Wall clock time and date at job start Tue Mar 31 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47176 * 2 1 4 4 O 1.42895 * 109.46929 * 120.00107 * 2 1 3 5 5 C 1.35717 * 116.99763 * 83.06987 * 4 2 1 6 6 C 1.39016 * 119.90562 * 175.07942 * 5 4 2 7 7 C 1.37684 * 120.09479 * 179.75844 * 6 5 4 8 8 C 1.39797 * 119.90539 * 0.53779 * 7 6 5 9 9 C 1.47497 * 120.09433 * 179.69494 * 8 7 6 10 10 O 1.21615 * 119.99786 * 148.59781 * 9 8 7 11 11 N 1.34770 * 120.00064 * 328.60451 * 9 8 7 12 12 C 1.36903 * 119.99956 * 0.84335 * 11 9 8 13 13 H 1.07995 * 120.00272 * 310.99333 * 12 11 9 14 14 C 1.39027 * 119.99866 * 130.99438 * 12 11 9 15 15 N 1.31379 * 120.00029 * 162.84668 * 14 12 11 16 16 Si 1.86808 * 119.99928 * 342.84014 * 14 12 11 17 17 H 1.48494 * 109.46571 * 89.94323 * 16 14 12 18 18 H 1.48504 * 109.47029 * 209.94316 * 16 14 12 19 19 H 1.48499 * 109.47029 * 329.94043 * 16 14 12 20 20 C 1.46497 * 120.00189 * 180.84441 * 11 9 8 21 21 C 1.47204 * 109.47179 * 87.42353 * 20 11 9 22 22 N 9.62237 * 109.27433 * 184.15036 * 2 1 3 23 23 C 1.39797 * 119.81238 * 359.72126 * 8 7 6 24 24 C 1.37693 * 119.90435 * 359.97438 * 23 8 7 25 25 H 1.09003 * 109.46833 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46925 * 299.99915 * 1 2 3 27 27 H 1.09002 * 109.47192 * 60.00025 * 1 2 3 28 28 H 1.09003 * 109.47078 * 240.00430 * 2 1 3 29 29 H 1.09005 * 109.46821 * 59.99693 * 3 2 1 30 30 H 1.08993 * 109.47531 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46931 * 300.00495 * 3 2 1 32 32 H 1.08002 * 119.94934 * 0.02562 * 6 5 4 33 33 H 1.07999 * 120.04812 * 180.23341 * 7 6 5 34 34 H 0.97003 * 119.99856 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.47393 * 207.42276 * 20 11 9 36 36 H 1.09007 * 109.47136 * 327.42303 * 20 11 9 37 37 H 1.07996 * 120.05028 * 179.97438 * 23 8 7 38 38 H 1.07998 * 119.95132 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0741 -2.0280 1.1117 6 6 2.6240 -2.7382 2.1727 7 6 2.6902 -4.1125 2.1231 8 6 2.2137 -4.7931 0.9988 9 6 2.2887 -6.2649 0.9383 10 8 1.4425 -6.8924 0.3306 11 7 3.2947 -6.9144 1.5567 12 6 4.2374 -6.2092 2.2554 13 1 4.7175 -5.3542 1.8029 14 6 4.5768 -6.5937 3.5476 15 7 5.6886 -6.1549 4.0930 16 14 3.4519 -7.7343 4.5085 17 1 3.8404 -9.1443 4.2517 18 1 3.5745 -7.4434 5.9596 19 1 2.0466 -7.5217 4.0781 20 6 3.3796 -8.3749 1.4812 21 6 4.1285 -8.7612 0.2741 22 7 4.7063 -9.0592 -0.6574 23 6 1.6664 -4.0747 -0.0683 24 6 1.5983 -2.7008 -0.0078 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 2.9959 -2.2113 3.0390 33 1 3.1141 -4.6637 2.9494 34 1 5.9252 -6.4230 4.9947 35 1 3.8928 -8.7552 2.3643 36 1 2.3749 -8.7954 1.4355 37 1 1.2975 -4.5966 -0.9389 38 1 1.1760 -2.1450 -0.8319 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604455708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:37 Heat of formation + Delta-G solvation = -7.377959 kcal Electronic energy + Delta-G solvation = -22441.062325 eV Core-core repulsion = 19056.783478 eV Total energy + Delta-G solvation = -3384.278847 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16218 -39.22289 -36.94729 -35.94373 -34.92180 -33.22279 -32.21833 -30.60357 -29.86653 -27.72216 -27.24761 -25.21530 -23.19123 -22.40704 -20.76716 -19.52520 -18.61414 -18.00184 -17.14049 -16.09963 -15.73124 -15.42290 -15.22637 -14.79460 -14.21176 -14.09278 -13.73966 -13.68614 -13.35771 -13.05241 -12.78868 -12.68116 -12.61681 -12.43754 -12.31371 -12.11602 -12.01423 -11.70529 -11.53705 -11.40409 -11.09288 -11.05379 -10.63594 -10.46975 -10.30165 -10.22184 -9.46209 -8.89683 -8.51648 -8.07190 -7.75129 -6.66964 -4.41422 1.57941 1.88921 2.89388 3.08384 3.11036 3.15746 3.30702 3.40160 3.54822 3.93336 4.29514 4.41863 4.60171 4.66399 4.78702 4.91062 4.95048 5.21172 5.28596 5.36169 5.47399 5.56704 5.61803 5.62597 5.79158 5.85253 5.91544 5.93944 5.99020 6.03497 6.26939 6.53294 6.68510 6.79893 7.04328 7.11448 7.31331 7.71274 7.80349 8.07498 8.14306 8.69180 9.00473 9.34902 10.40396 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.019606 B = 0.004787 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.792788 B = 5847.181787 C = 6589.643975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.076 3.924 3 C -0.147 4.147 4 O -0.312 6.312 5 C 0.141 3.859 6 C -0.173 4.173 7 C -0.017 4.017 8 C -0.145 4.145 9 C 0.542 3.458 10 O -0.582 6.582 11 N -0.461 5.461 12 C -0.354 4.354 13 H 0.109 0.891 14 C 0.072 3.928 15 N -0.845 5.845 16 Si 0.859 3.141 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.252 1.252 20 C 0.186 3.814 21 C 0.217 3.783 22 N -0.452 5.452 23 C -0.036 4.036 24 C -0.234 4.234 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.173 0.827 34 H 0.280 0.720 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.125 0.875 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.802 10.120 -1.743 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.019 3.981 3 C -0.205 4.205 4 O -0.226 6.226 5 C 0.095 3.905 6 C -0.191 4.191 7 C -0.035 4.035 8 C -0.148 4.148 9 C 0.334 3.666 10 O -0.466 6.466 11 N -0.183 5.183 12 C -0.481 4.481 13 H 0.126 0.874 14 C -0.139 4.139 15 N -0.478 5.478 16 Si 0.684 3.316 17 H -0.192 1.192 18 H -0.204 1.204 19 H -0.175 1.175 20 C 0.060 3.940 21 C -0.102 4.102 22 N -0.132 5.132 23 C -0.055 4.055 24 C -0.252 4.252 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.147 0.853 33 H 0.190 0.810 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.143 0.857 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.159 9.507 -3.083 12.293 hybrid contribution -0.507 -0.433 0.745 1.000 sum -7.666 9.073 -2.338 12.106 Atomic orbital electron populations 1.22407 0.95306 1.03366 1.02797 1.22383 0.94217 0.93570 0.87905 1.21836 1.02186 0.93681 1.02760 1.86064 1.80918 1.16756 1.38849 1.19268 0.94710 0.81829 0.94655 1.20505 1.05863 0.93976 0.98800 1.22276 0.89924 0.92489 0.98796 1.19652 1.05358 0.93148 0.96666 1.18409 0.80474 0.87511 0.80221 1.90667 1.40701 1.68750 1.46435 1.43417 1.24093 1.02751 1.48065 1.19070 1.18098 1.14834 0.96111 0.87382 1.25498 0.95204 0.96641 0.96512 1.69706 1.19685 1.42367 1.16053 0.87114 0.83096 0.81035 0.80336 1.19199 1.20398 1.17519 1.19376 0.99132 0.85669 0.89786 1.29925 0.92917 0.92643 0.94679 1.81014 1.10900 1.09280 1.11956 1.20929 0.94448 0.92731 0.97399 1.21006 1.09898 0.95111 0.99232 0.91477 0.91551 0.91312 0.90906 0.91572 0.91620 0.90777 0.85330 0.80966 0.90914 0.87006 0.86850 0.85706 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 9.13 37.16 0.34 -1.38 16 2 C 0.08 0.82 2.85 -26.73 -0.08 0.74 16 3 C -0.15 -1.27 9.56 37.16 0.36 -0.91 16 4 O -0.31 -4.52 9.80 -18.86 -0.18 -4.70 16 5 C 0.14 2.28 6.59 -39.01 -0.26 2.02 16 6 C -0.17 -3.00 9.97 -39.50 -0.39 -3.40 16 7 C -0.02 -0.33 7.97 -39.20 -0.31 -0.64 16 8 C -0.15 -2.93 5.54 -104.96 -0.58 -3.51 16 9 C 0.54 12.03 7.38 -12.49 -0.09 11.93 16 10 O -0.58 -13.72 16.35 5.26 0.09 -13.63 16 11 N -0.46 -10.12 1.92 -119.13 -0.23 -10.34 16 12 C -0.35 -8.19 6.28 -14.99 -0.09 -8.29 16 13 H 0.11 2.74 7.14 -52.49 -0.37 2.36 16 14 C 0.07 1.65 4.88 -17.45 -0.09 1.56 16 15 N -0.85 -20.83 13.96 55.50 0.77 -20.05 16 16 Si 0.86 17.24 25.48 -169.99 -4.33 12.91 16 17 H -0.27 -5.03 6.63 56.52 0.37 -4.65 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.25 -5.05 7.11 56.52 0.40 -4.65 16 20 C 0.19 3.67 4.56 -6.83 -0.03 3.63 16 21 C 0.22 4.55 15.75 -20.76 -0.33 4.22 16 22 N -0.45 -10.06 18.54 42.15 0.78 -9.28 16 23 C -0.04 -0.64 9.59 -39.20 -0.38 -1.02 16 24 C -0.23 -3.64 8.14 -39.50 -0.32 -3.96 16 25 H 0.07 0.71 6.74 -51.93 -0.35 0.36 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.77 6.38 -51.93 -0.33 0.44 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 33 H 0.17 3.56 5.17 -52.49 -0.27 3.28 16 34 H 0.28 6.45 8.31 -40.82 -0.34 6.11 16 35 H 0.11 2.10 4.47 -51.93 -0.23 1.86 16 36 H 0.11 2.01 7.49 -51.93 -0.39 1.62 16 37 H 0.12 2.14 7.94 -52.49 -0.42 1.72 16 38 H 0.13 1.60 5.35 -52.49 -0.28 1.31 16 LS Contribution 322.83 15.07 4.87 4.87 Total: -1.00 -27.57 322.83 -4.84 -32.41 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -4.34 Total: 6.80 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -2.25 Total: 1.02 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 1.33 Total: -39.67 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.10 Total: -18.33 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -4.33 Total: 12.91 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.57 -4.84 -32.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604455708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.033 kcal (2) G-P(sol) polarization free energy of solvation -27.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds