Wall clock time and date at job start Tue Mar 31 2020 06:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.47351 * 2 1 4 4 C 1.46497 * 120.00189 * 84.99965 * 3 2 1 5 5 C 1.50694 * 109.47115 * 275.00116 * 4 3 2 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 S 1.65605 * 119.99847 * 265.00016 * 3 2 1 14 14 O 1.42098 * 106.40230 * 23.54106 * 13 3 2 15 15 O 1.42103 * 106.39983 * 156.45849 * 13 3 2 16 16 N 1.65601 * 107.21978 * 270.00091 * 13 3 2 17 17 C 1.46496 * 119.99945 * 64.99669 * 16 13 3 18 18 H 1.08999 * 109.64380 * 334.58655 * 17 16 13 19 19 C 1.53031 * 109.64158 * 95.00156 * 17 16 13 20 20 C 1.50060 * 110.14757 * 169.11702 * 19 17 16 21 21 C 1.29444 * 124.08054 * 342.87154 * 20 19 17 22 22 C 1.50068 * 124.07033 * 0.49372 * 21 20 19 23 23 C 1.53034 * 110.14222 * 342.82548 * 22 21 20 24 24 H 1.08999 * 109.47068 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46652 * 299.99909 * 1 2 3 26 26 H 1.09001 * 109.46901 * 60.00002 * 1 2 3 27 27 H 1.09003 * 109.47031 * 239.99419 * 2 1 3 28 28 H 1.09001 * 109.46901 * 119.99997 * 2 1 3 29 29 H 1.09007 * 109.47078 * 154.99755 * 4 3 2 30 30 H 1.09003 * 109.46733 * 35.00478 * 4 3 2 31 31 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 32 32 H 0.96999 * 119.99667 * 245.00267 * 16 13 3 33 33 H 1.08997 * 109.35504 * 289.33076 * 19 17 16 34 34 H 1.09003 * 109.35116 * 49.05216 * 19 17 16 35 35 H 1.07999 * 117.96284 * 162.84708 * 20 19 17 36 36 H 1.07993 * 117.96734 * 180.46561 * 21 20 19 37 37 H 1.08997 * 109.36121 * 103.05266 * 22 21 20 38 38 H 1.09003 * 109.35793 * 222.77129 * 22 21 20 39 39 H 1.08996 * 109.66345 * 289.78304 * 23 22 21 40 40 H 1.08999 * 109.63999 * 169.14502 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 1.2638 5 6 0.8362 2.7288 1.6355 6 1 -0.0225 2.5949 0.9943 7 6 0.7228 3.4682 2.7939 8 7 1.7685 3.6317 3.5745 9 14 -0.9159 4.2375 3.2542 10 1 -0.7741 4.9748 4.5354 11 1 -1.3389 5.1778 2.1856 12 1 -1.9377 3.1709 3.4080 13 16 2.4123 2.1201 -1.4287 14 8 1.6869 1.4414 -2.4448 15 8 2.3058 3.5185 -1.1999 16 7 4.0145 1.8135 -1.7139 17 6 4.4657 0.4411 -1.9569 18 1 3.7740 -0.2601 -1.4901 19 6 4.5257 0.1786 -3.4633 20 6 5.2314 -1.1177 -3.7344 21 6 5.9821 -1.7284 -2.8747 22 6 6.2431 -1.2308 -1.4832 23 6 5.8719 0.2499 -1.3748 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.9082 2.8917 1.1512 30 1 2.4691 1.4182 2.0480 31 1 1.6889 4.1522 4.3892 32 1 4.6542 2.5426 -1.7198 33 1 3.5124 0.1286 -3.8620 34 1 5.0660 0.9904 -3.9502 35 1 5.1048 -1.5695 -4.7071 36 1 6.4493 -2.6538 -3.1775 37 1 5.6458 -1.8060 -0.7758 38 1 7.3002 -1.3543 -1.2476 39 1 6.5865 0.8494 -1.9387 40 1 5.8796 0.5538 -0.3280 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337089426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:58 Heat of formation + Delta-G solvation = -74.582746 kcal Electronic energy + Delta-G solvation = -22270.800980 eV Core-core repulsion = 19019.051867 eV Total energy + Delta-G solvation = -3251.749114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.85256 -36.55002 -36.02848 -35.11335 -34.12360 -32.57462 -30.87459 -29.80200 -28.81138 -26.73134 -23.30533 -22.83169 -22.05679 -21.83215 -19.13784 -17.94235 -16.99435 -16.76240 -16.69108 -16.20238 -15.45791 -14.93809 -14.31809 -13.91806 -13.72289 -13.58461 -13.44648 -13.06494 -12.94812 -12.59747 -12.39409 -12.20517 -11.86181 -11.70747 -11.48526 -11.36128 -11.22627 -11.10771 -10.98563 -10.94237 -10.83828 -10.50540 -10.40693 -10.35152 -9.89240 -9.62287 -9.28418 -9.04608 -8.41151 -8.07654 -6.03963 -4.06799 1.26973 2.19214 3.34917 3.38535 3.43073 3.53274 4.15242 4.46670 4.64748 4.67101 4.78445 5.00634 5.17263 5.22931 5.26966 5.31231 5.40410 5.47881 5.50428 5.69660 5.76582 5.85792 5.92029 5.98577 6.03498 6.12793 6.18051 6.32254 6.44396 6.53570 6.71635 6.84799 7.00007 7.14682 7.29402 7.46020 7.66421 7.93993 8.24046 8.94970 9.57716 11.04803 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.026000 B = 0.004993 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.673008 B = 5606.453304 C = 5738.373527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.134 3.866 3 N -0.992 5.992 4 C 0.259 3.741 5 C -0.525 4.525 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.287 1.287 11 H -0.275 1.275 12 H -0.276 1.276 13 S 2.778 3.222 14 O -0.995 6.995 15 O -0.966 6.966 16 N -1.131 6.131 17 C 0.158 3.842 18 H 0.085 0.915 19 C -0.113 4.113 20 C -0.146 4.146 21 C -0.163 4.163 22 C -0.090 4.090 23 C -0.126 4.126 24 H 0.050 0.950 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.263 0.737 32 H 0.411 0.589 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.944 -10.649 -10.202 17.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.007 3.993 3 N -0.835 5.835 4 C 0.137 3.863 5 C -0.564 4.564 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.212 1.212 11 H -0.200 1.200 12 H -0.202 1.202 13 S 2.786 3.214 14 O -0.978 6.978 15 O -0.950 6.950 16 N -0.887 5.887 17 C 0.050 3.950 18 H 0.103 0.897 19 C -0.152 4.152 20 C -0.165 4.165 21 C -0.182 4.182 22 C -0.127 4.127 23 C -0.165 4.165 24 H 0.069 0.931 25 H 0.097 0.903 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.244 0.756 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.280 -10.192 -10.574 16.860 hybrid contribution -0.317 0.515 0.539 0.810 sum 7.964 -9.678 -10.035 16.055 Atomic orbital electron populations 1.22256 0.96312 1.00826 1.03722 1.21002 0.94999 0.82389 1.00883 1.57755 1.78426 1.22908 1.24379 1.19029 0.97469 0.90898 0.78903 1.21494 0.96363 1.31846 1.06734 0.91975 1.24925 0.96807 0.96027 0.96257 1.69909 1.29307 1.40699 1.13718 0.86615 0.83923 0.79566 0.77697 1.21238 1.20046 1.20199 1.02048 0.72834 0.73340 0.73147 1.93535 1.70524 1.76405 1.57365 1.93641 1.85219 1.30521 1.85622 1.56374 1.29742 1.14052 1.88568 1.20698 0.96767 0.82553 0.94956 0.89746 1.21049 1.01705 0.95774 0.96625 1.22034 0.98078 0.96986 0.99420 1.22058 0.99994 1.00189 0.95912 1.20447 1.01767 0.95543 0.94962 1.21934 0.95914 0.96560 1.02113 0.93126 0.90252 0.92783 0.92301 0.91104 0.94569 0.94775 0.92720 0.75583 0.89528 0.90311 0.87847 0.87991 0.90490 0.90792 0.91216 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.83 37.16 0.37 -2.68 16 2 C 0.13 2.30 5.79 -4.04 -0.02 2.27 16 3 N -0.99 -20.14 2.86 -115.67 -0.33 -20.47 16 4 C 0.26 6.36 5.12 -5.20 -0.03 6.33 16 5 C -0.52 -14.48 8.41 -34.44 -0.29 -14.77 16 6 H 0.06 1.71 6.89 -52.49 -0.36 1.35 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.01 13.29 55.43 0.74 -25.27 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 S 2.78 54.60 5.96 -107.50 -0.64 53.96 16 14 O -0.99 -20.32 16.61 -57.17 -0.95 -21.27 16 15 O -0.97 -23.18 17.11 -57.17 -0.98 -24.16 16 16 N -1.13 -16.59 5.55 -4.71 -0.03 -16.61 16 17 C 0.16 1.99 2.73 -67.71 -0.18 1.80 16 18 H 0.08 1.09 6.24 -51.93 -0.32 0.77 16 19 C -0.11 -1.32 5.73 -28.18 -0.16 -1.49 16 20 C -0.15 -1.47 9.80 -35.90 -0.35 -1.82 16 21 C -0.16 -1.51 9.80 -35.90 -0.35 -1.86 16 22 C -0.09 -0.81 6.12 -28.17 -0.17 -0.98 16 23 C -0.13 -1.32 5.55 -26.51 -0.15 -1.46 16 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 1.57 6.59 -51.93 -0.34 1.23 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.88 6.21 -51.93 -0.32 0.55 16 28 H 0.07 1.12 8.00 -51.93 -0.42 0.71 16 29 H 0.04 0.95 7.61 -51.92 -0.40 0.56 16 30 H 0.03 0.85 8.00 -51.93 -0.42 0.43 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.41 5.31 8.83 -34.47 -0.30 5.01 16 33 H 0.09 1.14 7.88 -51.93 -0.41 0.73 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.10 0.79 8.06 -52.49 -0.42 0.37 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -32.65 334.23 -9.84 -42.49 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -6.23 Total: 2.54 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -1.44 Total: -13.00 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: 0.38 Total: -62.36 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -1.93 Total: -45.43 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 54.60 SS G_CDS: -0.64 Total: 53.96 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.65 -9.84 -42.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337089426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.095 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds