Wall clock time and date at job start Tue Mar 31 2020 06:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81405 * 102.99949 * 2 1 4 4 C 1.52997 * 109.46942 * 179.97438 * 3 2 1 5 5 O 1.42907 * 109.47036 * 179.97438 * 4 3 2 6 6 N 1.41606 * 113.99934 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99491 * 180.02562 * 6 5 4 8 8 O 1.21583 * 120.00411 * 5.06629 * 7 6 5 9 9 N 1.34780 * 119.99423 * 185.06694 * 7 6 5 10 10 C 1.46928 * 120.62581 * 174.96142 * 9 7 6 11 11 C 1.53202 * 108.89184 * 233.55807 * 10 9 7 12 12 C 1.53073 * 109.29492 * 305.58239 * 11 10 9 13 13 C 1.50700 * 109.44161 * 181.23713 * 12 11 10 14 14 H 1.08002 * 120.00045 * 239.79537 * 13 12 11 15 15 C 1.37877 * 119.99893 * 59.79052 * 13 12 11 16 16 N 1.31505 * 120.00278 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99912 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.46777 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47113 * 120.00135 * 17 15 13 20 20 H 1.48499 * 109.46950 * 240.00502 * 17 15 13 21 21 C 1.53041 * 109.66034 * 61.15060 * 12 11 10 22 22 C 1.46925 * 120.63310 * 354.99004 * 9 7 6 23 23 H 1.08993 * 109.47168 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47263 * 300.00145 * 1 2 3 25 25 H 1.09004 * 109.46939 * 60.00068 * 1 2 3 26 26 H 1.08996 * 109.47198 * 59.99704 * 3 2 1 27 27 H 1.08997 * 109.47093 * 300.00104 * 3 2 1 28 28 H 1.09000 * 109.47530 * 60.00355 * 4 3 2 29 29 H 1.09003 * 109.47550 * 299.99620 * 4 3 2 30 30 H 0.97000 * 119.99957 * 0.02562 * 6 5 4 31 31 H 1.08993 * 109.59102 * 353.41519 * 10 9 7 32 32 H 1.08994 * 109.58546 * 113.70710 * 10 9 7 33 33 H 1.09004 * 109.49685 * 65.39112 * 11 10 9 34 34 H 1.09001 * 109.49605 * 185.48615 * 11 10 9 35 35 H 1.08998 * 109.34991 * 301.12644 * 12 11 10 36 36 H 0.97005 * 120.00335 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.50055 * 178.74392 * 21 12 11 38 38 H 1.09003 * 109.52015 * 58.66906 * 21 12 11 39 39 H 1.08998 * 109.58087 * 246.15593 * 22 9 7 40 40 H 1.09000 * 109.58507 * 6.43400 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 3.7423 1.9400 0.0006 5 8 4.0638 3.3324 0.0000 6 7 5.4538 3.6026 0.0011 7 6 5.8925 4.8769 0.0013 8 8 5.0986 5.7932 0.0934 9 7 7.2113 5.1355 -0.1008 10 6 7.6965 6.5178 -0.2129 11 6 8.5944 6.6296 -1.4492 12 6 9.7019 5.5762 -1.3669 13 6 10.6051 5.7031 -2.5666 14 1 10.7245 4.8698 -3.2432 15 6 11.2789 6.8831 -2.8004 16 7 11.1339 7.8976 -1.9763 17 14 12.3979 7.0407 -4.2879 18 1 12.3880 5.7672 -5.0519 19 1 11.9133 8.1427 -5.1573 20 1 13.7814 7.3374 -3.8373 21 6 9.0813 4.1775 -1.3416 22 6 8.1910 4.0405 -0.1026 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8031 2.2372 0.8899 27 1 1.8031 2.2371 -0.8899 28 1 4.1616 1.4703 -0.8891 29 1 4.1609 1.4705 0.8909 30 1 6.0902 2.8705 0.0018 31 1 6.8490 7.1955 -0.3145 32 1 8.2678 6.7779 0.6781 33 1 7.9999 6.4603 -2.3471 34 1 9.0377 7.6246 -1.4881 35 1 10.2821 5.7324 -0.4575 36 1 11.6082 8.7276 -2.1406 37 1 9.8727 3.4289 -1.3055 38 1 8.4810 4.0291 -2.2393 39 1 8.8046 4.0978 0.7964 40 1 7.6695 3.0837 -0.1287 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793248564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:45 Heat of formation + Delta-G solvation = -38.996753 kcal Electronic energy + Delta-G solvation = -20759.073180 eV Core-core repulsion = 17508.867190 eV Total energy + Delta-G solvation = -3250.205989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.33934 -39.03336 -38.10762 -35.45855 -34.18378 -32.85024 -32.00664 -30.81600 -29.77195 -27.90320 -24.84858 -24.38306 -23.87703 -22.05121 -20.50566 -19.77275 -18.70979 -18.31954 -17.30692 -17.09777 -16.73563 -16.47640 -16.30869 -15.57097 -15.16017 -14.86500 -14.80799 -14.66283 -14.54455 -14.21282 -14.04263 -13.67352 -13.48885 -13.26152 -13.08535 -12.94686 -12.82284 -12.42807 -12.15263 -12.02314 -11.92232 -11.46478 -11.37700 -11.10513 -10.94777 -10.78901 -10.38937 -10.16200 -9.46567 -8.77617 -8.05369 -6.18529 0.14333 0.87821 1.41665 1.45134 1.52047 1.54495 2.03754 2.45762 2.47733 3.21722 3.48162 3.71643 3.72063 4.03505 4.17403 4.23004 4.31748 4.32346 4.34501 4.48856 4.51323 4.58272 4.62463 4.72913 4.88730 4.90938 4.98486 5.18503 5.23610 5.39549 5.47809 5.62000 5.69433 5.95919 6.02223 6.14615 6.41220 6.79984 6.93394 7.48410 7.49602 8.98240 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.033839 B = 0.002725 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.258864 B =10273.654132 C =10695.306368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.271 6.271 3 C -0.078 4.078 4 C 0.046 3.954 5 O -0.152 6.152 6 N -0.600 5.600 7 C 0.721 3.279 8 O -0.627 6.627 9 N -0.610 5.610 10 C 0.141 3.859 11 C -0.113 4.113 12 C 0.043 3.957 13 C -0.529 4.529 14 H 0.053 0.947 15 C 0.012 3.988 16 N -0.915 5.915 17 Si 0.948 3.052 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.281 1.281 21 C -0.117 4.117 22 C 0.114 3.886 23 H 0.118 0.882 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.421 0.579 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.022 0.978 34 H 0.075 0.925 35 H 0.008 0.992 36 H 0.260 0.740 37 H 0.078 0.922 38 H 0.047 0.953 39 H 0.084 0.916 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.822 -16.705 5.587 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.047 6.047 3 C -0.228 4.228 4 C -0.032 4.032 5 O -0.156 6.156 6 N -0.309 5.309 7 C 0.423 3.577 8 O -0.507 6.507 9 N -0.349 5.349 10 C 0.018 3.982 11 C -0.152 4.152 12 C 0.025 3.975 13 C -0.567 4.567 14 H 0.071 0.929 15 C -0.186 4.186 16 N -0.555 5.555 17 Si 0.775 3.225 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.207 1.207 21 C -0.155 4.155 22 C -0.008 4.008 23 H 0.137 0.863 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.267 0.733 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.041 0.959 34 H 0.094 0.906 35 H 0.026 0.974 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.102 0.898 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.822 -16.624 5.667 23.639 hybrid contribution 0.176 1.047 -0.909 1.397 sum -15.645 -15.578 4.757 22.585 Atomic orbital electron populations 1.23515 0.90411 1.07963 1.06204 1.86895 1.11342 1.08218 1.98246 1.23045 0.96644 0.95997 1.07064 1.22739 0.95122 0.81504 1.03790 1.90523 1.01930 1.25498 1.97698 1.46041 0.95962 1.06441 1.82475 1.15375 0.82680 0.81631 0.78052 1.90857 1.55171 1.45067 1.59642 1.47307 1.02610 1.09025 1.76005 1.21525 0.97191 0.80449 0.99012 1.21827 0.95831 1.03422 0.94074 1.18634 0.92231 0.91137 0.95513 1.21611 1.26055 0.98497 1.10562 0.92862 1.25691 0.98168 0.95905 0.98855 1.69971 1.43425 1.03901 1.38167 0.85652 0.78823 0.77964 0.80056 1.19192 1.21226 1.20732 1.21879 0.98342 0.98774 0.96487 1.21932 0.90722 0.88394 0.99726 0.86334 0.89276 0.89411 0.88429 0.88679 0.90106 0.89721 0.73331 0.91383 0.91396 0.95911 0.90622 0.97402 0.93096 0.90383 0.93408 0.89766 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.76 113.37 1.22 0.31 16 2 S -0.27 -3.88 22.38 -56.49 -1.26 -5.14 16 3 C -0.08 -1.20 6.31 71.98 0.45 -0.75 16 4 C 0.05 0.82 6.24 71.98 0.45 1.27 16 5 O -0.15 -4.19 11.11 -21.50 -0.24 -4.43 16 6 N -0.60 -16.70 6.30 -184.75 -1.16 -17.86 16 7 C 0.72 26.45 8.44 179.05 1.51 27.97 16 8 O -0.63 -28.73 16.19 13.32 0.22 -28.52 16 9 N -0.61 -21.30 2.97 -836.92 -2.49 -23.79 16 10 C 0.14 5.65 6.41 86.37 0.55 6.21 16 11 C -0.11 -5.25 5.16 30.69 0.16 -5.09 16 12 C 0.04 2.01 2.06 -11.50 -0.02 1.99 16 13 C -0.53 -27.77 8.56 25.60 0.22 -27.55 16 14 H 0.05 2.75 7.74 -2.91 -0.02 2.72 16 15 C 0.01 0.67 5.30 84.66 0.45 1.12 16 16 N -0.91 -51.32 11.30 21.45 0.24 -51.08 16 17 Si 0.95 42.76 29.54 68.60 2.03 44.78 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 21 C -0.12 -4.12 5.30 30.67 0.16 -3.95 16 22 C 0.11 3.18 6.43 86.36 0.56 3.74 16 23 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.42 8.34 6.00 -92.71 -0.56 7.78 16 31 H 0.07 2.87 7.03 -2.39 -0.02 2.85 16 32 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.08 4.00 6.03 -2.39 -0.01 3.98 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.38 16 36 H 0.26 13.96 8.31 -92.70 -0.77 13.19 16 37 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.10 1.91 5.56 -2.39 -0.01 1.90 16 Total: -1.00 -69.15 338.62 3.51 -65.64 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.47 Total: 15.15 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 5.71 Total: 5.25 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -3.41 Total: -92.73 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.02 Total: -32.95 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -3.88 SS G_CDS: -1.26 Total: -5.14 kcal Total: -69.15 3.51 -65.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793248564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.643 kcal (2) G-P(sol) polarization free energy of solvation -69.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds