Wall clock time and date at job start Tue Mar 31 2020 06:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47199 * 8.01739 * 3 2 1 5 5 H 1.09000 * 109.47381 * 305.00312 * 4 3 2 6 6 C 1.53001 * 109.47008 * 184.99958 * 4 3 2 7 7 O 1.42898 * 109.47375 * 305.00015 * 6 4 3 8 8 N 1.46498 * 109.46890 * 65.00115 * 4 3 2 9 9 C 1.34787 * 119.99911 * 204.99794 * 8 4 3 10 10 O 1.21579 * 119.99828 * 0.02562 * 9 8 4 11 11 N 1.34775 * 119.99723 * 180.02562 * 9 8 4 12 12 C 1.39245 * 119.99477 * 175.71487 * 11 9 8 13 13 C 1.39481 * 119.82853 * 215.01822 * 12 11 9 14 14 C 1.36379 * 120.16738 * 179.75619 * 13 12 11 15 15 C 1.40865 * 119.82500 * 0.51897 * 14 13 12 16 16 C 1.41155 * 120.16601 * 179.71694 * 15 14 13 17 17 H 1.08001 * 120.00482 * 214.80039 * 16 15 14 18 18 C 1.39895 * 119.99754 * 34.79672 * 16 15 14 19 19 N 1.30876 * 120.00314 * 355.56429 * 18 16 15 20 20 Si 1.86809 * 120.00119 * 175.55910 * 18 16 15 21 21 H 1.48499 * 109.46848 * 90.00332 * 20 18 16 22 22 H 1.48491 * 109.47218 * 210.00456 * 20 18 16 23 23 H 1.48496 * 109.47016 * 330.00704 * 20 18 16 24 24 C 1.40874 * 119.67436 * 359.73455 * 15 14 13 25 25 C 1.36370 * 119.82671 * 0.02562 * 24 15 14 26 26 H 4.44643 * 5.63398 * 179.97438 * 4 1 2 27 27 H 1.08996 * 109.47483 * 128.01843 * 3 2 1 28 28 H 1.09002 * 109.46964 * 248.02080 * 3 2 1 29 29 H 1.09000 * 109.47207 * 65.00370 * 6 4 3 30 30 H 1.09004 * 109.47239 * 184.99849 * 6 4 3 31 31 H 0.96703 * 113.99583 * 180.02562 * 7 6 4 32 32 H 0.96995 * 120.00529 * 25.00235 * 8 4 3 33 33 H 0.96993 * 119.99934 * 355.70992 * 11 9 8 34 34 H 1.07994 * 119.91719 * 0.02562 * 13 12 11 35 35 H 1.07996 * 120.08502 * 180.24778 * 14 13 12 36 36 H 0.97005 * 120.00633 * 179.97438 * 19 18 16 37 37 H 1.08003 * 120.08480 * 179.97438 * 24 15 14 38 38 H 1.08001 * 119.91097 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1566 -1.4275 -0.2012 5 1 2.7223 -2.0789 0.5572 6 6 4.6814 -1.4461 -0.0770 7 8 5.2455 -0.5051 -0.9925 8 7 2.7693 -1.9016 -1.5321 9 6 2.6431 -3.2229 -1.7665 10 8 2.8502 -4.0212 -0.8733 11 7 2.2872 -3.6591 -2.9911 12 6 2.2435 -5.0250 -3.2580 13 6 2.6024 -5.4970 -4.5205 14 6 2.5669 -6.8338 -4.7880 15 6 2.1560 -7.7376 -3.7887 16 6 2.1109 -9.1222 -4.0596 17 1 1.3431 -9.7354 -3.6114 18 6 3.0606 -9.7000 -4.9087 19 7 3.9373 -8.9449 -5.5202 20 14 3.0777 -11.5497 -5.1696 21 1 2.2040 -11.8954 -6.3195 22 1 4.4655 -11.9972 -5.4504 23 1 2.5771 -12.2268 -3.9465 24 6 1.7899 -7.2527 -2.5177 25 6 1.8352 -5.9137 -2.2636 26 1 -1.0498 -0.0005 0.0001 27 1 3.0090 0.6337 -0.8096 28 1 3.0091 0.3855 0.9530 29 1 4.9664 -1.1787 0.9406 30 1 5.0526 -2.4447 -0.3076 31 1 6.2114 -0.4635 -0.9685 32 1 2.6037 -1.2647 -2.2447 33 1 2.0615 -3.0215 -3.6863 34 1 2.9134 -4.8025 -5.2869 35 1 2.8489 -7.1982 -5.7648 36 1 4.5962 -9.3456 -6.1088 37 1 1.4734 -7.9397 -1.7467 38 1 1.5545 -5.5405 -1.2898 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000717733708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:25 Heat of formation + Delta-G solvation = -27.073900 kcal Electronic energy + Delta-G solvation = -21765.688043 eV Core-core repulsion = 18380.555116 eV Total energy + Delta-G solvation = -3385.132927 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.49781 -39.52324 -38.32561 -36.32379 -35.97686 -34.78515 -34.01021 -31.63339 -31.34741 -30.26829 -27.60246 -26.71997 -23.78234 -22.94923 -22.10912 -21.57123 -19.73635 -19.21503 -18.96500 -18.34183 -17.98692 -17.05341 -16.67076 -16.43556 -15.84218 -15.64892 -15.40147 -14.92662 -14.74220 -14.57186 -14.25051 -14.08162 -13.98632 -13.57076 -13.21876 -13.04672 -12.82132 -12.74913 -12.60079 -12.46510 -11.82135 -11.39427 -11.26331 -11.23109 -11.13376 -10.95697 -10.83833 -10.62698 -10.07154 -9.44722 -8.67434 -8.47983 -6.30564 0.86330 1.16104 1.40369 1.47925 1.55108 1.74946 1.87906 1.94463 2.21601 2.26420 2.83125 3.33992 3.40389 3.47931 3.70479 3.95362 4.19141 4.38301 4.40709 4.51348 4.56248 4.69656 4.79299 4.93668 5.01558 5.14784 5.16785 5.19122 5.34835 5.45874 5.54901 5.70834 5.83533 6.05334 6.13350 6.27022 6.41749 6.70290 6.72947 6.88836 6.98982 7.03137 7.15192 7.66446 8.44736 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.030486 B = 0.003167 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.236159 B = 8840.328751 C = 9188.908855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.212 4.212 3 C -0.003 4.003 4 C 0.169 3.831 5 H 0.083 0.917 6 C 0.070 3.930 7 O -0.576 6.576 8 N -0.718 5.718 9 C 0.695 3.305 10 O -0.623 6.623 11 N -0.661 5.661 12 C 0.042 3.958 13 C -0.121 4.121 14 C -0.157 4.157 15 C 0.066 3.934 16 C -0.500 4.500 17 H 0.072 0.928 18 C 0.028 3.972 19 N -0.843 5.843 20 Si 0.988 3.012 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.263 1.263 24 C -0.219 4.219 25 C -0.098 4.098 26 H 0.235 0.765 27 H 0.110 0.890 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.396 0.604 32 H 0.408 0.592 33 H 0.412 0.588 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.284 0.716 37 H 0.095 0.905 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.632 18.218 6.205 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.212 4.212 3 C -0.040 4.040 4 C 0.064 3.936 5 H 0.101 0.899 6 C -0.010 4.010 7 O -0.384 6.384 8 N -0.374 5.374 9 C 0.396 3.604 10 O -0.504 6.504 11 N -0.308 5.308 12 C -0.052 4.052 13 C -0.142 4.142 14 C -0.177 4.177 15 C 0.064 3.936 16 C -0.531 4.531 17 H 0.090 0.910 18 C -0.184 4.184 19 N -0.471 5.471 20 Si 0.809 3.191 21 H -0.184 1.184 22 H -0.194 1.194 23 H -0.187 1.187 24 C -0.239 4.239 25 C -0.118 4.118 26 H 0.252 0.748 27 H 0.128 0.872 28 H 0.142 0.858 29 H 0.103 0.897 30 H 0.045 0.955 31 H 0.246 0.754 32 H 0.244 0.756 33 H 0.249 0.751 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.417 17.648 6.732 18.893 hybrid contribution 0.317 -0.610 -0.553 0.882 sum 0.733 17.038 6.178 18.139 Atomic orbital electron populations 1.25605 0.96986 0.99728 1.00733 1.23521 0.95361 1.01329 1.00980 1.18934 0.83914 0.95173 1.05966 1.20956 0.93194 0.95318 0.84139 0.89943 1.22520 0.92777 0.91707 0.93947 1.86370 1.27171 1.61722 1.63187 1.44913 1.74164 1.04037 1.14313 1.16175 0.77973 0.83322 0.82975 1.90870 1.59317 1.55109 1.45085 1.41905 1.70670 1.05711 1.12538 1.17104 1.10299 0.82249 0.95569 1.20526 1.02080 0.95828 0.95727 1.21155 1.04919 0.91627 0.99986 1.18010 0.90712 0.94219 0.90666 1.19710 1.13341 0.93852 1.26157 0.91013 1.26725 0.93601 1.05358 0.92710 1.69830 1.14911 1.38888 1.23442 0.85107 0.78492 0.76004 0.79464 1.18414 1.19411 1.18729 1.20925 1.11466 0.94843 0.96658 1.20509 0.99978 0.93075 0.98230 0.74837 0.87241 0.85805 0.89745 0.95535 0.75405 0.75579 0.75120 0.85903 0.86283 0.90535 0.88683 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.09 19.25 74.32 1.43 -2.66 16 2 C -0.21 -4.21 13.05 31.13 0.41 -3.81 16 3 C 0.00 -0.05 4.97 28.79 0.14 0.09 16 4 C 0.17 3.64 2.34 44.99 0.11 3.75 16 5 H 0.08 2.15 7.57 -2.39 -0.02 2.13 16 6 C 0.07 1.31 6.85 71.98 0.49 1.81 16 7 O -0.58 -9.19 12.83 -148.98 -1.91 -11.10 16 8 N -0.72 -18.09 4.73 -457.81 -2.16 -20.25 16 9 C 0.69 24.77 8.36 179.05 1.50 26.26 16 10 O -0.62 -27.83 13.42 -3.96 -0.05 -27.88 16 11 N -0.66 -23.33 5.31 -316.78 -1.68 -25.02 16 12 C 0.04 1.90 6.31 38.56 0.24 2.14 16 13 C -0.12 -5.59 9.90 22.14 0.22 -5.37 16 14 C -0.16 -8.37 8.62 22.48 0.19 -8.18 16 15 C 0.07 3.75 5.55 -21.27 -0.12 3.63 16 16 C -0.50 -28.07 9.02 23.39 0.21 -27.86 16 17 H 0.07 3.90 7.85 -2.91 -0.02 3.88 16 18 C 0.03 1.44 5.42 85.24 0.46 1.90 16 19 N -0.84 -45.22 10.60 21.82 0.23 -44.99 16 20 Si 0.99 39.83 29.56 68.60 2.03 41.86 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 23 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 24 C -0.22 -11.77 9.74 22.48 0.22 -11.55 16 25 C -0.10 -4.90 8.61 22.13 0.19 -4.71 16 26 H 0.24 3.06 7.80 -4.43 -0.03 3.02 16 27 H 0.11 1.52 7.73 -2.39 -0.02 1.51 16 28 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.40 3.31 9.12 -74.06 -0.68 2.63 16 32 H 0.41 8.19 8.62 -92.71 -0.80 7.39 16 33 H 0.41 11.11 8.83 -92.71 -0.82 10.29 16 34 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 35 H 0.12 6.59 6.13 -2.91 -0.02 6.58 16 36 H 0.28 13.83 8.30 -92.70 -0.77 13.06 16 37 H 0.09 4.92 8.06 -2.91 -0.02 4.90 16 38 H 0.11 5.36 6.22 -2.91 -0.02 5.34 16 Total: -1.00 -73.01 334.47 0.97 -72.05 By element: Atomic # 1 Polarization: 41.06 SS G_CDS: -1.18 Total: 39.88 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 5.70 Total: -24.54 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -3.62 Total: -90.26 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -1.96 Total: -38.98 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -73.01 0.97 -72.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000717733708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.972 kcal (2) G-P(sol) polarization free energy of solvation -73.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds