Wall clock time and date at job start Tue Mar 31 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81405 * 102.99949 * 2 1 4 4 C 1.52997 * 109.46942 * 179.97438 * 3 2 1 5 5 O 1.42907 * 109.47036 * 179.97438 * 4 3 2 6 6 N 1.41606 * 113.99934 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99491 * 180.02562 * 6 5 4 8 8 O 1.21583 * 120.00411 * 5.06629 * 7 6 5 9 9 N 1.34780 * 119.99423 * 185.06694 * 7 6 5 10 10 C 1.46928 * 120.62581 * 174.96142 * 9 7 6 11 11 C 1.53202 * 108.89184 * 233.55807 * 10 9 7 12 12 C 1.53073 * 109.29492 * 305.58239 * 11 10 9 13 13 C 1.50700 * 109.44161 * 181.23713 * 12 11 10 14 14 H 1.08002 * 120.00045 * 239.79537 * 13 12 11 15 15 C 1.37877 * 119.99893 * 59.79052 * 13 12 11 16 16 N 1.31505 * 120.00278 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99912 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.46777 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47113 * 120.00135 * 17 15 13 20 20 H 1.48499 * 109.46950 * 240.00502 * 17 15 13 21 21 C 1.53041 * 109.66034 * 61.15060 * 12 11 10 22 22 C 1.46925 * 120.63310 * 354.99004 * 9 7 6 23 23 H 1.08993 * 109.47168 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47263 * 300.00145 * 1 2 3 25 25 H 1.09004 * 109.46939 * 60.00068 * 1 2 3 26 26 H 1.08996 * 109.47198 * 59.99704 * 3 2 1 27 27 H 1.08997 * 109.47093 * 300.00104 * 3 2 1 28 28 H 1.09000 * 109.47530 * 60.00355 * 4 3 2 29 29 H 1.09003 * 109.47550 * 299.99620 * 4 3 2 30 30 H 0.97000 * 119.99957 * 0.02562 * 6 5 4 31 31 H 1.08993 * 109.59102 * 353.41519 * 10 9 7 32 32 H 1.08994 * 109.58546 * 113.70710 * 10 9 7 33 33 H 1.09004 * 109.49685 * 65.39112 * 11 10 9 34 34 H 1.09001 * 109.49605 * 185.48615 * 11 10 9 35 35 H 1.08998 * 109.34991 * 301.12644 * 12 11 10 36 36 H 0.97005 * 120.00335 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.50055 * 178.74392 * 21 12 11 38 38 H 1.09003 * 109.52015 * 58.66906 * 21 12 11 39 39 H 1.08998 * 109.58087 * 246.15593 * 22 9 7 40 40 H 1.09000 * 109.58507 * 6.43400 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9400 0.0006 5 8 4.0638 3.3324 0.0000 6 7 5.4538 3.6026 0.0011 7 6 5.8925 4.8769 0.0013 8 8 5.0986 5.7932 0.0934 9 7 7.2113 5.1355 -0.1008 10 6 7.6965 6.5178 -0.2129 11 6 8.5944 6.6296 -1.4492 12 6 9.7019 5.5762 -1.3669 13 6 10.6051 5.7031 -2.5666 14 1 10.7245 4.8698 -3.2432 15 6 11.2789 6.8831 -2.8004 16 7 11.1339 7.8976 -1.9763 17 14 12.3979 7.0407 -4.2879 18 1 12.3880 5.7672 -5.0519 19 1 11.9133 8.1427 -5.1573 20 1 13.7814 7.3374 -3.8373 21 6 9.0813 4.1775 -1.3416 22 6 8.1910 4.0405 -0.1026 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8031 2.2372 0.8899 27 1 1.8031 2.2371 -0.8899 28 1 4.1616 1.4703 -0.8891 29 1 4.1609 1.4705 0.8909 30 1 6.0902 2.8705 0.0018 31 1 6.8490 7.1955 -0.3145 32 1 8.2678 6.7779 0.6781 33 1 7.9999 6.4603 -2.3471 34 1 9.0377 7.6246 -1.4881 35 1 10.2821 5.7324 -0.4575 36 1 11.6082 8.7276 -2.1406 37 1 9.8727 3.4289 -1.3055 38 1 8.4810 4.0291 -2.2393 39 1 8.8046 4.0978 0.7964 40 1 7.6695 3.0837 -0.1287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793248564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:45 Heat of formation + Delta-G solvation = -20.609408 kcal Electronic energy + Delta-G solvation = -20758.275845 eV Core-core repulsion = 17508.867190 eV Total energy + Delta-G solvation = -3249.408654 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.88972 -37.82944 -36.59417 -33.72588 -32.91320 -31.24766 -30.66823 -29.55555 -29.25959 -26.09931 -23.56795 -23.15751 -22.31139 -20.50004 -19.03179 -18.47591 -17.39771 -16.40272 -16.39691 -16.35632 -15.34041 -15.01083 -14.56706 -14.44641 -14.20428 -14.11650 -13.75468 -13.25627 -13.13111 -12.79759 -12.71096 -12.53742 -12.36776 -12.28132 -11.86507 -11.16214 -11.08205 -10.95957 -10.65035 -10.52840 -10.45679 -10.08949 -9.83776 -9.58404 -9.23081 -8.96916 -8.84653 -8.38357 -8.17283 -7.97739 -6.03117 -4.09795 0.91534 1.85628 2.08688 3.27375 3.36096 3.39047 3.50402 3.80918 4.34104 4.39803 4.40472 4.56630 4.67251 4.69235 4.89380 5.18824 5.22505 5.23991 5.26919 5.34717 5.69217 5.74292 5.96917 6.22679 6.38046 6.45561 6.56551 6.68729 6.84132 6.93323 7.04631 7.20216 7.42263 7.69547 7.90978 8.03324 8.15611 8.38622 8.89121 8.93675 9.55508 11.02334 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.033839 B = 0.002725 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.258864 B =10273.654132 C =10695.306368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.243 6.243 3 C -0.084 4.084 4 C 0.049 3.951 5 O -0.130 6.130 6 N -0.617 5.617 7 C 0.722 3.278 8 O -0.581 6.581 9 N -0.609 5.609 10 C 0.129 3.871 11 C -0.124 4.124 12 C 0.048 3.952 13 C -0.513 4.513 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.124 4.124 22 C 0.112 3.888 23 H 0.105 0.895 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.403 0.597 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.039 0.961 34 H 0.106 0.894 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.211 -14.405 5.416 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.019 6.019 3 C -0.234 4.234 4 C -0.030 4.030 5 O -0.133 6.133 6 N -0.326 5.326 7 C 0.425 3.575 8 O -0.458 6.458 9 N -0.350 5.350 10 C 0.008 3.992 11 C -0.163 4.163 12 C 0.030 3.970 13 C -0.551 4.551 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.528 5.528 17 Si 0.718 3.282 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.163 4.163 22 C -0.012 4.012 23 H 0.123 0.877 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.246 0.754 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.124 0.876 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.226 -14.249 5.496 21.565 hybrid contribution 0.049 0.412 -0.850 0.946 sum -15.177 -13.836 4.646 21.056 Atomic orbital electron populations 1.23419 0.93195 1.06836 1.05400 1.86817 1.08206 1.08693 1.98171 1.23114 0.97648 0.95620 1.06997 1.22486 0.94100 0.83711 1.02656 1.90520 1.02806 1.22421 1.97571 1.46428 0.94870 1.07264 1.83999 1.15295 0.83003 0.80944 0.78288 1.90890 1.53995 1.43263 1.57654 1.47391 1.02145 1.09219 1.76235 1.21858 0.98147 0.78979 1.00233 1.22070 0.95772 1.05029 0.93421 1.18641 0.92570 0.88168 0.97627 1.21208 1.25638 0.98617 1.09659 0.92673 1.24965 0.96674 0.95940 0.96421 1.69843 1.42635 1.03598 1.36751 0.86565 0.80544 0.78044 0.82998 1.19878 1.21051 1.21065 1.22025 0.97634 1.01539 0.95065 1.21782 0.91143 0.87478 1.00754 0.87665 0.90138 0.90113 0.88614 0.88565 0.91048 0.91146 0.75380 0.90358 0.92149 0.94227 0.87585 0.95345 0.92963 0.91955 0.92754 0.91378 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.76 101.05 1.09 0.47 16 2 S -0.24 -1.96 22.38 -107.50 -2.41 -4.37 16 3 C -0.08 -0.72 6.31 37.16 0.23 -0.49 16 4 C 0.05 0.49 6.24 37.16 0.23 0.72 16 5 O -0.13 -1.90 11.11 -29.56 -0.33 -2.23 16 6 N -0.62 -9.29 6.30 27.63 0.17 -9.11 16 7 C 0.72 13.71 8.44 -86.92 -0.73 12.97 16 8 O -0.58 -13.33 16.19 -12.79 -0.21 -13.53 16 9 N -0.61 -11.05 2.97 -178.50 -0.53 -11.58 16 10 C 0.13 2.57 6.41 -3.70 -0.02 2.55 16 11 C -0.12 -2.83 5.16 -26.59 -0.14 -2.97 16 12 C 0.05 1.12 2.06 -91.71 -0.19 0.93 16 13 C -0.51 -13.41 8.56 -34.44 -0.29 -13.71 16 14 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 16 N -0.89 -24.44 11.30 55.43 0.63 -23.82 16 17 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.12 -2.31 5.30 -26.61 -0.14 -2.45 16 22 C 0.11 1.71 6.43 -3.71 -0.02 1.69 16 23 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 25 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.40 4.72 6.00 -40.82 -0.24 4.47 16 31 H 0.08 1.61 7.03 -51.93 -0.37 1.25 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.11 2.69 6.03 -51.93 -0.31 2.38 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.66 5.56 -51.93 -0.29 0.37 16 LS Contribution 338.62 15.07 5.10 5.10 Total: -1.00 -31.52 338.62 -8.92 -40.45 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.25 Total: 2.09 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.09 Total: 1.27 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.27 Total: -44.51 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.54 Total: -15.76 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: -1.96 SS G_CDS: -2.41 Total: -4.37 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.52 -8.92 -40.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793248564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.839 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds