Wall clock time and date at job start Tue Mar 31 2020 07:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00199 * 2 1 4 4 H 1.48503 * 109.46981 * 274.99646 * 3 2 1 5 5 H 1.48496 * 109.47209 * 34.99203 * 3 2 1 6 6 H 1.48500 * 109.47163 * 154.99927 * 3 2 1 7 7 C 1.38811 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 174.69975 * 7 2 1 9 9 N 1.36939 * 119.99959 * 354.69901 * 7 2 1 10 10 C 1.47580 * 134.49056 * 184.78155 * 9 7 2 11 11 C 1.53950 * 86.11433 * 155.35550 * 10 9 7 12 12 N 1.46502 * 113.74074 * 137.95173 * 11 10 9 13 13 C 1.34773 * 119.99929 * 156.92509 * 12 11 10 14 14 O 1.21279 * 120.00587 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99879 * 180.02562 * 13 12 11 16 16 H 1.09003 * 110.01874 * 333.94741 * 15 13 12 17 17 C 1.54757 * 110.01352 * 212.56854 * 15 13 12 18 18 C 1.54888 * 103.96135 * 217.12477 * 17 15 13 19 19 C 1.54886 * 102.91728 * 37.92225 * 18 17 15 20 20 C 1.53874 * 110.03424 * 95.34161 * 15 13 12 21 21 H 1.08997 * 110.03148 * 238.56657 * 20 15 13 22 22 C 1.52995 * 110.03301 * 0.02562 * 20 15 13 23 23 F 1.39898 * 109.47397 * 171.62333 * 22 20 15 24 24 F 1.39901 * 109.47095 * 291.62116 * 22 20 15 25 25 C 1.47814 * 134.45395 * 4.64381 * 9 7 2 26 26 H 0.97006 * 119.99706 * 0.02562 * 1 2 3 27 27 H 1.08998 * 113.77041 * 41.05919 * 10 9 7 28 28 H 1.08995 * 113.77307 * 269.65345 * 10 9 7 29 29 H 1.09000 * 113.74292 * 269.15206 * 11 10 9 30 30 H 0.97004 * 120.00258 * 336.92447 * 12 11 10 31 31 H 1.08998 * 110.69831 * 98.47456 * 17 15 13 32 32 H 1.09003 * 110.50192 * 335.67641 * 17 15 13 33 33 H 1.09005 * 110.75931 * 279.51186 * 18 17 15 34 34 H 1.09000 * 110.75664 * 156.32700 * 18 17 15 35 35 H 1.08993 * 110.48930 * 80.64263 * 19 18 17 36 36 H 1.09002 * 110.48613 * 203.28887 * 19 18 17 37 37 H 1.09000 * 109.47170 * 51.62297 * 22 20 15 38 38 H 1.08997 * 113.76759 * 90.38693 * 25 9 7 39 39 H 1.08997 * 113.83884 * 318.91544 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5045 2.6199 0.8029 6 1 3.5966 1.4119 0.5917 7 6 2.0102 -1.2022 0.0005 8 1 3.0867 -1.2042 -0.0859 9 7 1.3299 -2.3855 0.1106 10 6 1.7297 -3.8008 0.2329 11 6 0.3626 -4.0201 0.9059 12 7 -0.3177 -5.2438 0.4746 13 6 -1.2496 -5.8114 1.2657 14 8 -1.5248 -5.3094 2.3349 15 6 -1.9489 -7.0705 0.8223 16 1 -1.9530 -7.1316 -0.2660 17 6 -3.4000 -7.0877 1.3597 18 6 -3.6497 -8.5747 1.7141 19 6 -2.2862 -9.0261 2.2938 20 6 -1.2438 -8.3023 1.4167 21 1 -0.9065 -8.9616 0.6169 22 6 -0.0539 -7.8631 2.2723 23 9 0.4609 -8.9687 2.9577 24 9 0.9385 -7.3219 1.4481 25 6 -0.1001 -2.7570 0.1571 26 1 -0.4850 0.8401 -0.0004 27 1 2.5778 -3.9618 0.8984 28 1 1.8352 -4.3118 -0.7240 29 1 0.3834 -3.9049 1.9896 30 1 -0.0974 -5.6456 -0.3804 31 1 -4.0991 -6.7559 0.5921 32 1 -3.4850 -6.4640 2.2496 33 1 -3.8987 -9.1481 0.8211 34 1 -4.4370 -8.6666 2.4622 35 1 -2.1920 -8.7144 3.3340 36 1 -2.1737 -10.1068 2.2068 37 1 -0.3806 -7.1105 2.9899 38 1 -0.5331 -2.9608 -0.8221 39 1 -0.7100 -2.0863 0.7622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030441721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:12 Heat of formation + Delta-G solvation = -92.295642 kcal Electronic energy + Delta-G solvation = -23917.652809 eV Core-core repulsion = 20111.295220 eV Total energy + Delta-G solvation = -3806.357589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.97200 -46.96267 -40.25639 -38.17574 -36.84971 -33.54628 -31.85621 -30.58141 -29.51780 -27.33656 -24.87361 -24.81050 -23.41988 -21.59165 -21.05962 -19.79782 -19.23274 -17.98771 -17.22298 -17.04541 -16.80523 -16.24067 -15.53482 -15.30357 -14.92096 -14.50469 -14.15770 -13.85501 -13.82880 -13.60418 -13.28245 -13.22067 -12.71469 -12.33968 -11.98876 -11.76296 -11.60556 -11.44664 -11.39071 -11.33347 -11.28279 -10.93042 -10.87599 -10.76556 -10.70292 -10.40723 -10.04488 -9.59683 -9.48253 -8.76794 -8.43781 -6.92356 -5.78284 -3.11636 2.71247 3.33195 3.40227 3.44769 3.47014 3.68274 3.98714 4.09970 4.24770 4.45641 4.75305 4.77456 4.84124 4.96943 5.15368 5.16233 5.21190 5.25790 5.29839 5.41682 5.47984 5.57473 5.61678 5.75623 5.82404 5.90215 6.02006 6.15019 6.23603 6.42469 6.57513 6.73780 7.23095 7.36310 7.54852 7.84012 7.96349 8.45444 9.02290 9.68889 10.55785 11.38562 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.031469 B = 0.003884 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.559145 B = 7206.735230 C = 7787.661181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.226 4.226 8 H 0.081 0.919 9 N -0.607 5.607 10 C 0.115 3.885 11 C 0.093 3.907 12 N -0.702 5.702 13 C 0.508 3.492 14 O -0.544 6.544 15 C -0.109 4.109 16 H 0.100 0.900 17 C -0.113 4.113 18 C -0.121 4.121 19 C -0.114 4.114 20 C -0.126 4.126 21 H 0.102 0.898 22 C 0.250 3.750 23 F -0.207 7.207 24 F -0.196 7.196 25 C 0.153 3.847 26 H 0.254 0.746 27 H 0.050 0.950 28 H 0.035 0.965 29 H 0.109 0.891 30 H 0.398 0.602 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.027 0.973 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 -20.230 1.620 21.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.353 4.353 8 H 0.099 0.901 9 N -0.334 5.334 10 C -0.012 4.012 11 C -0.012 4.012 12 N -0.350 5.350 13 C 0.293 3.707 14 O -0.422 6.422 15 C -0.130 4.130 16 H 0.118 0.882 17 C -0.151 4.151 18 C -0.159 4.159 19 C -0.152 4.152 20 C -0.146 4.146 21 H 0.121 0.879 22 C 0.197 3.803 23 F -0.189 7.189 24 F -0.177 7.177 25 C 0.026 3.974 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.127 0.873 30 H 0.232 0.768 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.138 0.862 38 H 0.045 0.955 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.273 -19.489 2.366 20.610 hybrid contribution 0.807 0.697 -0.782 1.322 sum -5.467 -18.792 1.584 19.635 Atomic orbital electron populations 1.69836 1.05083 1.25446 1.56121 1.24819 0.95662 0.97622 1.02094 0.86089 0.78734 0.83379 0.77472 1.21649 1.21520 1.20467 1.18996 0.90595 0.81713 1.44020 0.90085 1.45747 1.02368 0.99598 1.85692 1.22843 0.94769 0.86930 0.96674 1.23867 0.93487 0.83128 1.00681 1.46191 1.39422 1.27685 1.21749 1.20405 0.80102 0.85211 0.85000 1.90698 1.64477 1.64235 1.22824 1.22068 0.96809 0.91974 1.02196 0.88220 1.22489 0.92779 0.97278 1.02558 1.22476 0.96703 0.95768 1.00916 1.22344 0.93519 1.00015 0.99304 1.22775 0.94902 0.97526 0.99370 0.87947 1.22372 0.84071 0.84815 0.89069 1.92958 1.88753 1.56455 1.80700 1.93027 1.64612 1.86130 1.73960 1.22748 0.88286 0.90149 0.96196 0.93559 0.93226 0.94713 0.87314 0.76838 0.90716 0.89132 0.91158 0.90753 0.90551 0.90504 0.86204 0.95532 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.60 11.36 55.49 0.63 -26.97 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 22.29 29.56 -169.99 -5.02 17.26 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.23 -6.41 10.70 -15.06 -0.16 -6.57 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.61 -15.75 3.70 -177.89 -0.66 -16.41 16 10 C 0.11 2.34 8.69 -2.96 -0.03 2.32 16 11 C 0.09 1.82 4.40 -70.14 -0.31 1.51 16 12 N -0.70 -10.66 4.15 -55.34 -0.23 -10.89 16 13 C 0.51 7.43 4.51 -10.99 -0.05 7.38 16 14 O -0.54 -9.89 14.25 5.56 0.08 -9.81 16 15 C -0.11 -1.11 3.29 -90.39 -0.30 -1.41 16 16 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 17 C -0.11 -1.08 6.35 -24.81 -0.16 -1.23 16 18 C -0.12 -0.87 6.89 -24.74 -0.17 -1.04 16 19 C -0.11 -0.91 6.00 -25.07 -0.15 -1.06 16 20 C -0.13 -1.18 3.08 -89.50 -0.28 -1.45 16 21 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 22 C 0.25 3.02 3.88 37.15 0.14 3.17 16 23 F -0.21 -2.59 16.94 2.25 0.04 -2.55 16 24 F -0.20 -2.71 15.19 2.25 0.03 -2.67 16 25 C 0.15 3.66 7.39 -2.84 -0.02 3.64 16 26 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.04 0.66 8.11 -51.93 -0.42 0.24 16 29 H 0.11 2.32 7.51 -51.93 -0.39 1.93 16 30 H 0.40 5.05 8.71 -40.82 -0.36 4.69 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.09 1.06 6.93 -51.93 -0.36 0.70 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.66 7.85 -51.93 -0.41 0.25 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.12 1.60 6.26 -51.93 -0.32 1.28 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 2.13 7.08 -51.93 -0.37 1.77 16 LS Contribution 320.86 15.07 4.84 4.84 Total: -1.00 -32.67 320.86 -7.42 -40.09 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.55 Total: 2.10 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -1.57 Total: 5.02 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.26 Total: -54.27 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.07 Total: -5.23 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.67 -7.42 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030441721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.203 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds