Wall clock time and date at job start Tue Mar 31 2020 06:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 113.99836 * 2 1 4 4 H 1.08993 * 110.78196 * 31.79010 * 3 2 1 5 5 C 1.54327 * 110.72400 * 268.54642 * 3 2 1 6 6 N 1.47022 * 107.27336 * 219.44644 * 5 3 2 7 7 C 1.36938 * 125.64666 * 178.90556 * 6 5 3 8 8 H 1.07994 * 119.99970 * 180.02562 * 7 6 5 9 9 C 1.38809 * 120.00073 * 0.02594 * 7 6 5 10 10 N 1.31621 * 120.00035 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 119.99990 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47265 * 59.99929 * 11 9 7 13 13 H 1.48507 * 109.47363 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47157 * 300.00028 * 11 9 7 15 15 C 1.47425 * 108.70334 * 358.94217 * 6 5 3 16 16 C 1.54915 * 104.83334 * 24.12789 * 15 6 5 17 17 H 1.09001 * 111.00387 * 81.05917 * 16 15 6 18 18 N 1.46496 * 111.00547 * 204.91767 * 16 15 6 19 19 C 1.34774 * 119.99681 * 267.19663 * 18 16 15 20 20 O 1.21273 * 120.00550 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99732 * 179.97438 * 19 18 16 22 22 C 1.52999 * 109.47328 * 179.97438 * 21 19 18 23 23 S 1.81398 * 109.47451 * 180.02562 * 22 21 19 24 24 C 1.81400 * 103.00009 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.46833 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46602 * 299.99381 * 1 2 3 27 27 H 1.08995 * 109.46980 * 59.99438 * 1 2 3 28 28 H 1.08997 * 109.87800 * 338.86828 * 5 3 2 29 29 H 1.09000 * 109.87987 * 99.87068 * 5 3 2 30 30 H 0.96998 * 119.99944 * 179.97438 * 10 9 7 31 31 H 1.08997 * 110.36855 * 142.96531 * 15 6 5 32 32 H 1.08999 * 110.36490 * 265.17846 * 15 6 5 33 33 H 0.97002 * 120.00223 * 87.19063 * 18 16 15 34 34 H 1.08994 * 109.47797 * 300.00391 * 21 19 18 35 35 H 1.09010 * 109.46664 * 60.00294 * 21 19 18 36 36 H 1.09004 * 109.47336 * 300.00503 * 22 21 19 37 37 H 1.09000 * 109.46789 * 60.00031 * 22 21 19 38 38 H 1.09000 * 109.46979 * 179.97438 * 24 23 22 39 39 H 1.08994 * 109.47384 * 299.99806 * 24 23 22 40 40 H 1.09003 * 109.47203 * 60.00086 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3762 2.0110 0.5368 5 6 2.2658 1.7894 -1.4429 6 7 3.5562 2.4940 -1.4450 7 6 4.1559 3.0578 -2.5394 8 1 5.1090 3.5551 -2.4365 9 6 3.5388 2.9901 -3.7809 10 7 2.3774 2.3835 -3.9063 11 14 4.3572 3.7585 -5.2738 12 1 5.6803 3.1217 -5.4957 13 1 3.5014 3.5502 -6.4696 14 1 4.5408 5.2140 -5.0434 15 6 4.0980 2.4921 -0.0739 16 6 3.4354 1.2718 0.6128 17 1 3.9515 0.3481 0.3507 18 7 3.3864 1.4495 2.0661 19 6 4.3815 0.9690 2.8376 20 8 5.3173 0.3891 2.3288 21 6 4.3314 1.1523 4.3326 22 6 5.5717 0.5186 4.9660 23 16 5.5111 0.7386 6.7655 24 6 7.0377 -0.0648 7.3265 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 2.3088 0.9350 -2.1183 29 1 1.4703 2.4670 -1.7530 30 1 1.9460 2.3365 -4.7738 31 1 5.1813 2.3740 -0.0942 32 1 3.8272 3.4132 0.4422 33 1 2.6378 1.9130 2.4731 34 1 4.3064 2.2163 4.5676 35 1 3.4363 0.6717 4.7277 36 1 5.5964 -0.5455 4.7310 37 1 6.4669 0.9988 4.5708 38 1 7.1087 0.0077 8.4118 39 1 7.0253 -1.1142 7.0321 40 1 7.8965 0.4298 6.8727 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211817618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:21 Heat of formation + Delta-G solvation = -56.531421 kcal Electronic energy + Delta-G solvation = -21047.288606 eV Core-core repulsion = 17796.322256 eV Total energy + Delta-G solvation = -3250.966350 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 288.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.80402 -38.19755 -35.92994 -34.07846 -33.04924 -31.69503 -29.27148 -28.81368 -27.29225 -26.14834 -24.97434 -23.72481 -20.66668 -20.50630 -19.93153 -17.56241 -16.99809 -16.39394 -16.11477 -15.87816 -15.52747 -14.89146 -14.50513 -14.27797 -14.15633 -14.01831 -13.84447 -13.45181 -13.22880 -12.84435 -12.66962 -12.29065 -12.09037 -11.90558 -11.68023 -11.47841 -11.25550 -11.02278 -10.80801 -10.76112 -10.29082 -10.19534 -10.00082 -9.81993 -9.75697 -9.14020 -8.78124 -8.59557 -7.96850 -6.90673 -5.74625 -3.09852 1.35682 2.29338 2.73760 3.32106 3.40815 3.44653 3.46061 4.12673 4.49633 4.51679 4.73306 4.84704 4.85472 4.86538 5.13234 5.30368 5.39466 5.40871 5.47075 5.48827 5.57354 5.64109 5.67337 5.70058 5.84855 5.92901 6.03127 6.14364 6.49742 6.59764 6.83418 7.23758 7.46116 7.63432 7.69779 7.84675 8.18735 8.34823 9.16073 9.76176 10.39192 11.36741 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.022263 B = 0.003400 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.380077 B = 8234.052398 C = 9246.959758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.379 6.379 3 C 0.055 3.945 4 H 0.062 0.938 5 C 0.164 3.836 6 N -0.600 5.600 7 C -0.230 4.230 8 H 0.080 0.920 9 C -0.007 4.007 10 N -0.923 5.923 11 Si 0.915 3.085 12 H -0.284 1.284 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.131 3.869 16 C 0.133 3.867 17 H 0.107 0.893 18 N -0.714 5.714 19 C 0.518 3.482 20 O -0.539 6.539 21 C -0.125 4.125 22 C -0.066 4.066 23 S -0.272 6.272 24 C -0.118 4.118 25 H 0.079 0.921 26 H 0.033 0.967 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.048 0.952 30 H 0.254 0.746 31 H 0.049 0.951 32 H 0.023 0.977 33 H 0.397 0.603 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.001 -3.243 19.370 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C -0.004 4.004 4 H 0.080 0.920 5 C 0.038 3.962 6 N -0.328 5.328 7 C -0.358 4.358 8 H 0.098 0.902 9 C -0.203 4.203 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.211 1.211 15 C 0.003 3.997 16 C 0.028 3.972 17 H 0.125 0.875 18 N -0.364 5.364 19 C 0.302 3.698 20 O -0.416 6.416 21 C -0.166 4.166 22 C -0.214 4.214 23 S -0.047 6.047 24 C -0.287 4.287 25 H 0.097 0.903 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.231 0.769 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.019 -3.330 19.386 19.670 hybrid contribution 0.638 0.258 -1.333 1.501 sum 0.619 -3.072 18.053 18.323 Atomic orbital electron populations 1.22701 0.81674 1.02036 0.99845 1.87904 1.19168 1.27536 1.95082 1.23839 0.92654 0.84126 0.99775 0.91965 1.21584 0.88572 0.96933 0.89104 1.44244 1.20142 1.65723 1.02681 1.19030 1.02491 1.28916 0.85364 0.90188 1.24821 0.97178 1.00663 0.97649 1.69928 1.16339 1.47397 1.23356 0.86150 0.78390 0.78842 0.82072 1.21037 1.21561 1.21114 1.21823 0.97429 0.93628 0.86789 1.22385 0.96174 1.01215 0.77467 0.87511 1.45920 1.24282 1.58625 1.07619 1.20370 0.82376 0.78457 0.88579 1.90725 1.33638 1.41909 1.75326 1.21358 0.99122 1.03790 0.92334 1.23102 1.01547 1.05081 0.91704 1.86731 1.32663 1.77576 1.07697 1.23358 0.97240 1.03051 1.05016 0.90265 0.94825 0.93531 0.92003 0.93379 0.93588 0.93231 0.95906 0.76871 0.87949 0.88049 0.89145 0.89075 0.88109 0.90355 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.88 101.05 1.10 1.58 16 2 O -0.38 -6.95 10.43 -35.23 -0.37 -7.31 16 3 C 0.06 1.03 3.05 -24.89 -0.08 0.96 16 4 H 0.06 1.02 7.75 -51.93 -0.40 0.62 16 5 C 0.16 3.95 5.15 -3.06 -0.02 3.94 16 6 N -0.60 -15.43 3.39 -170.07 -0.58 -16.01 16 7 C -0.23 -6.45 10.28 -15.06 -0.15 -6.60 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 10 N -0.92 -26.98 10.31 55.49 0.57 -26.41 16 11 Si 0.92 22.15 29.55 -169.99 -5.02 17.13 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.13 2.77 6.93 -2.53 -0.02 2.76 16 16 C 0.13 2.47 3.15 -65.78 -0.21 2.26 16 17 H 0.11 2.29 7.54 -51.93 -0.39 1.90 16 18 N -0.71 -10.06 5.20 -51.72 -0.27 -10.33 16 19 C 0.52 7.36 7.83 -10.98 -0.09 7.27 16 20 O -0.54 -9.94 15.62 5.56 0.09 -9.85 16 21 C -0.12 -1.24 5.71 -27.88 -0.16 -1.40 16 22 C -0.07 -0.68 5.23 37.16 0.19 -0.49 16 23 S -0.27 -2.60 22.38 -107.50 -2.41 -5.01 16 24 C -0.12 -0.82 10.76 101.05 1.09 0.26 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 1.71 7.29 -51.93 -0.38 1.33 16 29 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 30 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.40 4.31 8.57 -40.82 -0.35 3.96 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.09 0.99 8.10 -51.92 -0.42 0.57 16 37 H 0.09 1.01 8.10 -51.92 -0.42 0.59 16 38 H 0.10 0.57 8.14 -51.92 -0.42 0.14 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 LS Contribution 345.03 15.07 5.20 5.20 Total: -1.00 -32.87 345.03 -7.74 -40.61 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.52 Total: 1.72 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 1.57 Total: 10.25 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.27 Total: -52.74 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.28 Total: -17.16 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -2.41 Total: -5.01 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.87 -7.74 -40.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211817618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.921 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds