Wall clock time and date at job start Tue Mar 31 2020 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35770 * 117.00292 * 2 1 4 4 C 1.38075 * 120.20088 * 0.02562 * 3 2 1 5 5 C 1.38746 * 120.40356 * 179.97438 * 4 3 2 6 6 C 1.37771 * 120.72375 * 359.97438 * 5 4 3 7 7 C 1.39168 * 120.07301 * 0.02562 * 6 5 4 8 8 N 1.37535 * 133.05386 * 180.02562 * 7 6 5 9 9 H 0.96999 * 125.62763 * 359.97438 * 8 7 6 10 10 C 1.38284 * 108.74183 * 179.97438 * 8 7 6 11 11 C 1.46918 * 125.45445 * 180.02562 * 10 8 7 12 12 O 1.21669 * 120.00422 * 180.02562 * 11 10 8 13 13 N 1.34781 * 120.00047 * 0.03075 * 11 10 8 14 14 C 1.46500 * 120.00238 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47086 * 34.99710 * 14 13 11 16 16 C 1.52995 * 109.46835 * 274.99456 * 14 13 11 17 17 C 1.50698 * 109.46975 * 154.99023 * 14 13 11 18 18 H 1.08003 * 120.00248 * 35.01088 * 17 14 13 19 19 C 1.37879 * 120.00061 * 215.00078 * 17 14 13 20 20 N 1.31514 * 120.00065 * 184.92370 * 19 17 14 21 21 Si 1.86799 * 120.00086 * 4.91820 * 19 17 14 22 22 H 1.48496 * 109.46932 * 84.83083 * 21 19 17 23 23 H 1.48491 * 109.47212 * 204.83377 * 21 19 17 24 24 H 1.48507 * 109.46996 * 324.83552 * 21 19 17 25 25 C 1.35932 * 109.09333 * 0.26340 * 10 8 7 26 26 C 1.40555 * 120.20320 * 179.97438 * 3 2 1 27 27 H 1.09010 * 109.46831 * 299.99709 * 1 2 3 28 28 H 1.08992 * 109.47220 * 59.99572 * 1 2 3 29 29 H 1.08995 * 109.47328 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.80317 * 359.95354 * 4 3 2 31 31 H 1.08007 * 119.63954 * 179.97438 * 5 4 3 32 32 H 1.07997 * 119.96061 * 180.02562 * 6 5 4 33 33 H 0.97001 * 119.99924 * 359.97438 * 13 11 10 34 34 H 1.09002 * 109.47365 * 295.03446 * 16 14 13 35 35 H 1.09001 * 109.46944 * 175.03330 * 16 14 13 36 36 H 1.08998 * 109.47309 * 55.04126 * 16 14 13 37 37 H 0.96997 * 119.99915 * 179.97438 * 20 19 17 38 38 H 1.08007 * 126.12767 * 179.73725 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 6 1.2976 2.3703 0.0005 5 6 1.9231 3.6088 0.0011 6 6 3.2976 3.7030 0.0016 7 6 4.0758 2.5492 0.0011 8 7 5.4340 2.3327 0.0019 9 1 6.1161 3.0224 0.0026 10 6 5.6666 0.9696 0.0013 11 6 6.9896 0.3309 0.0024 12 8 7.0795 -0.8825 0.0013 13 7 8.1040 1.0890 0.0047 14 6 9.4233 0.4521 0.0063 15 1 9.3855 -0.4635 -0.5838 16 6 9.8257 0.1164 1.4437 17 6 10.4364 1.3937 -0.5921 18 1 10.3476 2.4576 -0.4285 19 6 11.4767 0.8971 -1.3485 20 7 12.4142 1.7071 -1.7896 21 14 11.5548 -0.9263 -1.7465 22 1 10.7300 -1.2061 -2.9493 23 1 12.9632 -1.3155 -2.0106 24 1 11.0329 -1.7069 -0.5960 25 6 4.4752 0.3152 -0.0057 26 6 3.4488 1.2882 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 0.2190 2.3140 0.0002 31 1 1.3261 4.5088 0.0011 32 1 3.7717 4.6734 0.0024 33 1 8.0325 2.0564 0.0052 34 1 9.9494 1.0387 2.0113 35 1 10.7655 -0.4358 1.4384 36 1 9.0489 -0.4931 1.9055 37 1 13.1463 1.3577 -2.3214 38 1 4.3370 -0.7560 -0.0118 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906460430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:01 Heat of formation + Delta-G solvation = -19.973979 kcal Electronic energy + Delta-G solvation = -21937.189391 eV Core-core repulsion = 18552.364340 eV Total energy + Delta-G solvation = -3384.825051 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.58843 -39.47169 -38.55786 -36.05015 -35.02115 -32.50141 -31.81109 -30.37392 -29.07920 -28.75950 -27.32601 -25.38839 -23.86307 -22.02087 -21.53936 -20.38275 -19.66991 -18.87307 -17.87861 -16.64482 -16.27346 -15.94276 -15.78804 -15.38516 -15.34764 -14.83537 -14.38554 -13.76374 -13.69208 -13.59536 -13.12353 -12.90080 -12.60642 -12.57171 -12.40333 -12.08000 -11.63945 -11.55187 -11.20755 -11.14540 -10.99176 -10.87563 -10.64987 -9.93844 -9.51476 -9.50447 -9.28149 -8.76886 -8.42502 -8.20329 -7.47154 -6.29610 -4.34474 0.86282 1.48449 2.26578 2.87503 3.18893 3.23514 3.31638 3.38660 3.70681 3.78435 3.82900 4.27975 4.66611 4.77984 4.90188 4.94109 4.96818 5.06772 5.19091 5.25075 5.28710 5.35661 5.53778 5.74095 6.01235 6.14672 6.26043 6.35713 6.45648 6.48455 6.59679 6.61025 6.80630 6.86207 7.10300 7.27548 7.30422 7.40928 7.43369 8.02880 8.42669 8.67961 8.77095 9.31623 10.81833 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.028706 B = 0.003547 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.172043 B = 7892.711231 C = 8424.307185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.185 3.815 4 C -0.253 4.253 5 C -0.053 4.053 6 C -0.170 4.170 7 C 0.145 3.855 8 N -0.573 5.573 9 H 0.422 0.578 10 C 0.022 3.978 11 C 0.568 3.432 12 O -0.538 6.538 13 N -0.699 5.699 14 C 0.231 3.769 15 H 0.053 0.947 16 C -0.148 4.148 17 C -0.534 4.534 18 H 0.078 0.922 19 C 0.082 3.918 20 N -0.887 5.887 21 Si 0.874 3.126 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.259 1.259 25 C -0.100 4.100 26 C -0.140 4.140 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.388 0.612 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.031 0.969 37 H 0.269 0.731 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.368 3.103 3.999 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.139 3.861 4 C -0.273 4.273 5 C -0.073 4.073 6 C -0.191 4.191 7 C 0.033 3.967 8 N -0.178 5.178 9 H 0.261 0.739 10 C -0.087 4.087 11 C 0.352 3.648 12 O -0.416 6.416 13 N -0.346 5.346 14 C 0.129 3.871 15 H 0.071 0.929 16 C -0.207 4.207 17 C -0.572 4.572 18 H 0.096 0.904 19 C -0.123 4.123 20 N -0.523 5.523 21 Si 0.701 3.299 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.183 1.183 25 C -0.126 4.126 26 C -0.145 4.145 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.221 0.779 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.079 0.921 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.793 2.078 3.887 22.234 hybrid contribution 0.205 0.195 -0.321 0.428 sum -21.588 2.273 3.566 21.998 Atomic orbital electron populations 1.23071 0.78405 1.03909 1.01382 1.86066 1.21275 1.27090 1.87801 1.18466 0.89779 0.84274 0.93594 1.20821 0.99606 0.91881 1.15030 1.20515 0.93189 0.96859 0.96759 1.19924 0.93137 0.95501 1.10504 1.18013 0.82921 0.94530 1.01237 1.42058 1.05591 1.06787 1.63342 0.73903 1.20576 0.95760 0.82021 1.10348 1.17290 0.82479 0.87031 0.77974 1.90803 1.86364 1.12926 1.51537 1.46640 1.06787 1.09439 1.71763 1.19200 0.78931 0.94950 0.93997 0.92887 1.22224 0.99932 1.00032 0.98528 1.20974 1.08562 0.94774 1.32853 0.90357 1.24941 0.94973 0.98099 0.94244 1.69875 1.11795 1.35551 1.35053 0.86887 0.77402 0.85530 0.80121 1.19718 1.21069 1.18346 1.20765 0.88708 0.99512 1.03642 1.17360 0.90443 0.93432 1.13300 0.92587 0.92566 0.88280 0.85530 0.85499 0.85869 0.77882 0.93371 0.92661 0.95035 0.92121 0.82676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.77 10.50 -19.02 -0.20 -3.97 16 3 C 0.19 2.40 6.73 -38.77 -0.26 2.14 16 4 C -0.25 -2.63 9.03 -39.45 -0.36 -2.98 16 5 C -0.05 -0.52 10.01 -39.56 -0.40 -0.91 16 6 C -0.17 -1.84 10.06 -39.41 -0.40 -2.24 16 7 C 0.14 1.95 7.25 -83.98 -0.61 1.34 16 8 N -0.57 -7.78 6.08 -7.36 -0.04 -7.82 16 9 H 0.42 4.65 8.12 -40.82 -0.33 4.32 16 10 C 0.02 0.37 6.97 -82.27 -0.57 -0.20 16 11 C 0.57 11.36 7.76 -12.74 -0.10 11.26 16 12 O -0.54 -12.57 16.50 5.22 0.09 -12.49 16 13 N -0.70 -13.97 5.07 -56.17 -0.28 -14.26 16 14 C 0.23 5.44 2.22 -69.09 -0.15 5.29 16 15 H 0.05 1.36 4.73 -51.93 -0.25 1.12 16 16 C -0.15 -3.22 9.47 37.15 0.35 -2.87 16 17 C -0.53 -14.10 9.05 -34.44 -0.31 -14.41 16 18 H 0.08 2.16 8.06 -52.48 -0.42 1.74 16 19 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 20 N -0.89 -25.77 13.96 55.43 0.77 -25.00 16 21 Si 0.87 21.36 26.99 -169.99 -4.59 16.77 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.26 -6.23 6.82 56.52 0.39 -5.84 16 25 C -0.10 -1.64 10.52 -39.20 -0.41 -2.05 16 26 C -0.14 -2.08 6.11 -106.83 -0.65 -2.73 16 27 H 0.06 0.33 7.66 -51.92 -0.40 -0.06 16 28 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 29 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.13 0.98 6.28 -52.49 -0.33 0.65 16 31 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.39 6.67 7.65 -40.82 -0.31 6.35 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.16 2.51 8.06 -52.48 -0.42 2.09 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -32.62 325.78 -6.87 -39.49 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.55 Total: 7.36 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.97 Total: -5.01 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.44 Total: -47.08 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.11 Total: -16.45 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.59 Total: 16.77 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.62 -6.87 -39.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906460430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.521 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds