Wall clock time and date at job start Tue Mar 31 2020 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99833 * 2 1 4 4 H 1.48502 * 109.47176 * 269.99797 * 3 2 1 5 5 H 1.48506 * 109.46954 * 29.99813 * 3 2 1 6 6 H 1.48502 * 109.46788 * 149.99835 * 3 2 1 7 7 C 1.38807 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00366 * 197.11630 * 7 2 1 9 9 N 1.36942 * 120.00180 * 16.84789 * 7 2 1 10 10 C 1.46928 * 120.67512 * 207.37492 * 9 7 2 11 11 C 1.52759 * 109.07977 * 234.05146 * 10 9 7 12 12 C 1.53119 * 109.36403 * 305.07921 * 11 10 9 13 13 C 1.52481 * 109.65229 * 60.36940 * 12 11 10 14 14 C 1.53848 * 110.21392 * 178.08746 * 13 12 11 15 15 C 1.54503 * 104.79043 * 240.96273 * 14 13 12 16 16 N 1.48186 * 104.63672 * 23.80000 * 15 14 13 17 17 C 1.34776 * 127.80608 * 140.72190 * 16 15 14 18 18 O 1.21278 * 120.00019 * 179.97438 * 17 16 15 19 19 C 1.50694 * 119.99772 * 359.97438 * 17 16 15 20 20 F 1.39901 * 109.47440 * 54.99947 * 19 17 16 21 21 F 1.39899 * 109.47167 * 174.99862 * 19 17 16 22 22 C 1.48259 * 104.39100 * 320.69736 * 16 15 14 23 23 C 1.47023 * 120.67532 * 27.65178 * 9 7 2 24 24 H 0.96996 * 120.00432 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.57411 * 353.90345 * 10 9 7 26 26 H 1.08998 * 109.57676 * 114.28975 * 10 9 7 27 27 H 1.08999 * 109.56491 * 185.05383 * 11 10 9 28 28 H 1.08998 * 109.36382 * 64.99065 * 11 10 9 29 29 H 1.09001 * 109.44169 * 300.31187 * 12 11 10 30 30 H 1.08998 * 109.43568 * 180.42151 * 12 11 10 31 31 H 1.08994 * 110.37119 * 359.78714 * 14 13 12 32 32 H 1.08993 * 110.37402 * 122.02288 * 14 13 12 33 33 H 1.09008 * 110.40254 * 142.58550 * 15 14 13 34 34 H 1.09002 * 110.40598 * 264.88651 * 15 14 13 35 35 H 1.09002 * 109.47185 * 294.99973 * 19 17 16 36 36 H 1.09001 * 110.42885 * 280.39469 * 22 16 15 37 37 H 1.09002 * 110.42515 * 157.91605 * 22 16 15 38 38 H 1.09002 * 109.57285 * 247.05972 * 23 9 7 39 39 H 1.09002 * 109.57179 * 7.43269 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0544 -1.2228 0.2758 9 7 1.3697 -2.3628 -0.3427 10 6 1.8242 -3.6551 0.1885 11 6 2.0781 -4.6118 -0.9750 12 6 0.8172 -4.7068 -1.8386 13 6 0.4692 -3.3290 -2.3913 14 6 -0.7690 -3.4180 -3.3001 15 6 -0.2759 -2.9456 -4.6860 16 7 1.1854 -3.1914 -4.6673 17 6 1.9587 -3.6513 -5.6707 18 8 3.1499 -3.8003 -5.4989 19 6 1.3430 -3.9804 -7.0062 20 9 0.6473 -2.8657 -7.4865 21 9 2.3515 -4.3264 -7.9121 22 6 1.6046 -2.8166 -3.2955 23 6 0.2169 -2.3418 -1.2549 24 1 -0.4850 0.8400 -0.0004 25 1 2.7467 -3.5143 0.7517 26 1 1.0565 -4.0725 0.8400 27 1 2.3290 -5.5992 -0.5876 28 1 2.9047 -4.2361 -1.5780 29 1 -0.0108 -5.0744 -1.2324 30 1 0.9947 -5.3950 -2.6650 31 1 -1.1263 -4.4463 -3.3548 32 1 -1.5578 -2.7620 -2.9321 33 1 -0.7491 -3.5280 -5.4766 34 1 -0.4828 -1.8840 -4.8214 35 1 0.6541 -4.8174 -6.8924 36 1 1.7004 -1.7342 -3.2093 37 1 2.5449 -3.3043 -3.0384 38 1 -0.6832 -2.6313 -0.7127 39 1 0.0926 -1.3388 -1.6633 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040034521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:38 Heat of formation + Delta-G solvation = -127.402213 kcal Electronic energy + Delta-G solvation = -24500.656529 eV Core-core repulsion = 20692.776605 eV Total energy + Delta-G solvation = -3807.879924 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.21175 -48.24814 -41.48805 -39.74803 -37.41379 -34.89727 -33.18312 -31.82685 -30.25281 -29.65743 -27.25744 -26.48527 -24.48916 -23.92410 -21.99285 -21.18765 -19.68777 -19.23654 -18.77028 -18.59659 -18.20443 -17.10112 -16.88110 -16.52401 -15.80947 -15.57469 -15.32392 -15.19203 -15.02939 -14.70232 -14.57150 -14.42533 -14.33419 -14.08212 -13.76981 -13.38556 -13.12558 -13.01130 -12.88761 -12.69898 -12.46242 -12.45685 -12.09804 -11.96572 -11.77640 -11.40417 -11.13303 -11.04811 -10.99823 -10.53484 -9.95914 -8.65024 -7.87768 -5.30150 0.99960 1.41207 1.43360 1.46428 1.53108 2.49550 2.70465 2.94017 3.25997 3.48058 3.59477 3.68797 3.70307 3.87350 3.90881 4.25446 4.28412 4.30354 4.50411 4.52802 4.65666 4.69856 4.78067 4.88404 4.94924 5.06058 5.10470 5.18167 5.21175 5.31358 5.35730 5.50220 5.59296 5.66803 5.77991 6.25696 6.40158 6.62872 7.17073 7.88012 8.38545 9.18112 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.018374 B = 0.005423 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.562010 B = 5162.166488 C = 5665.578689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.040 4.040 3 Si 0.953 3.047 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.258 4.258 8 H 0.058 0.942 9 N -0.610 5.610 10 C 0.141 3.859 11 C -0.131 4.131 12 C -0.087 4.087 13 C -0.087 4.087 14 C -0.118 4.118 15 C 0.097 3.903 16 N -0.603 5.603 17 C 0.479 3.521 18 O -0.563 6.563 19 C 0.272 3.728 20 F -0.189 7.189 21 F -0.191 7.191 22 C 0.133 3.867 23 C 0.198 3.802 24 H 0.250 0.750 25 H 0.045 0.955 26 H 0.019 0.981 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.077 0.923 35 H 0.195 0.805 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.007 0.993 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.081 -11.168 -11.925 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.236 4.236 3 Si 0.782 3.218 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.388 4.388 8 H 0.075 0.925 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.170 4.170 12 C -0.125 4.125 13 C -0.090 4.090 14 C -0.156 4.156 15 C -0.024 4.024 16 N -0.336 5.336 17 C 0.265 3.735 18 O -0.441 6.441 19 C 0.215 3.785 20 F -0.170 7.170 21 F -0.172 7.172 22 C 0.011 3.989 23 C 0.072 3.928 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.139 0.861 34 H 0.096 0.904 35 H 0.212 0.788 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.025 0.975 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.474 -11.118 -11.915 16.899 hybrid contribution 0.762 1.543 0.402 1.768 sum -3.711 -9.575 -11.513 15.427 Atomic orbital electron populations 1.70124 1.06075 1.25692 1.55453 1.25552 0.95967 1.00614 1.01513 0.85488 0.78300 0.80666 0.77363 1.21687 1.21829 1.19927 1.19400 0.92568 0.86134 1.40697 0.92467 1.44307 1.35391 1.01902 1.51673 1.20952 0.97035 0.86206 0.94293 1.21932 0.97927 0.99373 0.97767 1.21326 0.97649 0.94698 0.98784 1.21676 0.94588 0.97171 0.95563 1.22569 0.96508 1.03837 0.92707 1.22830 0.77296 1.02653 0.99659 1.49215 1.11177 1.61166 1.12003 1.21378 0.86719 0.78677 0.86750 1.90787 1.16323 1.54260 1.82758 1.21848 0.84924 0.89484 0.82202 1.93056 1.78819 1.55963 1.89155 1.93025 1.63627 1.92169 1.68411 1.22231 0.98768 0.98616 0.79294 1.20587 0.87580 0.96725 0.87917 0.94026 0.93678 0.96291 0.90191 0.93771 0.91132 0.91448 0.87990 0.89735 0.86088 0.90430 0.78811 0.93402 0.91686 0.97527 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.48 11.17 21.65 0.24 -52.24 16 2 C -0.04 -2.21 4.92 84.86 0.42 -1.79 16 3 Si 0.95 44.80 29.59 68.60 2.03 46.83 16 4 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.26 -13.94 9.59 84.03 0.81 -13.13 16 8 H 0.06 3.12 7.88 -2.91 -0.02 3.10 16 9 N -0.61 -29.24 2.83 -700.76 -1.99 -31.23 16 10 C 0.14 5.65 6.47 86.22 0.56 6.21 16 11 C -0.13 -4.26 5.86 30.55 0.18 -4.09 16 12 C -0.09 -2.50 4.48 30.46 0.14 -2.36 16 13 C -0.09 -2.80 0.68 -51.88 -0.04 -2.84 16 14 C -0.12 -2.67 6.29 31.39 0.20 -2.47 16 15 C 0.10 1.96 6.41 86.57 0.55 2.52 16 16 N -0.60 -16.85 3.32 -808.23 -2.68 -19.54 16 17 C 0.48 13.82 7.74 87.66 0.68 14.50 16 18 O -0.56 -21.81 16.89 -3.02 -0.05 -21.86 16 19 C 0.27 5.17 4.87 71.23 0.35 5.52 16 20 F -0.19 -3.78 16.41 44.97 0.74 -3.05 16 21 F -0.19 -4.66 16.95 44.97 0.76 -3.90 16 22 C 0.13 4.74 5.79 86.35 0.50 5.24 16 23 C 0.20 8.59 3.66 86.16 0.32 8.90 16 24 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 25 H 0.04 1.84 7.93 -2.39 -0.02 1.82 16 26 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.04 1.59 6.21 -2.39 -0.01 1.58 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.10 1.72 7.70 -2.39 -0.02 1.70 16 32 H 0.08 2.01 7.69 -2.39 -0.02 1.99 16 33 H 0.12 1.37 7.21 -2.38 -0.02 1.36 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 35 H 0.20 1.43 8.13 -2.39 -0.02 1.41 16 36 H 0.05 2.03 7.73 -2.39 -0.02 2.01 16 37 H 0.06 2.59 5.63 -2.39 -0.01 2.57 16 38 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.06 2.90 5.90 -2.39 -0.01 2.89 16 Total: -1.00 -69.47 314.43 4.76 -64.71 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 1.06 Total: 4.07 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 4.65 Total: 16.20 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -4.43 Total: -103.01 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 1.50 Total: -6.94 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -69.47 4.76 -64.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040034521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.697 kcal (2) G-P(sol) polarization free energy of solvation -69.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds