Wall clock time and date at job start Tue Mar 31 2020 06:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47199 * 8.01739 * 3 2 1 5 5 H 1.09000 * 109.47381 * 305.00312 * 4 3 2 6 6 C 1.53001 * 109.47008 * 184.99958 * 4 3 2 7 7 O 1.42898 * 109.47375 * 305.00015 * 6 4 3 8 8 N 1.46498 * 109.46890 * 65.00115 * 4 3 2 9 9 C 1.34787 * 119.99911 * 204.99794 * 8 4 3 10 10 O 1.21579 * 119.99828 * 0.02562 * 9 8 4 11 11 N 1.34775 * 119.99723 * 180.02562 * 9 8 4 12 12 C 1.39245 * 119.99477 * 175.71487 * 11 9 8 13 13 C 1.39481 * 119.82853 * 215.01822 * 12 11 9 14 14 C 1.36379 * 120.16738 * 179.75619 * 13 12 11 15 15 C 1.40865 * 119.82500 * 0.51897 * 14 13 12 16 16 C 1.41155 * 120.16601 * 179.71694 * 15 14 13 17 17 H 1.08001 * 120.00482 * 214.80039 * 16 15 14 18 18 C 1.39895 * 119.99754 * 34.79672 * 16 15 14 19 19 N 1.30876 * 120.00314 * 355.56429 * 18 16 15 20 20 Si 1.86809 * 120.00119 * 175.55910 * 18 16 15 21 21 H 1.48499 * 109.46848 * 90.00332 * 20 18 16 22 22 H 1.48491 * 109.47218 * 210.00456 * 20 18 16 23 23 H 1.48496 * 109.47016 * 330.00704 * 20 18 16 24 24 C 1.40874 * 119.67436 * 359.73455 * 15 14 13 25 25 C 1.36370 * 119.82671 * 0.02562 * 24 15 14 26 26 H 4.44643 * 5.63398 * 179.97438 * 4 1 2 27 27 H 1.08996 * 109.47483 * 128.01843 * 3 2 1 28 28 H 1.09002 * 109.46964 * 248.02080 * 3 2 1 29 29 H 1.09000 * 109.47207 * 65.00370 * 6 4 3 30 30 H 1.09004 * 109.47239 * 184.99849 * 6 4 3 31 31 H 0.96703 * 113.99583 * 180.02562 * 7 6 4 32 32 H 0.96995 * 120.00529 * 25.00235 * 8 4 3 33 33 H 0.96993 * 119.99934 * 355.70992 * 11 9 8 34 34 H 1.07994 * 119.91719 * 0.02562 * 13 12 11 35 35 H 1.07996 * 120.08502 * 180.24778 * 14 13 12 36 36 H 0.97005 * 120.00633 * 179.97438 * 19 18 16 37 37 H 1.08003 * 120.08480 * 179.97438 * 24 15 14 38 38 H 1.08001 * 119.91097 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1566 -1.4275 -0.2012 5 1 2.7223 -2.0789 0.5572 6 6 4.6814 -1.4461 -0.0770 7 8 5.2455 -0.5051 -0.9925 8 7 2.7693 -1.9016 -1.5321 9 6 2.6431 -3.2229 -1.7665 10 8 2.8502 -4.0212 -0.8733 11 7 2.2872 -3.6591 -2.9911 12 6 2.2435 -5.0250 -3.2580 13 6 2.6024 -5.4970 -4.5205 14 6 2.5669 -6.8338 -4.7880 15 6 2.1560 -7.7376 -3.7887 16 6 2.1109 -9.1222 -4.0596 17 1 1.3431 -9.7354 -3.6114 18 6 3.0606 -9.7000 -4.9087 19 7 3.9373 -8.9449 -5.5202 20 14 3.0777 -11.5497 -5.1696 21 1 2.2040 -11.8954 -6.3195 22 1 4.4655 -11.9972 -5.4504 23 1 2.5771 -12.2268 -3.9465 24 6 1.7899 -7.2527 -2.5177 25 6 1.8352 -5.9137 -2.2636 26 1 -1.0498 -0.0005 0.0001 27 1 3.0090 0.6337 -0.8096 28 1 3.0091 0.3855 0.9530 29 1 4.9664 -1.1787 0.9406 30 1 5.0526 -2.4447 -0.3076 31 1 6.2114 -0.4635 -0.9685 32 1 2.6037 -1.2647 -2.2447 33 1 2.0615 -3.0215 -3.6863 34 1 2.9134 -4.8025 -5.2869 35 1 2.8489 -7.1982 -5.7648 36 1 4.5962 -9.3456 -6.1088 37 1 1.4734 -7.9397 -1.7467 38 1 1.5545 -5.5405 -1.2898 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000717733708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:25 Heat of formation + Delta-G solvation = -3.348674 kcal Electronic energy + Delta-G solvation = -21764.659240 eV Core-core repulsion = 18380.555116 eV Total energy + Delta-G solvation = -3384.104124 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03979 -38.05639 -36.98386 -35.33916 -34.30016 -33.25931 -32.70209 -30.39551 -29.47965 -28.52212 -26.80142 -24.86554 -22.28120 -21.22047 -20.62640 -20.06891 -18.61975 -17.87329 -17.45305 -17.17176 -16.57638 -15.52959 -15.29753 -15.05694 -14.59808 -14.25938 -13.85857 -13.78817 -13.53086 -13.31862 -12.92590 -12.61211 -12.13990 -11.98379 -11.81495 -11.62287 -11.29964 -11.11287 -10.94964 -10.68113 -10.44460 -10.34087 -10.08548 -10.00897 -9.48723 -9.40488 -9.18946 -8.87667 -8.80769 -7.47802 -6.77126 -6.55763 -4.27940 2.68471 2.70059 2.73971 3.05507 3.12472 3.13151 3.17510 3.22623 3.72923 4.02485 4.15220 4.19674 4.63859 4.76567 4.81059 5.05582 5.16363 5.24898 5.44930 5.62849 5.70550 5.84862 5.91269 6.25548 6.50065 6.65229 6.83243 6.90279 7.11024 7.21848 7.33381 7.43672 7.47430 7.51978 7.71486 7.93060 8.03789 8.15749 8.37205 8.54130 8.70032 8.99051 8.99332 9.16136 10.35452 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.030486 B = 0.003167 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.236159 B = 8840.328751 C = 9188.908855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.188 4.188 3 C -0.014 4.014 4 C 0.176 3.824 5 H 0.103 0.897 6 C 0.061 3.939 7 O -0.571 6.571 8 N -0.739 5.739 9 C 0.697 3.303 10 O -0.582 6.582 11 N -0.667 5.667 12 C 0.025 3.975 13 C -0.124 4.124 14 C -0.140 4.140 15 C 0.097 3.903 16 C -0.463 4.463 17 H 0.075 0.925 18 C 0.069 3.931 19 N -0.814 5.814 20 Si 0.914 3.086 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.204 4.204 25 C -0.087 4.087 26 H 0.215 0.785 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.378 0.622 32 H 0.395 0.605 33 H 0.391 0.609 34 H 0.090 0.910 35 H 0.132 0.868 36 H 0.276 0.724 37 H 0.095 0.905 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.163 16.549 6.312 17.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.188 4.188 3 C -0.051 4.051 4 C 0.070 3.930 5 H 0.121 0.879 6 C -0.018 4.018 7 O -0.376 6.376 8 N -0.395 5.395 9 C 0.398 3.602 10 O -0.459 6.459 11 N -0.312 5.312 12 C -0.067 4.067 13 C -0.145 4.145 14 C -0.160 4.160 15 C 0.095 3.905 16 C -0.494 4.494 17 H 0.093 0.907 18 C -0.145 4.145 19 N -0.442 5.442 20 Si 0.739 3.261 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.224 4.224 25 C -0.107 4.107 26 H 0.232 0.768 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.225 0.775 32 H 0.228 0.772 33 H 0.224 0.776 34 H 0.108 0.892 35 H 0.149 0.851 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.059 15.881 6.849 17.295 hybrid contribution 0.462 -0.298 -0.654 0.854 sum 0.403 15.583 6.196 16.774 Atomic orbital electron populations 1.24881 0.95967 1.00334 1.01020 1.22982 0.94426 1.00783 1.00569 1.18930 0.84860 0.97074 1.04250 1.20767 0.92090 0.94204 0.85979 0.87921 1.22720 0.93925 0.93037 0.92139 1.86422 1.25370 1.62490 1.63332 1.45032 1.75736 1.05760 1.12968 1.16017 0.78321 0.82111 0.83782 1.90892 1.57655 1.53526 1.43874 1.42105 1.70499 1.07072 1.11572 1.17086 1.12862 0.80376 0.96406 1.20299 1.03114 0.96286 0.94755 1.21170 1.03842 0.90411 1.00592 1.17706 0.89442 0.93471 0.89885 1.19475 1.12115 0.93465 1.24318 0.90713 1.25857 0.94581 1.00465 0.93597 1.69767 1.14461 1.36850 1.23111 0.86215 0.78052 0.82349 0.79442 1.19595 1.20374 1.18774 1.20808 1.10819 0.94020 0.96755 1.20422 0.99428 0.93145 0.97731 0.76805 0.88281 0.88304 0.92804 0.92203 0.77488 0.77197 0.77551 0.89187 0.85073 0.91261 0.88687 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.14 19.25 29.55 0.57 -1.57 16 2 C -0.19 -2.05 13.05 -37.12 -0.48 -2.54 16 3 C -0.01 -0.13 4.97 -29.52 -0.15 -0.28 16 4 C 0.18 2.04 2.34 -67.93 -0.16 1.88 16 5 H 0.10 1.37 7.57 -51.93 -0.39 0.97 16 6 C 0.06 0.63 6.85 37.16 0.25 0.89 16 7 O -0.57 -5.35 12.83 -35.23 -0.45 -5.80 16 8 N -0.74 -9.92 4.73 -58.68 -0.28 -10.20 16 9 C 0.70 12.74 8.36 -86.91 -0.73 12.01 16 10 O -0.58 -12.92 13.42 5.30 0.07 -12.85 16 11 N -0.67 -12.26 5.31 -14.10 -0.07 -12.34 16 12 C 0.03 0.58 6.31 -83.57 -0.53 0.06 16 13 C -0.12 -2.90 9.90 -39.79 -0.39 -3.29 16 14 C -0.14 -3.67 8.62 -39.26 -0.34 -4.01 16 15 C 0.10 2.67 5.55 -106.80 -0.59 2.07 16 16 C -0.46 -12.58 9.02 -37.86 -0.34 -12.93 16 17 H 0.07 1.95 7.85 -52.49 -0.41 1.54 16 18 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 19 N -0.81 -21.55 10.60 55.55 0.59 -20.96 16 20 Si 0.91 19.33 29.56 -169.99 -5.03 14.31 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 24 C -0.20 -5.30 9.74 -39.26 -0.38 -5.68 16 25 C -0.09 -2.15 8.61 -39.79 -0.34 -2.49 16 26 H 0.22 1.60 7.80 -54.10 -0.42 1.18 16 27 H 0.10 0.86 7.73 -51.93 -0.40 0.46 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.38 2.11 9.12 45.56 0.42 2.52 16 32 H 0.39 4.47 8.62 -40.82 -0.35 4.11 16 33 H 0.39 5.76 8.83 -40.82 -0.36 5.40 16 34 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 35 H 0.13 3.54 6.13 -52.49 -0.32 3.22 16 36 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 37 H 0.09 2.35 8.06 -52.48 -0.42 1.92 16 38 H 0.11 2.67 6.22 -52.49 -0.33 2.34 16 LS Contribution 334.47 15.07 5.04 5.04 Total: -1.00 -32.94 334.47 -7.66 -40.59 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -3.82 Total: 16.40 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -3.71 Total: -14.19 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.24 Total: -43.50 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.38 Total: -18.65 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.94 -7.66 -40.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717733708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.245 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds