Wall clock time and date at job start Tue Mar 31 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47176 * 2 1 4 4 O 1.42895 * 109.46929 * 120.00107 * 2 1 3 5 5 C 1.35717 * 116.99763 * 83.06987 * 4 2 1 6 6 C 1.39016 * 119.90562 * 175.07942 * 5 4 2 7 7 C 1.37684 * 120.09479 * 179.75844 * 6 5 4 8 8 C 1.39797 * 119.90539 * 0.53779 * 7 6 5 9 9 C 1.47497 * 120.09433 * 179.69494 * 8 7 6 10 10 O 1.21615 * 119.99786 * 148.59781 * 9 8 7 11 11 N 1.34770 * 120.00064 * 328.60451 * 9 8 7 12 12 C 1.36903 * 119.99956 * 0.84335 * 11 9 8 13 13 H 1.07995 * 120.00272 * 310.99333 * 12 11 9 14 14 C 1.39027 * 119.99866 * 130.99438 * 12 11 9 15 15 N 1.31379 * 120.00029 * 162.84668 * 14 12 11 16 16 Si 1.86808 * 119.99928 * 342.84014 * 14 12 11 17 17 H 1.48494 * 109.46571 * 89.94323 * 16 14 12 18 18 H 1.48504 * 109.47029 * 209.94316 * 16 14 12 19 19 H 1.48499 * 109.47029 * 329.94043 * 16 14 12 20 20 C 1.46497 * 120.00189 * 180.84441 * 11 9 8 21 21 C 1.47204 * 109.47179 * 87.42353 * 20 11 9 22 22 N 9.62237 * 109.27433 * 184.15036 * 2 1 3 23 23 C 1.39797 * 119.81238 * 359.72126 * 8 7 6 24 24 C 1.37693 * 119.90435 * 359.97438 * 23 8 7 25 25 H 1.09003 * 109.46833 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46925 * 299.99915 * 1 2 3 27 27 H 1.09002 * 109.47192 * 60.00025 * 1 2 3 28 28 H 1.09003 * 109.47078 * 240.00430 * 2 1 3 29 29 H 1.09005 * 109.46821 * 59.99693 * 3 2 1 30 30 H 1.08993 * 109.47531 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46931 * 300.00495 * 3 2 1 32 32 H 1.08002 * 119.94934 * 0.02562 * 6 5 4 33 33 H 1.07999 * 120.04812 * 180.23341 * 7 6 5 34 34 H 0.97003 * 119.99856 * 179.97438 * 15 14 12 35 35 H 1.08997 * 109.47393 * 207.42276 * 20 11 9 36 36 H 1.09007 * 109.47136 * 327.42303 * 20 11 9 37 37 H 1.07996 * 120.05028 * 179.97438 * 23 8 7 38 38 H 1.07998 * 119.95132 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0741 -2.0280 1.1117 6 6 2.6240 -2.7382 2.1727 7 6 2.6902 -4.1125 2.1231 8 6 2.2137 -4.7931 0.9988 9 6 2.2887 -6.2649 0.9383 10 8 1.4425 -6.8924 0.3306 11 7 3.2947 -6.9144 1.5567 12 6 4.2374 -6.2092 2.2554 13 1 4.7175 -5.3542 1.8029 14 6 4.5768 -6.5937 3.5476 15 7 5.6886 -6.1549 4.0930 16 14 3.4519 -7.7343 4.5085 17 1 3.8404 -9.1443 4.2517 18 1 3.5745 -7.4434 5.9596 19 1 2.0466 -7.5217 4.0781 20 6 3.3796 -8.3749 1.4812 21 6 4.1285 -8.7612 0.2741 22 7 4.7063 -9.0592 -0.6574 23 6 1.6664 -4.0747 -0.0683 24 6 1.5983 -2.7008 -0.0078 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 2.9959 -2.2113 3.0390 33 1 3.1141 -4.6637 2.9494 34 1 5.9252 -6.4230 4.9947 35 1 3.8928 -8.7552 2.3643 36 1 2.3749 -8.7954 1.4355 37 1 1.2975 -4.5966 -0.9389 38 1 1.1760 -2.1450 -0.8319 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604455708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:37 Heat of formation + Delta-G solvation = -22.319218 kcal Electronic energy + Delta-G solvation = -22441.710227 eV Core-core repulsion = 19056.783478 eV Total energy + Delta-G solvation = -3384.926748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.53276 -40.69853 -38.31670 -37.63024 -36.66892 -34.15020 -34.00883 -31.99607 -31.27582 -29.17342 -28.08923 -26.96898 -24.43454 -23.81076 -21.88735 -21.11793 -20.32273 -19.20552 -18.69314 -17.66032 -17.38484 -16.60574 -16.42342 -16.33511 -15.72610 -15.43595 -15.38307 -14.95999 -14.71478 -14.46153 -14.24050 -14.18319 -13.92461 -13.75301 -13.56718 -13.25701 -13.10465 -13.04808 -12.94942 -12.79005 -12.65177 -12.18163 -12.00270 -11.89203 -11.62738 -11.49075 -11.17165 -10.62575 -9.97726 -9.78717 -9.10767 -8.45820 -6.24261 0.13472 0.50745 1.29909 1.42442 1.45516 1.56277 1.72784 1.92904 2.24960 2.24972 2.69481 2.81728 2.97045 3.24534 3.81824 3.93438 3.98560 4.03386 4.05718 4.21281 4.24240 4.40581 4.42440 4.53671 4.72467 4.73745 4.86074 4.91127 4.99122 5.15018 5.21616 5.30014 5.33547 5.37434 5.40469 5.66972 5.87572 6.04942 6.20355 6.46174 6.51062 6.91376 7.22556 7.59558 8.64897 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.019606 B = 0.004787 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.792788 B = 5847.181787 C = 6589.643975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.062 3.938 3 C -0.145 4.145 4 O -0.320 6.320 5 C 0.151 3.849 6 C -0.182 4.182 7 C -0.024 4.024 8 C -0.177 4.177 9 C 0.538 3.462 10 O -0.600 6.600 11 N -0.468 5.468 12 C -0.347 4.347 13 H 0.077 0.923 14 C 0.043 3.957 15 N -0.886 5.886 16 Si 0.906 3.094 17 H -0.240 1.240 18 H -0.280 1.280 19 H -0.252 1.252 20 C 0.184 3.816 21 C 0.228 3.772 22 N -0.477 5.477 23 C -0.038 4.038 24 C -0.222 4.222 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.137 0.863 33 H 0.154 0.846 34 H 0.284 0.716 35 H 0.125 0.875 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.224 11.030 -2.223 14.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.007 3.993 3 C -0.202 4.202 4 O -0.234 6.234 5 C 0.105 3.895 6 C -0.201 4.201 7 C -0.042 4.042 8 C -0.180 4.180 9 C 0.331 3.669 10 O -0.485 6.485 11 N -0.189 5.189 12 C -0.474 4.474 13 H 0.094 0.906 14 C -0.164 4.164 15 N -0.520 5.520 16 Si 0.728 3.272 17 H -0.165 1.165 18 H -0.206 1.206 19 H -0.175 1.175 20 C 0.058 3.942 21 C -0.090 4.090 22 N -0.156 5.156 23 C -0.057 4.057 24 C -0.240 4.240 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.155 0.845 33 H 0.171 0.829 34 H 0.094 0.906 35 H 0.143 0.857 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.577 10.419 -3.574 13.961 hybrid contribution -0.089 -0.515 0.820 0.972 sum -8.666 9.905 -2.754 13.446 Atomic orbital electron populations 1.22399 0.93986 1.03035 1.04149 1.22809 0.95365 0.94442 0.86693 1.21873 1.01854 0.92264 1.04162 1.86080 1.80781 1.15592 1.40976 1.19277 0.93300 0.82851 0.94052 1.20586 1.06222 0.93411 0.99861 1.22013 0.90651 0.93302 0.98252 1.19691 1.07771 0.92390 0.98100 1.18777 0.80119 0.88436 0.79585 1.90634 1.41282 1.69378 1.47206 1.43458 1.23784 1.03667 1.48024 1.18713 1.17714 1.14461 0.96530 0.90586 1.25957 0.95828 0.97879 0.96784 1.69776 1.21321 1.44256 1.16633 0.86369 0.81264 0.80731 0.78819 1.16468 1.20554 1.17497 1.19632 1.00479 0.84412 0.89658 1.30156 0.92355 0.91973 0.94566 1.81015 1.11795 1.10083 1.12754 1.21065 0.94071 0.93696 0.96901 1.21264 1.08663 0.94259 0.99799 0.92599 0.91634 0.88620 0.90333 0.91508 0.92214 0.88050 0.84480 0.82874 0.90574 0.85748 0.84458 0.85143 0.82491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 9.13 71.98 0.66 -2.17 16 2 C 0.06 1.18 2.85 30.60 0.09 1.27 16 3 C -0.14 -2.07 9.56 71.98 0.69 -1.38 16 4 O -0.32 -8.70 9.80 -90.38 -0.89 -9.58 16 5 C 0.15 4.71 6.59 22.64 0.15 4.86 16 6 C -0.18 -6.35 9.97 22.33 0.22 -6.13 16 7 C -0.02 -0.95 7.97 22.52 0.18 -0.77 16 8 C -0.18 -7.20 5.54 -20.08 -0.11 -7.31 16 9 C 0.54 23.98 7.38 86.69 0.64 24.62 16 10 O -0.60 -28.08 16.35 -4.08 -0.07 -28.14 16 11 N -0.47 -20.53 1.92 -649.08 -1.24 -21.77 16 12 C -0.35 -16.40 6.28 84.09 0.53 -15.87 16 13 H 0.08 4.05 7.14 -2.91 -0.02 4.03 16 14 C 0.04 1.97 4.88 84.95 0.41 2.39 16 15 N -0.89 -44.40 13.96 21.68 0.30 -44.09 16 16 Si 0.91 34.66 25.48 68.60 1.75 36.41 16 17 H -0.24 -8.19 6.63 99.48 0.66 -7.53 16 18 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 19 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 20 C 0.18 7.01 4.56 84.58 0.39 7.40 16 21 C 0.23 9.40 15.75 89.44 1.41 10.81 16 22 N -0.48 -21.02 18.54 20.01 0.37 -20.65 16 23 C -0.04 -1.34 9.59 22.52 0.22 -1.12 16 24 C -0.22 -6.50 8.14 22.33 0.18 -6.32 16 25 H 0.05 1.02 6.74 -2.39 -0.02 1.00 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 1.41 6.38 -2.39 -0.02 1.40 16 29 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 33 H 0.15 6.61 5.17 -2.91 -0.02 6.59 16 34 H 0.28 13.24 8.31 -92.71 -0.77 12.47 16 35 H 0.13 4.43 4.47 -2.39 -0.01 4.42 16 36 H 0.14 4.61 7.49 -2.38 -0.02 4.59 16 37 H 0.13 4.36 7.94 -2.91 -0.02 4.34 16 38 H 0.16 3.53 5.35 -2.91 -0.02 3.51 16 Total: -1.00 -59.45 322.83 6.92 -52.53 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 1.05 Total: 25.03 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 5.65 Total: 10.27 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -0.57 Total: -86.51 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.95 Total: -37.73 kcal Atomic # 14 Polarization: 34.66 SS G_CDS: 1.75 Total: 36.41 kcal Total: -59.45 6.92 -52.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604455708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.207 kcal (2) G-P(sol) polarization free energy of solvation -59.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds