Wall clock time and date at job start Tue Mar 31 2020 06:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 120.00055 * 2 1 4 4 H 1.48503 * 109.46978 * 274.14341 * 3 2 1 5 5 H 1.48501 * 109.47309 * 34.13834 * 3 2 1 6 6 H 1.48499 * 109.47521 * 154.14600 * 3 2 1 7 7 C 1.38817 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00084 * 4.66820 * 7 2 1 9 9 N 1.36940 * 119.99736 * 184.66001 * 7 2 1 10 10 C 1.46503 * 119.99539 * 184.98637 * 9 7 2 11 11 C 1.53004 * 109.46887 * 185.15579 * 10 9 7 12 12 C 1.52995 * 115.55096 * 55.99100 * 11 10 9 13 13 C 1.52999 * 109.47010 * 65.25132 * 12 11 10 14 14 N 1.46497 * 109.47426 * 174.91798 * 13 12 11 15 15 C 1.34779 * 120.00367 * 184.93245 * 14 13 12 16 16 O 1.21287 * 119.99874 * 4.81030 * 15 14 13 17 17 C 1.50700 * 120.00272 * 184.80814 * 15 14 13 18 18 H 1.08995 * 115.54615 * 34.32889 * 17 15 14 19 19 C 1.53001 * 117.49990 * 180.02562 * 17 15 14 20 20 C 1.52999 * 60.00173 * 107.48623 * 19 17 15 21 21 F 1.39894 * 117.49951 * 252.51201 * 20 19 17 22 22 F 1.39901 * 117.49606 * 107.49024 * 20 19 17 23 23 C 1.52997 * 117.49714 * 201.66776 * 11 10 9 24 24 C 1.52998 * 117.49581 * 270.32649 * 11 10 9 25 25 H 0.97000 * 120.00101 * 0.02562 * 1 2 3 26 26 H 0.96993 * 120.00196 * 4.98243 * 9 7 2 27 27 H 1.09000 * 109.47300 * 65.15329 * 10 9 7 28 28 H 1.09000 * 109.47131 * 305.15016 * 10 9 7 29 29 H 1.09001 * 109.47487 * 305.25450 * 12 11 10 30 30 H 1.09002 * 109.47459 * 185.25019 * 12 11 10 31 31 H 1.09004 * 109.47161 * 294.91647 * 13 12 11 32 32 H 1.09002 * 109.47363 * 54.91043 * 13 12 11 33 33 H 0.96998 * 120.00156 * 4.92644 * 14 13 12 34 34 H 1.08997 * 117.49419 * 214.98210 * 19 17 15 35 35 H 1.09005 * 117.49465 * 359.97438 * 19 17 15 36 36 H 1.09006 * 117.49376 * 214.99813 * 23 11 10 37 37 H 1.08995 * 117.50224 * 0.02562 * 23 11 10 38 38 H 1.09003 * 117.50471 * 359.97438 * 24 11 10 39 39 H 1.09002 * 117.50169 * 144.99782 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4100 2.0969 -1.3965 5 1 1.4941 2.6258 0.7857 6 1 3.5888 1.4165 0.6105 7 6 2.0103 -1.2022 0.0005 8 1 1.4730 -2.1360 -0.0752 9 7 3.3763 -1.2041 0.0969 10 6 4.1165 -2.4636 -0.0123 11 6 5.6008 -2.2077 0.2565 12 6 5.9239 -1.5431 1.5962 13 6 5.5450 -2.4878 2.7386 14 7 5.9648 -1.9038 4.0148 15 6 5.8236 -2.6063 5.1563 16 8 5.4309 -3.7532 5.1179 17 6 6.1537 -1.9669 6.4804 18 1 5.9342 -0.9019 6.5558 19 6 5.9732 -2.8166 7.7399 20 6 7.3792 -2.4908 7.2319 21 9 8.1074 -3.5267 6.6373 22 9 8.1322 -1.5663 7.9637 23 6 6.6031 -3.2287 -0.2856 24 6 6.4841 -1.8503 -0.9405 25 1 -0.4850 0.8400 -0.0004 26 1 3.8537 -0.3715 0.2373 27 1 3.9939 -2.8713 -1.0157 28 1 3.7324 -3.1753 0.7185 29 1 5.3574 -0.6164 1.6881 30 1 6.9904 -1.3234 1.6450 31 1 4.4651 -2.6359 2.7446 32 1 6.0424 -3.4473 2.5968 33 1 6.3445 -1.0115 4.0384 34 1 5.6349 -2.3107 8.6441 35 1 5.6153 -3.8381 7.6107 36 1 7.4928 -3.4269 0.3123 37 1 6.2052 -4.0824 -0.8341 38 1 6.0079 -1.7978 -1.9196 39 1 7.2954 -1.1417 -0.7737 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164458014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:35 Heat of formation + Delta-G solvation = -68.483431 kcal Electronic energy + Delta-G solvation = -22701.975205 eV Core-core repulsion = 18896.650191 eV Total energy + Delta-G solvation = -3805.325014 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.06053 -47.72977 -40.02753 -38.47896 -36.02797 -34.91497 -34.09846 -31.17100 -30.28693 -26.43156 -25.31846 -22.99973 -22.90061 -22.34239 -21.82154 -20.62546 -19.01376 -18.43725 -17.64904 -17.38756 -16.58760 -16.34141 -15.88786 -15.42759 -15.09194 -14.54971 -14.38304 -14.28764 -14.15077 -13.90054 -13.73083 -13.59249 -13.25791 -12.78084 -12.63468 -12.50105 -12.03303 -11.66306 -11.60739 -11.34531 -11.23384 -10.94783 -10.80367 -10.60272 -10.21770 -10.04985 -9.92212 -9.64303 -9.50468 -9.13603 -8.88426 -7.22300 -5.78286 -3.13177 1.88649 2.59437 2.83685 3.08185 3.31047 3.37410 3.42339 3.79030 3.90403 4.06095 4.17839 4.55180 4.56551 4.84729 4.90320 4.99253 5.05237 5.15067 5.16718 5.37128 5.40927 5.50356 5.58491 5.63804 5.77516 5.81613 6.04189 6.08424 6.26914 6.28894 6.31674 6.33723 6.65144 6.70078 7.29773 7.99467 8.00245 8.41229 9.21348 9.93137 10.14458 11.40247 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.016222 B = 0.003859 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.666811 B = 7254.121017 C = 8129.071631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.888 3.112 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.753 5.753 10 C 0.191 3.809 11 C -0.127 4.127 12 C -0.089 4.089 13 C 0.122 3.878 14 N -0.718 5.718 15 C 0.541 3.459 16 O -0.524 6.524 17 C -0.193 4.193 18 H 0.151 0.849 19 C -0.139 4.139 20 C 0.219 3.781 21 F -0.151 7.151 22 F -0.156 7.156 23 C -0.172 4.172 24 C -0.170 4.170 25 H 0.259 0.741 26 H 0.363 0.637 27 H 0.026 0.974 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.401 0.599 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.785 -2.851 12.262 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.399 5.399 10 C 0.064 3.936 11 C -0.128 4.128 12 C -0.127 4.127 13 C -0.001 4.001 14 N -0.369 5.369 15 C 0.325 3.675 16 O -0.400 6.400 17 C -0.215 4.215 18 H 0.169 0.831 19 C -0.177 4.177 20 C 0.182 3.818 21 F -0.131 7.131 22 F -0.136 7.136 23 C -0.210 4.210 24 C -0.207 4.207 25 H 0.069 0.931 26 H 0.196 0.804 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.235 0.765 34 H 0.151 0.849 35 H 0.155 0.845 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.279 -3.773 12.176 21.472 hybrid contribution 0.933 1.878 -0.046 2.098 sum 18.212 -1.895 12.130 21.964 Atomic orbital electron populations 1.69711 1.05122 1.25747 1.57560 1.24685 0.95196 0.97127 1.02120 0.86506 0.78835 0.85126 0.77689 1.21198 1.21846 1.20623 1.19072 0.80930 0.94733 1.42516 0.89290 1.42734 1.04262 1.03789 1.89093 1.20167 0.85632 0.89602 0.98179 1.21637 0.94451 1.03059 0.93645 1.21216 1.00654 0.98887 0.91900 1.21454 1.01456 0.96785 0.80382 1.45901 1.63999 1.19961 1.07007 1.19104 0.78289 0.85973 0.84103 1.90747 1.45529 1.16866 1.86850 1.23787 1.00221 1.03477 0.94064 0.83150 1.24305 0.92344 1.04161 0.96900 1.19688 0.81970 0.83562 0.96616 1.93083 1.79572 1.56906 1.83560 1.93060 1.78573 1.65037 1.76946 1.22983 1.00660 0.93334 1.03992 1.23021 1.01976 0.98134 0.97536 0.93088 0.80358 0.95651 0.94677 0.90291 0.91843 0.90059 0.91039 0.76489 0.84909 0.84496 0.89107 0.88655 0.88478 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.19 13.97 55.49 0.78 -28.41 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 3 Si 0.89 21.80 28.00 -169.99 -4.76 17.04 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.29 6.16 56.52 0.35 -5.94 16 7 C -0.24 -6.80 10.47 -15.06 -0.16 -6.96 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.75 -17.39 5.15 -59.90 -0.31 -17.70 16 10 C 0.19 3.63 5.84 -4.04 -0.02 3.60 16 11 C -0.13 -1.86 1.65 -154.51 -0.25 -2.11 16 12 C -0.09 -1.17 5.05 -26.73 -0.13 -1.30 16 13 C 0.12 1.68 5.44 -4.04 -0.02 1.65 16 14 N -0.72 -8.41 5.55 -60.29 -0.33 -8.74 16 15 C 0.54 6.93 7.24 -10.98 -0.08 6.85 16 16 O -0.52 -8.69 16.24 5.55 0.09 -8.60 16 17 C -0.19 -1.74 6.18 -91.77 -0.57 -2.30 16 18 H 0.15 0.93 8.14 -51.93 -0.42 0.51 16 19 C -0.14 -1.08 10.01 -26.73 -0.27 -1.35 16 20 C 0.22 2.09 5.20 -26.73 -0.14 1.95 16 21 F -0.15 -1.83 17.13 2.25 0.04 -1.79 16 22 F -0.16 -1.49 17.60 2.25 0.04 -1.45 16 23 C -0.17 -2.10 9.97 -26.70 -0.27 -2.36 16 24 C -0.17 -2.22 9.92 -26.69 -0.26 -2.48 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.36 8.16 4.48 -40.82 -0.18 7.97 16 27 H 0.03 0.50 8.10 -51.93 -0.42 0.08 16 28 H 0.04 0.69 7.49 -51.93 -0.39 0.30 16 29 H 0.08 1.16 7.12 -51.93 -0.37 0.79 16 30 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 31 H 0.08 1.35 7.45 -51.93 -0.39 0.97 16 32 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 33 H 0.40 3.54 8.48 -40.82 -0.35 3.19 16 34 H 0.13 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.14 1.18 7.67 -51.93 -0.40 0.79 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -33.56 338.69 -7.11 -40.67 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.48 Total: 8.65 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -2.27 Total: -4.78 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.13 Total: -54.85 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.08 Total: -3.23 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.76 Total: 17.04 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.56 -7.11 -40.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164458014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.812 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds