Wall clock time and date at job start Tue Mar 31 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99898 * 2 1 4 4 H 1.48506 * 109.46710 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47105 * 299.99594 * 3 2 1 6 6 H 1.48502 * 109.47275 * 60.00124 * 3 2 1 7 7 C 1.37876 * 119.99753 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99762 * 173.52484 * 7 2 1 9 9 C 1.50698 * 120.00179 * 353.52814 * 7 2 1 10 10 C 1.52999 * 115.54927 * 84.88610 * 9 7 2 11 11 S 1.81395 * 109.47340 * 63.81871 * 10 9 7 12 12 C 1.81400 * 102.99992 * 174.89890 * 11 10 9 13 13 H 1.09000 * 109.24934 * 305.59535 * 12 11 10 14 14 C 1.52732 * 109.25158 * 65.06374 * 12 11 10 15 15 C 1.53330 * 108.39881 * 171.29851 * 14 12 11 16 16 C 1.52738 * 108.37569 * 290.13670 * 15 14 12 17 17 C 1.50624 * 110.58227 * 51.14819 * 16 15 14 18 18 C 1.38910 * 117.74849 * 162.49079 * 17 16 15 19 19 C 1.37940 * 120.54255 * 179.44070 * 18 17 16 20 20 C 1.38265 * 119.76848 * 0.02562 * 19 18 17 21 21 C 1.37928 * 119.77402 * 0.12755 * 20 19 18 22 22 C 1.37665 * 122.56262 * 342.17016 * 17 16 15 23 23 C 1.52992 * 117.50141 * 230.55531 * 9 7 2 24 24 C 1.52994 * 117.49900 * 299.21780 * 9 7 2 25 25 H 0.97004 * 119.99741 * 4.99064 * 1 2 3 26 26 H 1.08997 * 109.47206 * 303.81658 * 10 9 7 27 27 H 1.08999 * 109.47329 * 183.82339 * 10 9 7 28 28 H 1.08995 * 109.67807 * 51.57554 * 14 12 11 29 29 H 1.08997 * 109.67450 * 291.02435 * 14 12 11 30 30 H 1.09003 * 109.68066 * 49.85584 * 15 14 12 31 31 H 1.08999 * 109.68232 * 170.41055 * 15 14 12 32 32 H 1.09007 * 109.25203 * 171.44162 * 16 15 14 33 33 H 1.09004 * 109.25239 * 290.87025 * 16 15 14 34 34 H 1.07995 * 119.72665 * 359.42666 * 18 17 16 35 35 H 1.08001 * 120.11208 * 180.02562 * 19 18 17 36 36 H 1.08001 * 120.10837 * 180.10476 * 20 19 18 37 37 H 1.08002 * 119.72496 * 180.02562 * 21 20 19 38 38 H 1.09005 * 117.50359 * 215.00571 * 23 9 7 39 39 H 1.09003 * 117.50040 * 0.02562 * 23 9 7 40 40 H 1.08998 * 117.50154 * 359.97065 * 24 9 7 41 41 H 1.08998 * 117.50161 * 144.97751 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1971 -0.1049 9 6 1.2582 -2.4949 0.1482 10 6 0.6910 -3.0809 -1.1463 11 16 2.0535 -3.5033 -2.2668 12 6 1.2067 -4.3126 -3.6519 13 1 0.5967 -5.1317 -3.2710 14 6 0.3063 -3.2981 -4.3538 15 6 -0.2280 -3.9350 -5.6422 16 6 0.9308 -4.0724 -6.6278 17 6 2.1029 -4.7571 -5.9749 18 6 3.0823 -5.2918 -6.8021 19 6 4.1862 -5.9212 -6.2653 20 6 4.3194 -6.0215 -4.8928 21 6 3.3463 -5.4939 -4.0698 22 6 2.2332 -4.8610 -4.6084 23 6 1.7549 -3.4777 1.2103 24 6 0.4521 -2.7052 1.4315 25 1 -0.4850 0.8369 -0.0731 26 1 0.0422 -2.3467 -1.6238 27 1 0.1169 -3.9788 -0.9178 28 1 0.8805 -2.4042 -4.5970 29 1 -0.5266 -3.0341 -3.7021 30 1 -0.6407 -4.9194 -5.4213 31 1 -1.0023 -3.2997 -6.0721 32 1 0.6044 -4.6589 -7.4867 33 1 1.2354 -3.0815 -6.9647 34 1 2.9786 -5.2144 -7.8743 35 1 4.9437 -6.3342 -6.9150 36 1 5.1822 -6.5116 -4.4666 37 1 3.4514 -5.5723 -2.9978 38 1 1.6777 -4.5418 0.9869 39 1 2.6213 -3.1833 1.8026 40 1 0.4620 -1.9028 2.1692 41 1 -0.4824 -3.2607 1.3535 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559363799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:57 Heat of formation + Delta-G solvation = 26.995146 kcal Electronic energy + Delta-G solvation = -20291.223426 eV Core-core repulsion = 17454.728323 eV Total energy + Delta-G solvation = -2836.495103 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 288.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.84939 -36.55120 -35.94385 -32.46985 -31.91893 -30.16622 -28.83170 -27.45454 -25.29255 -23.66975 -22.56822 -22.08658 -21.10676 -19.40013 -19.08408 -16.68501 -15.99237 -15.60357 -15.37925 -15.03681 -14.61521 -14.22586 -13.92342 -13.69642 -13.56457 -13.17696 -13.12547 -12.53817 -12.48087 -12.03779 -11.97466 -11.63809 -11.29361 -11.26766 -11.02160 -10.94196 -10.82738 -10.57889 -10.45744 -10.27760 -10.11879 -9.59711 -9.20092 -8.80042 -8.62120 -8.46393 -8.38573 -7.97853 -6.76284 -6.02340 -4.07174 1.38799 1.50017 2.47575 3.30140 3.38556 3.44030 3.51142 3.89949 4.43110 4.69085 4.73647 4.99958 5.03727 5.17811 5.18567 5.26432 5.28312 5.38999 5.47672 5.55317 5.61129 5.70556 5.89932 5.93652 5.99104 6.02448 6.10813 6.16944 6.23246 6.28236 6.41970 6.48024 6.54738 6.58901 6.65634 6.74785 6.78226 6.83721 7.07648 7.12756 7.42289 7.50229 7.91040 8.41934 8.94063 9.58318 11.06328 Molecular weight = 288.12amu Principal moments of inertia in cm(-1) A = 0.018731 B = 0.004669 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.528998 B = 5995.369667 C = 6227.863297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.073 3.927 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.484 4.484 8 H 0.062 0.938 9 C 0.056 3.944 10 C -0.030 4.030 11 S -0.227 6.227 12 C -0.032 4.032 13 H 0.086 0.914 14 C -0.114 4.114 15 C -0.117 4.117 16 C -0.080 4.080 17 C -0.069 4.069 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.103 4.103 22 C -0.050 4.050 23 C -0.205 4.205 24 C -0.150 4.150 25 H 0.259 0.741 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.134 0.866 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.509 -10.632 -12.030 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.522 4.522 8 H 0.080 0.920 9 C 0.055 3.945 10 C -0.178 4.178 11 S 0.006 5.994 12 C -0.160 4.160 13 H 0.104 0.896 14 C -0.153 4.153 15 C -0.156 4.156 16 C -0.117 4.117 17 C -0.071 4.071 18 C -0.146 4.146 19 C -0.141 4.141 20 C -0.144 4.144 21 C -0.122 4.122 22 C -0.051 4.051 23 C -0.243 4.243 24 C -0.190 4.190 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.152 0.848 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.447 -10.297 -11.799 15.851 hybrid contribution -0.937 0.716 -0.105 1.183 sum 1.510 -9.581 -11.904 15.356 Atomic orbital electron populations 1.69987 1.05868 1.26565 1.49542 1.24940 0.94770 0.98830 0.94439 0.86590 0.80466 0.83854 0.77504 1.19613 1.21017 1.21072 1.20395 0.93075 0.88329 1.50361 0.91967 1.18449 0.97919 0.93885 0.84294 1.23099 0.96010 1.00356 0.98358 1.87029 1.18074 1.75487 1.18811 1.21984 0.97496 0.99638 0.96875 0.89621 1.21892 0.99116 0.98082 0.96185 1.21580 0.97172 1.01112 0.95739 1.20478 0.93075 1.00299 0.97820 1.19574 0.96476 0.98588 0.92450 1.21052 0.94568 0.99760 0.99195 1.21026 0.97848 0.99958 0.95285 1.21056 0.99116 1.00658 0.93616 1.21415 0.93244 0.96619 1.00915 1.19100 0.95417 0.98190 0.92372 1.23010 0.98245 0.95762 1.07243 1.22584 0.92325 1.01227 1.02850 0.93140 0.89734 0.93700 0.90188 0.91065 0.91862 0.91291 0.91057 0.90528 0.86463 0.86441 0.86203 0.84827 0.91500 0.90336 0.89853 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.59 12.94 55.43 0.72 -23.87 16 2 C 0.07 1.98 5.39 -17.82 -0.10 1.89 16 3 Si 0.89 21.30 29.55 -169.99 -5.02 16.28 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 7 C -0.48 -13.10 8.44 -34.44 -0.29 -13.39 16 8 H 0.06 1.74 7.82 -52.48 -0.41 1.33 16 9 C 0.06 1.37 1.34 -155.67 -0.21 1.16 16 10 C -0.03 -0.66 5.45 37.16 0.20 -0.46 16 11 S -0.23 -4.54 19.16 -107.50 -2.06 -6.60 16 12 C -0.03 -0.51 2.69 -28.05 -0.08 -0.59 16 13 H 0.09 1.34 8.14 -51.92 -0.42 0.91 16 14 C -0.11 -1.72 5.06 -26.70 -0.14 -1.85 16 15 C -0.12 -1.39 5.98 -26.69 -0.16 -1.54 16 16 C -0.08 -0.90 5.67 -28.05 -0.16 -1.06 16 17 C -0.07 -0.93 5.74 -104.62 -0.60 -1.53 16 18 C -0.13 -1.52 9.61 -39.44 -0.38 -1.90 16 19 C -0.12 -1.43 10.05 -39.68 -0.40 -1.83 16 20 C -0.13 -1.61 10.05 -39.68 -0.40 -2.01 16 21 C -0.10 -1.52 8.96 -39.45 -0.35 -1.88 16 22 C -0.05 -0.75 5.44 -104.61 -0.57 -1.32 16 23 C -0.21 -4.49 9.96 -26.70 -0.27 -4.76 16 24 C -0.15 -3.48 9.45 -26.70 -0.25 -3.73 16 25 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 26 H 0.08 2.03 7.66 -51.93 -0.40 1.63 16 27 H 0.04 0.91 8.10 -51.92 -0.42 0.49 16 28 H 0.08 1.33 8.09 -51.93 -0.42 0.91 16 29 H 0.07 1.12 7.50 -51.93 -0.39 0.73 16 30 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.12 1.11 8.05 -52.49 -0.42 0.69 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 37 H 0.13 2.05 7.04 -52.49 -0.37 1.68 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 40 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 41 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 344.15 15.07 5.19 5.19 Total: -1.00 -28.27 344.15 -11.93 -40.21 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.61 Total: 3.60 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: -4.14 Total: -34.80 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.72 Total: -23.87 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -4.54 SS G_CDS: -2.06 Total: -6.60 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.27 -11.93 -40.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559363799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.201 kcal (2) G-P(sol) polarization free energy of solvation -28.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds