Wall clock time and date at job start Tue Mar 31 2020 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99833 * 2 1 4 4 H 1.48502 * 109.47176 * 269.99797 * 3 2 1 5 5 H 1.48506 * 109.46954 * 29.99813 * 3 2 1 6 6 H 1.48502 * 109.46788 * 149.99835 * 3 2 1 7 7 C 1.38807 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00366 * 197.11630 * 7 2 1 9 9 N 1.36942 * 120.00180 * 16.84789 * 7 2 1 10 10 C 1.46928 * 120.67512 * 207.37492 * 9 7 2 11 11 C 1.52759 * 109.07977 * 234.05146 * 10 9 7 12 12 C 1.53119 * 109.36403 * 305.07921 * 11 10 9 13 13 C 1.52481 * 109.65229 * 60.36940 * 12 11 10 14 14 C 1.53848 * 110.21392 * 178.08746 * 13 12 11 15 15 C 1.54503 * 104.79043 * 240.96273 * 14 13 12 16 16 N 1.48186 * 104.63672 * 23.80000 * 15 14 13 17 17 C 1.34776 * 127.80608 * 140.72190 * 16 15 14 18 18 O 1.21278 * 120.00019 * 179.97438 * 17 16 15 19 19 C 1.50694 * 119.99772 * 359.97438 * 17 16 15 20 20 F 1.39901 * 109.47440 * 54.99947 * 19 17 16 21 21 F 1.39899 * 109.47167 * 174.99862 * 19 17 16 22 22 C 1.48259 * 104.39100 * 320.69736 * 16 15 14 23 23 C 1.47023 * 120.67532 * 27.65178 * 9 7 2 24 24 H 0.96996 * 120.00432 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.57411 * 353.90345 * 10 9 7 26 26 H 1.08998 * 109.57676 * 114.28975 * 10 9 7 27 27 H 1.08999 * 109.56491 * 185.05383 * 11 10 9 28 28 H 1.08998 * 109.36382 * 64.99065 * 11 10 9 29 29 H 1.09001 * 109.44169 * 300.31187 * 12 11 10 30 30 H 1.08998 * 109.43568 * 180.42151 * 12 11 10 31 31 H 1.08994 * 110.37119 * 359.78714 * 14 13 12 32 32 H 1.08993 * 110.37402 * 122.02288 * 14 13 12 33 33 H 1.09008 * 110.40254 * 142.58550 * 15 14 13 34 34 H 1.09002 * 110.40598 * 264.88651 * 15 14 13 35 35 H 1.09002 * 109.47185 * 294.99973 * 19 17 16 36 36 H 1.09001 * 110.42885 * 280.39469 * 22 16 15 37 37 H 1.09002 * 110.42515 * 157.91605 * 22 16 15 38 38 H 1.09002 * 109.57285 * 247.05972 * 23 9 7 39 39 H 1.09002 * 109.57179 * 7.43269 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0544 -1.2228 0.2758 9 7 1.3697 -2.3628 -0.3427 10 6 1.8242 -3.6551 0.1885 11 6 2.0781 -4.6118 -0.9750 12 6 0.8172 -4.7068 -1.8386 13 6 0.4692 -3.3290 -2.3913 14 6 -0.7690 -3.4180 -3.3001 15 6 -0.2759 -2.9456 -4.6860 16 7 1.1854 -3.1914 -4.6673 17 6 1.9587 -3.6513 -5.6707 18 8 3.1499 -3.8003 -5.4989 19 6 1.3430 -3.9804 -7.0062 20 9 0.6473 -2.8657 -7.4865 21 9 2.3515 -4.3264 -7.9121 22 6 1.6046 -2.8166 -3.2955 23 6 0.2169 -2.3418 -1.2549 24 1 -0.4850 0.8400 -0.0004 25 1 2.7467 -3.5143 0.7517 26 1 1.0565 -4.0725 0.8400 27 1 2.3290 -5.5992 -0.5876 28 1 2.9047 -4.2361 -1.5780 29 1 -0.0108 -5.0744 -1.2324 30 1 0.9947 -5.3950 -2.6650 31 1 -1.1263 -4.4463 -3.3548 32 1 -1.5578 -2.7620 -2.9321 33 1 -0.7491 -3.5280 -5.4766 34 1 -0.4828 -1.8840 -4.8214 35 1 0.6541 -4.8174 -6.8924 36 1 1.7004 -1.7342 -3.2093 37 1 2.5449 -3.3043 -3.0384 38 1 -0.6832 -2.6313 -0.7127 39 1 0.0926 -1.3388 -1.6633 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040034521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:38 Heat of formation + Delta-G solvation = -108.838803 kcal Electronic energy + Delta-G solvation = -24499.851559 eV Core-core repulsion = 20692.776605 eV Total energy + Delta-G solvation = -3807.074954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.28167 -47.30836 -40.20342 -38.37671 -35.94395 -33.16649 -31.75809 -30.07733 -29.05774 -28.50159 -25.39066 -25.19776 -23.27738 -22.25561 -20.52098 -20.09152 -18.22899 -18.21689 -17.78381 -17.13613 -16.81360 -15.89543 -15.48882 -14.79337 -14.25351 -14.16896 -14.10573 -14.02827 -13.76402 -13.62651 -13.26106 -13.08273 -12.84570 -12.57181 -12.52765 -12.15017 -11.95658 -11.64322 -11.14806 -11.06509 -10.94591 -10.75727 -10.46212 -10.36958 -10.19081 -9.91209 -9.83478 -9.57060 -9.48869 -8.70946 -8.52747 -6.73596 -5.85322 -3.26544 2.17416 2.52882 3.35203 3.42978 3.44063 3.61798 3.86495 4.39159 4.45125 4.52506 4.76598 4.89787 5.06789 5.32529 5.40275 5.44482 5.54510 5.59019 5.68699 5.93851 6.00180 6.02235 6.05082 6.18552 6.23640 6.32542 6.42603 6.59549 6.65582 6.75589 6.83533 6.96682 7.20366 7.42226 7.51547 7.75537 7.81376 8.37976 9.15366 9.78209 10.34859 11.23491 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.018374 B = 0.005423 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.562010 B = 5162.166488 C = 5665.578689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.004 3.996 3 Si 0.899 3.101 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.140 4.140 12 C -0.092 4.092 13 C -0.095 4.095 14 C -0.124 4.124 15 C 0.097 3.903 16 N -0.607 5.607 17 C 0.487 3.513 18 O -0.511 6.511 19 C 0.260 3.740 20 F -0.188 7.188 21 F -0.179 7.179 22 C 0.126 3.874 23 C 0.188 3.812 24 H 0.254 0.746 25 H 0.053 0.947 26 H 0.017 0.983 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.133 0.867 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.024 0.976 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.785 -9.249 -10.280 14.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.018 3.982 11 C -0.179 4.179 12 C -0.130 4.130 13 C -0.097 4.097 14 C -0.163 4.163 15 C -0.025 4.025 16 N -0.340 5.340 17 C 0.271 3.729 18 O -0.386 6.386 19 C 0.203 3.797 20 F -0.169 7.169 21 F -0.160 7.160 22 C 0.006 3.994 23 C 0.061 3.939 24 H 0.064 0.936 25 H 0.071 0.929 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.150 0.850 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.042 0.958 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.155 -9.182 -10.256 14.122 hybrid contribution 0.318 0.933 -0.171 1.001 sum -2.836 -8.248 -10.427 13.594 Atomic orbital electron populations 1.70009 1.05164 1.25531 1.54141 1.24994 0.95278 0.98293 1.00918 0.86332 0.79226 0.83742 0.77775 1.21428 1.21746 1.20402 1.19206 0.92665 0.84642 1.41454 0.91586 1.44053 1.35065 1.01514 1.50745 1.20826 0.97563 0.86862 0.92917 1.22046 0.97576 0.99142 0.99113 1.21342 0.98164 0.95278 0.98225 1.21895 0.92994 0.97976 0.96885 1.22571 0.98601 1.01776 0.93373 1.22609 0.79287 1.01862 0.98765 1.49188 1.09791 1.61830 1.13218 1.20491 0.87241 0.79841 0.85373 1.90810 1.13979 1.52223 1.81594 1.21590 0.84790 0.88039 0.85258 1.93048 1.79129 1.55355 1.89419 1.93044 1.62561 1.92115 1.68251 1.22624 0.99018 1.01028 0.76762 1.20799 0.88918 0.97079 0.87079 0.93611 0.92860 0.96477 0.93034 0.92120 0.92327 0.93756 0.91263 0.89483 0.90862 0.89978 0.85021 0.89777 0.89565 0.95765 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.81 11.17 55.49 0.62 -24.19 16 2 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.25 -6.54 9.59 -15.06 -0.14 -6.68 16 8 H 0.07 1.73 7.88 -52.48 -0.41 1.32 16 9 N -0.59 -13.80 2.83 -172.85 -0.49 -14.29 16 10 C 0.14 2.89 6.47 -3.93 -0.03 2.87 16 11 C -0.14 -2.36 5.86 -26.79 -0.16 -2.51 16 12 C -0.09 -1.44 4.48 -26.94 -0.12 -1.56 16 13 C -0.09 -1.57 0.68 -154.04 -0.11 -1.67 16 14 C -0.12 -1.60 6.29 -25.50 -0.16 -1.76 16 15 C 0.10 1.15 6.41 -2.33 -0.01 1.14 16 16 N -0.61 -9.03 3.32 -169.39 -0.56 -9.59 16 17 C 0.49 7.50 7.74 -10.99 -0.09 7.41 16 18 O -0.51 -9.94 16.89 5.56 0.09 -9.85 16 19 C 0.26 2.99 4.87 36.00 0.18 3.16 16 20 F -0.19 -2.24 16.41 2.25 0.04 -2.20 16 21 F -0.18 -2.41 16.95 2.25 0.04 -2.37 16 22 C 0.13 2.22 5.79 -2.59 -0.02 2.21 16 23 C 0.19 3.98 3.66 -3.95 -0.01 3.97 16 24 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 25 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 1.10 6.21 -51.93 -0.32 0.77 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.77 7.70 -51.93 -0.40 0.37 16 32 H 0.09 1.13 7.69 -51.93 -0.40 0.73 16 33 H 0.07 0.64 7.21 -51.92 -0.37 0.26 16 34 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.13 0.92 8.13 -51.93 -0.42 0.50 16 36 H 0.08 1.68 7.73 -51.93 -0.40 1.28 16 37 H 0.09 1.67 5.63 -51.93 -0.29 1.37 16 38 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 2.19 5.90 -51.93 -0.31 1.88 16 LS Contribution 314.43 15.07 4.74 4.74 Total: -1.00 -30.11 314.43 -6.72 -36.83 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -5.42 Total: -1.83 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -0.75 Total: 6.57 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.43 Total: -48.07 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.08 Total: -4.57 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.11 -6.72 -36.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040034521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.007 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds