Wall clock time and date at job start Tue Mar 31 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47010 * 2 1 4 4 C 1.47201 * 109.47297 * 240.00341 * 2 1 3 5 5 N 2.60800 * 109.47056 * 240.00219 * 2 1 3 6 6 C 1.52997 * 109.47018 * 120.00036 * 2 1 3 7 7 N 1.46494 * 109.47168 * 294.99986 * 6 2 1 8 8 C 1.34780 * 119.99917 * 180.02562 * 7 6 2 9 9 O 1.21282 * 120.00129 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99933 * 180.02562 * 8 7 6 11 11 C 1.50701 * 109.47242 * 179.97438 * 10 8 7 12 12 C 1.38299 * 119.93217 * 269.72899 * 11 10 8 13 13 C 1.38093 * 120.06953 * 179.72477 * 12 11 10 14 14 C 1.38883 * 119.92808 * 0.56550 * 13 12 11 15 15 O 1.35754 * 120.06438 * 179.68623 * 14 13 12 16 16 C 1.34826 * 116.99724 * 174.49160 * 15 14 13 17 17 H 1.07998 * 120.00100 * 5.04739 * 16 15 14 18 18 C 1.38654 * 119.99970 * 185.05457 * 16 15 14 19 19 N 1.31557 * 120.00012 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47303 * 60.00249 * 20 18 16 22 22 H 1.48499 * 109.46956 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47359 * 299.99968 * 20 18 16 24 24 C 1.38871 * 119.86468 * 359.70509 * 14 13 12 25 25 C 1.38101 * 119.93230 * 0.02562 * 24 14 13 26 26 H 1.08997 * 109.47167 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47268 * 300.00545 * 1 2 3 28 28 H 1.09006 * 109.46891 * 60.00116 * 1 2 3 29 29 H 1.09002 * 109.46939 * 174.99705 * 6 2 1 30 30 H 1.09001 * 109.46887 * 55.00273 * 6 2 1 31 31 H 0.97002 * 120.00191 * 359.97438 * 7 6 2 32 32 H 1.09002 * 109.47056 * 59.99417 * 10 8 7 33 33 H 1.09001 * 109.46884 * 299.99904 * 10 8 7 34 34 H 1.08005 * 119.96050 * 359.97425 * 12 11 10 35 35 H 1.07999 * 120.03730 * 180.26989 * 13 12 11 36 36 H 0.97002 * 120.00021 * 179.97438 * 19 18 16 37 37 H 1.08002 * 120.03853 * 179.97438 * 24 14 13 38 38 H 1.07997 * 119.96732 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0207 -0.6938 -1.2019 5 7 2.3993 -1.2293 -2.1295 6 6 2.0399 -0.7212 1.2492 7 7 1.6524 0.0353 2.4423 8 6 1.9964 -0.4131 3.6659 9 8 2.6264 -1.4433 3.7792 10 6 1.5972 0.3648 4.8933 11 6 2.0996 -0.3455 6.1237 12 6 1.3036 -1.2868 6.7505 13 6 1.7634 -1.9436 7.8749 14 6 3.0220 -1.6494 8.3830 15 8 3.4742 -2.2887 9.4919 16 6 4.7456 -2.0407 9.8657 17 1 5.3282 -1.2990 9.3396 18 6 5.3052 -2.7380 10.9255 19 7 4.5954 -3.6412 11.5666 20 14 7.0671 -2.3948 11.4429 21 1 7.1973 -0.9704 11.8421 22 1 7.4238 -3.2650 12.5922 23 1 7.9805 -2.6759 10.3064 24 6 3.8167 -0.6996 7.7547 25 6 3.3535 -0.0503 6.6273 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 3.1263 -0.7995 1.2055 30 1 1.6053 -1.7198 1.2951 31 1 1.1488 0.8594 2.3517 32 1 0.5108 0.4423 4.9369 33 1 2.0311 1.3637 4.8473 34 1 0.3228 -1.5114 6.3578 35 1 1.1430 -2.6817 8.3614 36 1 4.9870 -4.1293 12.3078 37 1 4.7957 -0.4683 8.1477 38 1 3.9709 0.6887 6.1385 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171847513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:49 Heat of formation + Delta-G solvation = -46.933891 kcal Electronic energy + Delta-G solvation = -21037.407539 eV Core-core repulsion = 17651.413419 eV Total energy + Delta-G solvation = -3385.994121 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.05059 -40.38206 -38.62117 -38.04563 -36.32322 -34.37428 -33.57826 -32.52653 -31.71987 -28.61658 -27.47153 -26.60813 -24.04877 -23.58600 -22.37225 -21.34571 -19.81074 -18.87478 -18.62146 -17.63637 -17.04262 -16.69962 -16.35936 -16.18866 -15.77106 -15.52344 -15.44937 -15.10462 -14.87969 -14.37756 -14.31159 -14.20187 -14.05814 -13.90400 -13.57597 -13.44314 -12.93104 -12.70031 -12.61897 -12.42128 -12.26090 -12.23120 -12.14544 -12.12114 -11.92421 -11.14184 -10.88782 -10.70789 -10.01119 -9.70850 -8.84958 -8.45594 -6.13577 0.66942 0.72723 1.34417 1.45566 1.51101 1.61110 1.74690 1.84041 2.18903 2.29564 2.86190 3.06726 3.24825 3.57227 3.72422 3.94953 3.95917 4.12322 4.24003 4.26663 4.34064 4.58784 4.65486 4.72190 4.80950 4.83773 4.87230 4.98150 5.09875 5.15698 5.17898 5.36362 5.38706 5.53425 5.62259 5.76283 5.83934 6.05382 6.29852 6.51584 6.74529 6.99033 7.48098 7.81546 8.77780 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.030256 B = 0.002613 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.203072 B =10712.990433 C =11135.610115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.010 3.990 3 H 0.161 0.839 4 C 0.237 3.763 5 N -0.492 5.492 6 C 0.126 3.874 7 N -0.710 5.710 8 C 0.511 3.489 9 O -0.584 6.584 10 C -0.076 4.076 11 C -0.145 4.145 12 C -0.058 4.058 13 C -0.209 4.209 14 C 0.108 3.892 15 O -0.235 6.235 16 C -0.414 4.414 17 H 0.100 0.900 18 C -0.025 4.025 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.254 1.254 22 H -0.271 1.271 23 H -0.261 1.261 24 C -0.246 4.246 25 C -0.061 4.061 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.425 0.575 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.150 0.850 35 H 0.109 0.891 36 H 0.272 0.728 37 H 0.115 0.885 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 16.079 -20.637 28.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 H 0.178 0.822 4 C -0.081 4.081 5 N -0.169 5.169 6 C 0.001 3.999 7 N -0.365 5.365 8 C 0.299 3.701 9 O -0.463 6.463 10 C -0.116 4.116 11 C -0.146 4.146 12 C -0.075 4.075 13 C -0.228 4.228 14 C 0.059 3.941 15 O -0.142 6.142 16 C -0.490 4.490 17 H 0.117 0.883 18 C -0.222 4.222 19 N -0.561 5.561 20 Si 0.838 3.162 21 H -0.178 1.178 22 H -0.195 1.195 23 H -0.185 1.185 24 C -0.266 4.266 25 C -0.079 4.079 26 H 0.074 0.926 27 H 0.123 0.877 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.264 0.736 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.167 0.833 35 H 0.128 0.872 36 H 0.081 0.919 37 H 0.133 0.867 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.182 14.248 -21.660 27.504 hybrid contribution 0.712 -0.207 0.899 1.165 sum -8.471 14.040 -20.761 26.456 Atomic orbital electron populations 1.21932 0.89681 1.03672 1.05337 1.19198 0.98669 1.00329 0.82933 0.82197 1.29505 0.91798 0.92460 0.94294 1.81297 1.10719 1.10914 1.13929 1.21118 1.00009 0.95487 0.83334 1.45628 1.58474 1.28511 1.03930 1.21201 0.78219 0.85124 0.85554 1.90789 1.41324 1.26915 1.87269 1.20555 1.05040 0.99396 0.86565 1.19339 0.95071 1.01285 0.98903 1.20918 0.99995 0.93925 0.92710 1.20464 0.95213 1.05929 1.01222 1.19976 0.94616 0.92333 0.87217 1.83934 1.30389 1.61996 1.37926 1.21773 0.87126 1.23355 1.16719 0.88288 1.26610 1.05053 0.95012 0.95561 1.70184 1.39348 1.24696 1.21855 0.84649 0.74075 0.79187 0.78292 1.17842 1.19529 1.18501 1.21241 1.01681 1.02369 1.01278 1.20976 0.95476 0.97921 0.93507 0.92643 0.87719 0.90256 0.92292 0.92129 0.73561 0.84511 0.84828 0.83277 0.87247 0.91883 0.86710 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.08 9.02 71.98 0.65 0.57 16 2 C 0.01 0.04 2.80 -12.60 -0.04 0.00 16 3 H 0.16 -0.53 8.14 -2.38 -0.02 -0.55 16 4 C 0.24 3.16 14.65 89.44 1.31 4.47 16 5 N -0.49 -10.67 18.54 20.01 0.37 -10.30 16 6 C 0.13 1.32 5.02 86.38 0.43 1.76 16 7 N -0.71 -5.91 5.28 -463.07 -2.45 -8.36 16 8 C 0.51 9.74 7.82 87.66 0.69 10.43 16 9 O -0.58 -19.27 16.03 -3.04 -0.05 -19.32 16 10 C -0.08 -1.15 5.83 29.10 0.17 -0.98 16 11 C -0.14 -4.25 4.38 -19.83 -0.09 -4.34 16 12 C -0.06 -1.92 9.69 22.25 0.22 -1.71 16 13 C -0.21 -9.27 9.99 22.39 0.22 -9.04 16 14 C 0.11 5.65 6.65 22.58 0.15 5.80 16 15 O -0.24 -14.76 9.76 -22.74 -0.22 -14.98 16 16 C -0.41 -24.99 9.49 67.92 0.64 -24.34 16 17 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16 18 C -0.03 -1.48 5.49 84.83 0.47 -1.02 16 19 N -0.92 -58.21 13.67 21.61 0.30 -57.92 16 20 Si 1.02 44.13 29.55 68.60 2.03 46.16 16 21 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 24 C -0.25 -11.16 9.17 22.39 0.21 -10.96 16 25 C -0.06 -2.10 9.69 22.25 0.22 -1.88 16 26 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 27 H 0.10 -0.43 7.18 -2.39 -0.02 -0.44 16 28 H 0.08 -0.04 8.14 -2.38 -0.02 -0.06 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.42 -0.56 7.66 -92.71 -0.71 -1.27 16 32 H 0.14 1.06 8.08 -2.39 -0.02 1.04 16 33 H 0.13 1.11 8.08 -2.39 -0.02 1.09 16 34 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 35 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 36 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 37 H 0.12 5.30 5.64 -2.91 -0.02 5.29 16 38 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -91.88 338.88 5.61 -86.27 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.39 Total: 9.69 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 5.25 Total: -31.24 kcal Atomic # 7 Polarization: -74.80 SS G_CDS: -1.78 Total: -76.58 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.27 Total: -34.30 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -91.88 5.61 -86.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171847513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.334 kcal (2) G-P(sol) polarization free energy of solvation -91.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds