Wall clock time and date at job start Tue Mar 31 2020 06:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00411 * 2 1 4 4 H 1.48504 * 109.46893 * 273.45121 * 3 2 1 5 5 H 1.48503 * 109.46933 * 33.44711 * 3 2 1 6 6 H 1.48495 * 109.47392 * 153.45137 * 3 2 1 7 7 C 1.38815 * 119.99554 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99950 * 4.37315 * 7 2 1 9 9 N 1.36935 * 120.00043 * 184.37713 * 7 2 1 10 10 C 1.46495 * 120.00173 * 184.97391 * 9 7 2 11 11 C 1.53006 * 109.47026 * 175.03994 * 10 9 7 12 12 C 1.52998 * 115.54904 * 279.67646 * 11 10 9 13 13 C 1.53000 * 109.47724 * 294.51496 * 12 11 10 14 14 N 1.46496 * 109.47288 * 185.00868 * 13 12 11 15 15 C 1.34778 * 119.99945 * 184.86621 * 14 13 12 16 16 O 1.21287 * 119.99853 * 5.22905 * 15 14 13 17 17 C 1.50695 * 119.99736 * 185.22950 * 15 14 13 18 18 H 1.08999 * 115.55797 * 325.66811 * 17 15 14 19 19 C 1.53007 * 117.49622 * 179.97438 * 17 15 14 20 20 C 1.53002 * 60.00160 * 252.51427 * 19 17 15 21 21 F 1.39903 * 117.49589 * 252.51142 * 20 19 17 22 22 F 1.39898 * 117.49839 * 107.49301 * 20 19 17 23 23 C 1.53000 * 117.49461 * 133.97346 * 11 10 9 24 24 C 1.52995 * 60.00129 * 252.50950 * 23 11 10 25 25 H 0.96997 * 119.99436 * 0.02562 * 1 2 3 26 26 H 0.96996 * 119.99835 * 5.23802 * 9 7 2 27 27 H 1.09000 * 109.47435 * 295.03894 * 10 9 7 28 28 H 1.09001 * 109.47499 * 55.04046 * 10 9 7 29 29 H 1.09003 * 109.47043 * 54.51851 * 12 11 10 30 30 H 1.09002 * 109.46729 * 174.51139 * 12 11 10 31 31 H 1.08998 * 109.46598 * 305.00887 * 13 12 11 32 32 H 1.08997 * 109.46966 * 65.00164 * 13 12 11 33 33 H 0.97002 * 119.99984 * 4.85604 * 14 13 12 34 34 H 1.09001 * 117.49484 * 0.02562 * 19 17 15 35 35 H 1.09004 * 117.49661 * 144.99965 * 19 17 15 36 36 H 1.09003 * 117.50466 * 0.02562 * 23 11 10 37 37 H 1.09000 * 117.49583 * 145.02075 * 23 11 10 38 38 H 1.08999 * 117.50307 * 252.51717 * 24 23 11 39 39 H 1.09003 * 117.49852 * 107.49116 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4248 2.0884 -1.3976 5 1 1.4861 2.6305 0.7717 6 1 3.5824 1.4201 0.6257 7 6 2.0102 -1.2022 0.0005 8 1 1.4725 -2.1362 -0.0704 9 7 3.3766 -1.2040 0.0910 10 6 4.1162 -2.4638 -0.0179 11 6 5.6188 -2.1755 -0.0079 12 6 6.2110 -1.7139 -1.3410 13 6 6.1095 -2.8471 -2.3640 14 7 6.7826 -2.4486 -3.6026 15 6 6.7365 -3.2526 -4.6833 16 8 6.0603 -4.2593 -4.6618 17 6 7.5251 -2.9008 -5.9183 18 1 7.6157 -1.8356 -6.1308 19 6 7.4317 -3.8540 -7.1115 20 6 8.7127 -3.7964 -6.2770 21 9 9.8318 -3.1854 -6.8528 22 9 8.9834 -4.8791 -5.4334 23 6 6.4987 -3.0438 0.8937 24 6 6.2170 -1.5884 1.2721 25 1 -0.4849 0.8401 -0.0004 26 1 3.8544 -0.3716 0.2311 27 1 3.8642 -3.1073 0.8251 28 1 3.8483 -2.9632 -0.9490 29 1 5.6586 -0.8469 -1.7032 30 1 7.2578 -1.4447 -1.1997 31 1 6.5857 -3.7419 -1.9633 32 1 5.0601 -3.0561 -2.5716 33 1 7.2613 -1.6060 -3.6450 34 1 6.7994 -4.7353 -7.0033 35 1 7.4604 -3.4158 -8.1092 36 1 6.0072 -3.8206 1.4794 37 1 7.4998 -3.2863 0.5371 38 1 7.0327 -0.8734 1.1644 39 1 5.5401 -1.4074 2.1070 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164458015.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:38 Heat of formation + Delta-G solvation = -68.757114 kcal Electronic energy + Delta-G solvation = -22556.191536 eV Core-core repulsion = 18750.854654 eV Total energy + Delta-G solvation = -3805.336882 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.09792 -47.76686 -40.08649 -38.48578 -36.08227 -34.99991 -34.01678 -31.10998 -30.40425 -26.45194 -25.34704 -23.04566 -22.92716 -22.45352 -21.67419 -20.68026 -19.03835 -18.49922 -17.67530 -17.35834 -16.64075 -16.38969 -15.92500 -15.48456 -15.05737 -14.54288 -14.42094 -14.29253 -14.27909 -13.96938 -13.84590 -13.63714 -13.23274 -12.73903 -12.65256 -12.24117 -12.16175 -11.75603 -11.66908 -11.38028 -11.26206 -10.91299 -10.77729 -10.63046 -10.23015 -10.07775 -9.89910 -9.63786 -9.49442 -9.21457 -8.88153 -7.20264 -5.76833 -3.11653 1.82936 2.55182 2.77592 3.03194 3.34839 3.38150 3.43829 3.74032 3.90195 4.00806 4.13858 4.47999 4.58431 4.81476 4.91322 4.97703 5.02179 5.10368 5.12957 5.33845 5.36806 5.51022 5.55529 5.60572 5.79118 5.85114 5.97824 6.08600 6.21252 6.26830 6.28817 6.35094 6.67044 6.72624 7.23013 7.93437 8.02035 8.42911 9.23297 9.95085 10.16618 11.41736 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.019382 B = 0.003434 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.304176 B = 8152.838396 C = 8771.568498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.753 5.753 10 C 0.190 3.810 11 C -0.129 4.129 12 C -0.089 4.089 13 C 0.120 3.880 14 N -0.719 5.719 15 C 0.540 3.460 16 O -0.522 6.522 17 C -0.194 4.194 18 H 0.150 0.850 19 C -0.140 4.140 20 C 0.221 3.779 21 F -0.156 7.156 22 F -0.150 7.150 23 C -0.172 4.172 24 C -0.167 4.167 25 H 0.259 0.741 26 H 0.363 0.637 27 H 0.025 0.975 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.401 0.599 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.060 -4.597 -10.959 24.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.399 5.399 10 C 0.063 3.937 11 C -0.130 4.130 12 C -0.127 4.127 13 C -0.003 4.003 14 N -0.370 5.370 15 C 0.324 3.676 16 O -0.397 6.397 17 C -0.216 4.216 18 H 0.168 0.832 19 C -0.178 4.178 20 C 0.183 3.817 21 F -0.136 7.136 22 F -0.131 7.131 23 C -0.209 4.209 24 C -0.204 4.204 25 H 0.069 0.931 26 H 0.197 0.803 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.235 0.765 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 20.369 -5.443 -10.935 23.751 hybrid contribution 1.006 1.788 0.132 2.055 sum 21.375 -3.656 -10.803 24.227 Atomic orbital electron populations 1.69715 1.05132 1.25752 1.57584 1.24695 0.95214 0.97165 1.02105 0.86507 0.79083 0.85079 0.77612 1.21246 1.21810 1.20401 1.19075 0.80947 0.94719 1.42532 0.89318 1.42747 1.04220 1.03865 1.89042 1.20197 0.85266 0.89400 0.98823 1.21653 0.95932 1.04710 0.90677 1.21237 1.00338 0.98029 0.93080 1.21484 0.98769 0.97734 0.82263 1.45904 1.55228 1.23395 1.12466 1.19120 0.81592 0.83711 0.83131 1.90761 1.40493 1.26269 1.82227 1.23756 0.98744 1.01364 0.97737 0.83241 1.24315 0.94744 1.02353 0.96371 1.19677 0.80167 0.86600 0.95224 1.93061 1.54295 1.82298 1.83941 1.93089 1.94753 1.54154 1.71073 1.23011 1.00127 0.94279 1.03500 1.22950 1.02749 0.95846 0.98880 0.93097 0.80348 0.95711 0.94553 0.90271 0.91751 0.91310 0.89912 0.76473 0.84468 0.84911 0.88642 0.89198 0.89318 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.44 13.97 55.49 0.78 -28.66 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 21.98 27.98 -169.99 -4.76 17.23 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.39 6.19 56.52 0.35 -6.04 16 7 C -0.24 -6.89 10.47 -15.06 -0.16 -7.04 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 9 N -0.75 -17.65 5.34 -59.91 -0.32 -17.97 16 10 C 0.19 3.64 6.12 -4.04 -0.02 3.62 16 11 C -0.13 -1.88 1.53 -154.51 -0.24 -2.12 16 12 C -0.09 -1.11 5.22 -26.73 -0.14 -1.25 16 13 C 0.12 1.54 5.47 -4.04 -0.02 1.52 16 14 N -0.72 -7.73 5.55 -60.30 -0.33 -8.06 16 15 C 0.54 6.51 7.24 -10.99 -0.08 6.43 16 16 O -0.52 -8.39 16.24 5.55 0.09 -8.30 16 17 C -0.19 -1.59 6.18 -91.77 -0.57 -2.16 16 18 H 0.15 0.77 8.14 -51.93 -0.42 0.35 16 19 C -0.14 -1.00 10.01 -26.73 -0.27 -1.27 16 20 C 0.22 2.00 5.20 -26.73 -0.14 1.86 16 21 F -0.16 -1.40 17.60 2.25 0.04 -1.37 16 22 F -0.15 -1.77 17.13 2.25 0.04 -1.73 16 23 C -0.17 -2.11 9.90 -26.73 -0.26 -2.38 16 24 C -0.17 -2.27 9.82 -26.73 -0.26 -2.53 16 25 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 26 H 0.36 8.32 5.35 -40.82 -0.22 8.10 16 27 H 0.03 0.49 7.95 -51.93 -0.41 0.08 16 28 H 0.04 0.72 6.73 -51.93 -0.35 0.37 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.29 6.92 -51.93 -0.36 0.93 16 33 H 0.40 3.08 8.48 -40.82 -0.35 2.73 16 34 H 0.14 1.12 7.67 -51.93 -0.40 0.72 16 35 H 0.13 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 339.50 15.07 5.12 5.12 Total: -1.00 -34.11 339.50 -7.10 -41.21 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -5.49 Total: 7.85 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -2.26 Total: -5.31 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.12 Total: -54.70 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.09 Total: -8.30 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.08 Total: -3.09 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.76 Total: 17.23 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.11 -7.10 -41.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164458015.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.546 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds