Wall clock time and date at job start Tue Mar 31 2020 06:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00292 * 2 1 4 4 H 1.48495 * 109.47246 * 240.00694 * 3 2 1 5 5 H 1.48504 * 109.47026 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46894 * 120.00054 * 3 2 1 7 7 C 1.37878 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99783 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00256 * 359.97438 * 7 2 1 10 10 O 1.42896 * 109.47265 * 180.02562 * 9 7 2 11 11 C 1.36000 * 116.99985 * 179.97438 * 10 9 7 12 12 C 1.38709 * 119.98041 * 0.28391 * 11 10 9 13 13 C 1.38109 * 120.01709 * 180.23092 * 12 11 10 14 14 C 1.38863 * 119.98193 * 359.48715 * 13 12 11 15 15 N 1.39941 * 120.02070 * 180.27779 * 14 13 12 16 16 C 1.46495 * 120.00086 * 180.02562 * 15 14 13 17 17 C 1.52997 * 109.47067 * 180.02562 * 16 15 14 18 18 N 1.46504 * 109.47268 * 180.02562 * 17 16 15 19 19 C 1.35494 * 126.98086 * 269.68965 * 18 17 16 20 20 N 1.30522 * 107.30300 * 179.83398 * 19 18 17 21 21 N 1.28598 * 109.67689 * 0.43558 * 20 19 18 22 22 C 1.30519 * 109.66887 * 359.72102 * 21 20 19 23 23 C 1.38866 * 119.96096 * 0.25439 * 14 13 12 24 24 C 1.38109 * 119.97704 * 0.02562 * 23 14 13 25 25 H 0.97001 * 120.00009 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.46655 * 60.00261 * 9 7 2 27 27 H 1.08999 * 109.47263 * 300.00862 * 9 7 2 28 28 H 1.07998 * 119.98839 * 359.97438 * 12 11 10 29 29 H 1.08002 * 120.01139 * 179.77132 * 13 12 11 30 30 H 0.97001 * 119.99664 * 0.02562 * 15 14 13 31 31 H 1.08999 * 109.47146 * 300.00393 * 16 15 14 32 32 H 1.09002 * 109.47180 * 59.99736 * 16 15 14 33 33 H 1.09001 * 109.46883 * 299.99450 * 17 16 15 34 34 H 1.08996 * 109.47256 * 60.00100 * 17 16 15 35 35 H 1.07991 * 126.34696 * 359.97152 * 19 18 17 36 36 H 1.07998 * 126.34278 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.00913 * 180.02562 * 23 14 13 38 38 H 1.08003 * 119.98457 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.6596 -4.8421 0.0000 12 6 0.2845 -5.0233 -0.0054 13 6 -0.2443 -6.2991 -0.0001 14 6 0.6012 -7.4007 0.0000 15 7 0.0663 -8.6939 -0.0004 16 6 0.9586 -9.8557 0.0002 17 6 0.1253 -11.1388 -0.0011 18 7 1.0176 -12.3007 0.0002 19 6 1.5111 -12.9506 -1.0815 20 7 2.2637 -13.9217 -0.6410 21 7 2.2618 -13.9218 0.6450 22 6 1.5126 -12.9470 1.0833 23 6 1.9778 -7.2184 0.0000 24 6 2.5048 -5.9418 0.0005 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 0.6245 -2.5571 0.8896 28 1 -0.3729 -4.1664 -0.0097 29 1 -1.3151 -6.4401 -0.0006 30 1 -0.8954 -8.8209 -0.0012 31 1 1.5882 -9.8308 -0.8892 32 1 1.5868 -9.8308 0.8907 33 1 -0.5044 -11.1639 0.8883 34 1 -0.5025 -11.1634 -0.8918 35 1 1.3191 -12.7085 -2.1163 36 1 1.3220 -12.7016 2.1176 37 1 2.6361 -8.0745 -0.0003 38 1 3.5755 -5.7998 0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168876216.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:01 Heat of formation + Delta-G solvation = 72.972045 kcal Electronic energy + Delta-G solvation = -20821.420603 eV Core-core repulsion = 17472.918745 eV Total energy + Delta-G solvation = -3348.501858 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.49339 -39.56265 -37.76039 -36.27433 -34.27024 -32.87160 -30.96470 -30.84026 -30.03910 -28.05206 -26.68138 -24.54382 -23.19391 -22.71152 -22.48806 -21.85156 -20.63867 -18.24123 -17.42570 -17.02957 -16.37279 -16.33421 -15.81535 -15.68623 -15.32954 -14.81589 -14.66486 -14.51428 -14.27517 -13.97987 -13.23468 -12.99751 -12.88447 -12.68674 -12.18549 -12.00719 -11.89139 -11.57257 -11.07683 -11.00953 -10.78291 -10.70635 -10.53887 -10.47813 -10.16576 -9.82919 -9.27969 -9.21002 -8.68083 -8.52497 -6.81922 -6.25475 -4.28786 1.38103 1.67945 1.89626 2.02484 2.53550 3.25211 3.28057 3.31428 3.33148 3.88011 4.05000 4.16706 4.18452 4.22707 4.24318 4.49199 4.59451 4.90458 4.95220 5.11681 5.14202 5.17682 5.25330 5.38568 5.65903 5.70498 5.73519 5.96156 6.27316 6.35317 6.39050 6.55080 6.76533 6.96834 7.05584 7.16119 7.35141 7.62146 7.68583 7.96803 8.32168 8.52365 8.85524 9.36485 10.85773 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.055715 B = 0.002187 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.441075 B =12800.916187 C =13115.775145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.060 3.940 3 Si 0.913 3.087 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.069 0.931 9 C 0.194 3.806 10 O -0.321 6.321 11 C 0.110 3.890 12 C -0.167 4.167 13 C -0.144 4.144 14 C 0.150 3.850 15 N -0.756 5.756 16 C 0.118 3.882 17 C 0.097 3.903 18 N -0.474 5.474 19 C 0.154 3.846 20 N -0.299 5.299 21 N -0.299 5.299 22 C 0.154 3.846 23 C -0.153 4.153 24 C -0.126 4.126 25 H 0.267 0.733 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.134 0.866 29 H 0.117 0.883 30 H 0.396 0.604 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.219 0.781 36 H 0.219 0.781 37 H 0.116 0.884 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.759 -21.562 -0.009 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.088 0.912 9 C 0.122 3.878 10 O -0.235 6.235 11 C 0.061 3.939 12 C -0.186 4.186 13 C -0.167 4.167 14 C 0.052 3.948 15 N -0.393 5.393 16 C -0.008 4.008 17 C -0.027 4.027 18 N -0.165 5.165 19 C -0.133 4.133 20 N -0.138 5.138 21 N -0.138 5.138 22 C -0.133 4.133 23 C -0.175 4.175 24 C -0.146 4.146 25 H 0.077 0.923 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.152 0.848 29 H 0.135 0.865 30 H 0.231 0.769 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.235 0.765 36 H 0.235 0.765 37 H 0.134 0.866 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.620 -22.650 -0.008 22.801 hybrid contribution -1.268 2.127 -0.001 2.476 sum -3.888 -20.523 -0.009 20.888 Atomic orbital electron populations 1.69938 1.06123 1.27663 1.49663 1.24938 0.95055 0.99537 0.94730 0.86305 0.79279 0.81422 0.78991 1.19858 1.21022 1.19863 1.20953 0.94235 0.88853 1.52101 0.91238 1.20575 0.88693 0.81949 0.96616 1.86121 1.38713 1.11655 1.86971 1.19103 0.91480 0.86601 0.96683 1.21268 0.94858 0.97673 1.04840 1.20321 0.98455 0.90977 1.06901 1.17451 0.92336 0.83858 1.01151 1.44025 1.07245 1.01526 1.86524 1.21400 0.93118 0.83861 1.02416 1.22047 0.91740 0.82730 1.06147 1.46386 1.37780 1.25114 1.07267 1.26618 0.97929 0.93488 0.95305 1.74293 1.17791 1.18346 1.03345 1.74295 1.17897 1.18183 1.03393 1.26618 0.98028 0.93428 0.95269 1.20290 0.92716 0.96505 1.07995 1.20199 0.99479 0.89984 1.04908 0.92322 0.96293 0.96299 0.84802 0.86528 0.76936 0.91804 0.91798 0.87680 0.87662 0.76487 0.76487 0.86572 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 13.29 55.43 0.74 -25.01 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.52 -14.91 9.43 -34.44 -0.32 -15.23 16 8 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 9 C 0.19 5.14 4.49 36.01 0.16 5.30 16 10 O -0.32 -7.77 10.12 -19.74 -0.20 -7.97 16 11 C 0.11 2.20 6.69 -39.24 -0.26 1.93 16 12 C -0.17 -3.04 9.03 -39.45 -0.36 -3.39 16 13 C -0.14 -2.07 9.89 -39.40 -0.39 -2.46 16 14 C 0.15 1.89 6.66 -83.69 -0.56 1.33 16 15 N -0.76 -6.05 5.74 -58.59 -0.34 -6.38 16 16 C 0.12 0.70 5.24 -4.05 -0.02 0.68 16 17 C 0.10 0.30 6.31 -4.04 -0.03 0.28 16 18 N -0.47 -2.71 2.75 -119.97 -0.33 -3.04 16 19 C 0.15 1.11 12.74 -89.94 -1.15 -0.04 16 20 N -0.30 -3.38 12.21 29.69 0.36 -3.02 16 21 N -0.30 -3.38 12.21 29.69 0.36 -3.02 16 22 C 0.15 1.11 12.74 -89.95 -1.15 -0.04 16 23 C -0.15 -2.09 9.31 -39.40 -0.37 -2.46 16 24 C -0.13 -2.12 9.98 -39.46 -0.39 -2.51 16 25 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.02 0.52 7.65 -51.92 -0.40 0.12 16 27 H 0.02 0.52 7.67 -51.93 -0.40 0.12 16 28 H 0.13 2.59 6.29 -52.49 -0.33 2.26 16 29 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.40 2.32 8.49 -40.82 -0.35 1.97 16 31 H 0.06 0.44 7.95 -51.93 -0.41 0.02 16 32 H 0.06 0.44 7.95 -51.93 -0.41 0.02 16 33 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.11 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.22 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.22 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.12 1.32 6.73 -52.49 -0.35 0.97 16 38 H 0.13 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 332.52 15.07 5.01 5.01 Total: -1.00 -34.44 332.52 -9.07 -43.52 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -4.73 Total: -1.19 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -4.93 Total: -15.04 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.80 Total: -40.47 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.20 Total: -7.97 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.44 -9.07 -43.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168876216.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.488 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds