Wall clock time and date at job start Tue Mar 31 2020 07:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00199 * 2 1 4 4 H 1.48503 * 109.46981 * 274.99646 * 3 2 1 5 5 H 1.48496 * 109.47209 * 34.99203 * 3 2 1 6 6 H 1.48500 * 109.47163 * 154.99927 * 3 2 1 7 7 C 1.38811 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 174.69975 * 7 2 1 9 9 N 1.36939 * 119.99959 * 354.69901 * 7 2 1 10 10 C 1.47580 * 134.49056 * 184.78155 * 9 7 2 11 11 C 1.53950 * 86.11433 * 155.35550 * 10 9 7 12 12 N 1.46502 * 113.74074 * 137.95173 * 11 10 9 13 13 C 1.34773 * 119.99929 * 156.92509 * 12 11 10 14 14 O 1.21279 * 120.00587 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99879 * 180.02562 * 13 12 11 16 16 H 1.09003 * 110.01874 * 333.94741 * 15 13 12 17 17 C 1.54757 * 110.01352 * 212.56854 * 15 13 12 18 18 C 1.54888 * 103.96135 * 217.12477 * 17 15 13 19 19 C 1.54886 * 102.91728 * 37.92225 * 18 17 15 20 20 C 1.53874 * 110.03424 * 95.34161 * 15 13 12 21 21 H 1.08997 * 110.03148 * 238.56657 * 20 15 13 22 22 C 1.52995 * 110.03301 * 0.02562 * 20 15 13 23 23 F 1.39898 * 109.47397 * 171.62333 * 22 20 15 24 24 F 1.39901 * 109.47095 * 291.62116 * 22 20 15 25 25 C 1.47814 * 134.45395 * 4.64381 * 9 7 2 26 26 H 0.97006 * 119.99706 * 0.02562 * 1 2 3 27 27 H 1.08998 * 113.77041 * 41.05919 * 10 9 7 28 28 H 1.08995 * 113.77307 * 269.65345 * 10 9 7 29 29 H 1.09000 * 113.74292 * 269.15206 * 11 10 9 30 30 H 0.97004 * 120.00258 * 336.92447 * 12 11 10 31 31 H 1.08998 * 110.69831 * 98.47456 * 17 15 13 32 32 H 1.09003 * 110.50192 * 335.67641 * 17 15 13 33 33 H 1.09005 * 110.75931 * 279.51186 * 18 17 15 34 34 H 1.09000 * 110.75664 * 156.32700 * 18 17 15 35 35 H 1.08993 * 110.48930 * 80.64263 * 19 18 17 36 36 H 1.09002 * 110.48613 * 203.28887 * 19 18 17 37 37 H 1.09000 * 109.47170 * 51.62297 * 22 20 15 38 38 H 1.08997 * 113.76759 * 90.38693 * 25 9 7 39 39 H 1.08997 * 113.83884 * 318.91544 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5045 2.6199 0.8029 6 1 3.5966 1.4119 0.5917 7 6 2.0102 -1.2022 0.0005 8 1 3.0867 -1.2042 -0.0859 9 7 1.3299 -2.3855 0.1106 10 6 1.7297 -3.8008 0.2329 11 6 0.3626 -4.0201 0.9059 12 7 -0.3177 -5.2438 0.4746 13 6 -1.2496 -5.8114 1.2657 14 8 -1.5248 -5.3094 2.3349 15 6 -1.9489 -7.0705 0.8223 16 1 -1.9530 -7.1316 -0.2660 17 6 -3.4000 -7.0877 1.3597 18 6 -3.6497 -8.5747 1.7141 19 6 -2.2862 -9.0261 2.2938 20 6 -1.2438 -8.3023 1.4167 21 1 -0.9065 -8.9616 0.6169 22 6 -0.0539 -7.8631 2.2723 23 9 0.4609 -8.9687 2.9577 24 9 0.9385 -7.3219 1.4481 25 6 -0.1001 -2.7570 0.1571 26 1 -0.4850 0.8401 -0.0004 27 1 2.5778 -3.9618 0.8984 28 1 1.8352 -4.3118 -0.7240 29 1 0.3834 -3.9049 1.9896 30 1 -0.0974 -5.6456 -0.3804 31 1 -4.0991 -6.7559 0.5921 32 1 -3.4850 -6.4640 2.2496 33 1 -3.8987 -9.1481 0.8211 34 1 -4.4370 -8.6666 2.4622 35 1 -2.1920 -8.7144 3.3340 36 1 -2.1737 -10.1068 2.2068 37 1 -0.3806 -7.1105 2.9899 38 1 -0.5331 -2.9608 -0.8221 39 1 -0.7100 -2.0863 0.7622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030441721.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:12 Heat of formation + Delta-G solvation = -113.546915 kcal Electronic energy + Delta-G solvation = -23918.574333 eV Core-core repulsion = 20111.295220 eV Total energy + Delta-G solvation = -3807.279114 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.96727 -47.96867 -41.42664 -39.68101 -37.98942 -35.15016 -33.77438 -31.36974 -30.48287 -29.17172 -26.63390 -25.83942 -25.06717 -22.86840 -21.71613 -21.36560 -20.45383 -18.94557 -18.80593 -18.31100 -18.02719 -17.52847 -16.96662 -16.54558 -16.29697 -15.75528 -15.46923 -15.36605 -14.88923 -14.62292 -14.54578 -14.29418 -14.08407 -13.80706 -13.34144 -13.22438 -13.09704 -12.87669 -12.67903 -12.57176 -12.34841 -12.19975 -12.03909 -11.96460 -11.93940 -11.63297 -11.52943 -11.50212 -10.86281 -10.75884 -9.93070 -8.99131 -7.94271 -5.29150 1.44433 1.47094 1.53519 1.56494 2.13818 2.48080 2.75042 3.20547 3.22206 3.25792 3.37427 3.40909 3.80104 3.83928 3.90088 4.07220 4.23648 4.33859 4.42205 4.47081 4.50052 4.52590 4.56521 4.72839 4.76715 4.88228 5.02930 5.13884 5.15832 5.21807 5.23414 5.25266 5.46363 5.48727 5.69809 5.88050 6.60477 6.86575 7.26319 7.56222 8.49614 9.22672 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.031469 B = 0.003884 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.559145 B = 7206.735230 C = 7787.661181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.066 4.066 3 Si 0.982 3.018 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.238 4.238 8 H 0.088 0.912 9 N -0.639 5.639 10 C 0.123 3.877 11 C 0.124 3.876 12 N -0.694 5.694 13 C 0.505 3.495 14 O -0.583 6.583 15 C -0.101 4.101 16 H 0.132 0.868 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.117 4.117 21 H 0.130 0.870 22 C 0.246 3.754 23 F -0.210 7.210 24 F -0.207 7.207 25 C 0.152 3.848 26 H 0.249 0.751 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.414 0.586 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.027 0.973 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 -22.528 0.428 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.259 4.259 3 Si 0.810 3.190 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.366 4.366 8 H 0.106 0.894 9 N -0.366 5.366 10 C -0.003 4.003 11 C 0.017 3.983 12 N -0.344 5.344 13 C 0.293 3.707 14 O -0.464 6.464 15 C -0.122 4.122 16 H 0.150 0.850 17 C -0.155 4.155 18 C -0.148 4.148 19 C -0.152 4.152 20 C -0.137 4.137 21 H 0.148 0.852 22 C 0.193 3.807 23 F -0.191 7.191 24 F -0.188 7.188 25 C 0.025 3.975 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.251 0.749 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.045 0.955 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.040 -21.852 1.156 22.701 hybrid contribution 0.735 1.354 -0.362 1.583 sum -5.305 -20.497 0.794 21.188 Atomic orbital electron populations 1.70040 1.06674 1.25749 1.57782 1.25708 0.96532 1.01135 1.02525 0.85014 0.77830 0.78779 0.77404 1.21111 1.22112 1.18998 1.19437 0.91278 0.83051 1.42871 0.89386 1.46084 1.03383 1.01174 1.85960 1.22971 0.95180 0.84092 0.98024 1.23048 0.93055 0.83395 0.98800 1.45970 1.39470 1.26273 1.22722 1.21266 0.79239 0.86146 0.84092 1.90691 1.65404 1.65638 1.24663 1.22172 0.96528 0.89428 1.04097 0.85032 1.22516 0.92542 0.98769 1.01662 1.22461 0.96376 0.93877 1.02067 1.22401 0.93459 1.01062 0.98324 1.22836 0.93696 0.97341 0.99783 0.85169 1.22463 0.84713 0.84382 0.89163 1.92950 1.88896 1.56350 1.80915 1.93000 1.65283 1.86404 1.74110 1.22625 0.87319 0.91552 0.95969 0.94209 0.92337 0.91779 0.89463 0.74876 0.89507 0.92139 0.88770 0.90083 0.91945 0.88435 0.88357 0.95524 0.94726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.19 11.36 21.65 0.25 -58.94 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 3 Si 0.98 46.40 29.56 68.60 2.03 48.42 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.24 -13.62 10.70 84.03 0.90 -12.72 16 8 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 9 N -0.64 -33.46 3.70 -716.71 -2.65 -36.11 16 10 C 0.12 4.89 8.69 86.49 0.75 5.64 16 11 C 0.12 4.87 4.40 46.75 0.21 5.08 16 12 N -0.69 -20.39 4.15 -447.38 -1.86 -22.25 16 13 C 0.50 14.47 4.51 87.66 0.39 14.87 16 14 O -0.58 -21.85 14.25 -3.03 -0.04 -21.89 16 15 C -0.10 -1.81 3.29 -10.64 -0.04 -1.85 16 16 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 17 C -0.12 -2.00 6.35 31.84 0.20 -1.79 16 18 C -0.11 -1.23 6.89 31.88 0.22 -1.01 16 19 C -0.11 -1.50 6.00 31.67 0.19 -1.31 16 20 C -0.12 -1.85 3.08 -10.07 -0.03 -1.88 16 21 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 22 C 0.25 5.66 3.88 71.98 0.28 5.94 16 23 F -0.21 -4.97 16.94 44.97 0.76 -4.21 16 24 F -0.21 -5.39 15.19 44.97 0.68 -4.71 16 25 C 0.15 7.51 7.39 86.44 0.64 8.15 16 26 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.06 2.24 8.11 -2.39 -0.02 2.22 16 29 H 0.09 3.86 7.51 -2.39 -0.02 3.84 16 30 H 0.41 9.49 8.71 -92.71 -0.81 8.69 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.42 6.93 -2.39 -0.02 1.40 16 33 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 1.00 7.85 -2.39 -0.02 0.98 16 36 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.10 2.68 6.26 -2.39 -0.01 2.67 16 38 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.03 1.99 7.08 -2.39 -0.02 1.98 16 Total: -1.00 -73.55 320.86 3.61 -69.95 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.26 Total: 13.99 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 4.18 Total: 15.75 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -4.27 Total: -117.30 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -0.04 Total: -21.89 kcal Atomic # 9 Polarization: -10.36 SS G_CDS: 1.44 Total: -8.91 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -73.55 3.61 -69.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030441721.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.601 kcal (2) G-P(sol) polarization free energy of solvation -73.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds