22 16 29 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 30 H 0.42 10.96 4.68 -92.71 -0.43 10.53 16 31 H 0.19 6.95 5.84 -2.91 -0.02 6.93 16 32 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.18 1.96 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -78.73 307.86 5.18 -73.55 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.66 Total: 16.67 kcal Atomic # 6 Polarization: 21.70 SS G_CDS: 7.16 Total: 28.86 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -5.93 Total: -127.58 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -0.05 Total: -29.84 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 1.46 Total: -6.91 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.25 kcal Total: -78.73 5.18 -73.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526971478.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.786 kcal (2) G-P(sol) polarization free energy of solvation -78.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds