Wall clock time and date at job start Tue Mar 31 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38692 * 119.16838 * 2 1 4 4 C 1.39302 * 119.36178 * 179.71707 * 3 2 1 5 5 C 1.47861 * 121.08826 * 180.25223 * 4 3 2 6 6 O 1.21553 * 119.99895 * 180.02562 * 5 4 3 7 7 N 1.34780 * 120.00602 * 0.02562 * 5 4 3 8 8 C 1.46492 * 120.00545 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.46865 * 325.00150 * 8 7 5 10 10 C 1.53000 * 109.47143 * 84.99357 * 8 7 5 11 11 C 1.50693 * 109.47458 * 204.99632 * 8 7 5 12 12 H 1.08000 * 119.99577 * 359.97438 * 11 8 7 13 13 C 1.37875 * 120.00401 * 180.02562 * 11 8 7 14 14 N 1.31523 * 119.99733 * 359.97438 * 13 11 8 15 15 Si 1.86801 * 120.00208 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47188 * 89.99570 * 15 13 11 17 17 H 1.48500 * 109.47110 * 209.99629 * 15 13 11 18 18 H 1.48498 * 109.46902 * 329.99690 * 15 13 11 19 19 C 1.41274 * 117.81658 * 0.28042 * 4 3 2 20 20 C 1.41114 * 133.90134 * 179.97438 * 19 4 3 21 21 N 1.30245 * 108.58234 * 180.02562 * 20 19 4 22 22 N 1.39991 * 109.75378 * 359.97438 * 21 20 19 23 23 C 1.46500 * 125.90910 * 180.02562 * 22 21 20 24 24 C 1.37079 * 108.18586 * 0.02562 * 22 21 20 25 25 N 1.31457 * 119.16065 * 180.26130 * 2 1 3 26 26 H 1.09003 * 109.46738 * 89.99597 * 1 2 3 27 27 H 1.08990 * 109.47707 * 210.00035 * 1 2 3 28 28 H 1.08999 * 109.46853 * 330.00387 * 1 2 3 29 29 H 1.08002 * 120.32203 * 359.97438 * 3 2 1 30 30 H 0.96999 * 119.99487 * 359.97438 * 7 5 4 31 31 H 1.08999 * 109.47062 * 60.00015 * 10 8 7 32 32 H 1.09004 * 109.47231 * 180.02562 * 10 8 7 33 33 H 1.09002 * 109.47419 * 300.00267 * 10 8 7 34 34 H 0.96996 * 119.99304 * 180.02562 * 14 13 11 35 35 H 1.08004 * 125.71124 * 359.96092 * 20 19 4 36 36 H 1.09005 * 109.46636 * 269.97329 * 23 22 21 37 37 H 1.08994 * 109.46932 * 29.97043 * 23 22 21 38 38 H 1.09000 * 109.47049 * 149.97326 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1830 1.2110 0.0000 4 6 3.5760 1.2158 0.0060 5 6 4.3351 2.4846 0.0118 6 8 5.5505 2.4656 0.0165 7 7 3.6797 3.6622 0.0118 8 6 4.4318 4.9193 0.0182 9 1 5.3382 4.7973 0.6112 10 6 4.8079 5.2958 -1.4163 11 6 3.5823 6.0101 0.6175 12 1 2.5818 5.7891 0.9592 13 6 4.0817 7.2904 0.7288 14 7 5.2998 7.5596 0.3122 15 14 3.0288 8.6424 1.4724 16 1 3.2529 8.6939 2.9395 17 1 3.4000 9.9474 0.8688 18 1 1.5964 8.3605 1.2001 19 6 4.2394 -0.0315 0.0057 20 6 5.5966 -0.4179 0.0102 21 7 5.6578 -1.7189 0.0069 22 7 4.3640 -2.2534 0.0008 23 6 4.0229 -3.6781 -0.0037 24 6 3.4713 -1.2130 -0.0002 25 7 2.1475 -1.1479 -0.0052 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6347 2.1415 -0.0004 30 1 2.7098 3.6774 0.0077 31 1 3.9016 5.4177 -2.0095 32 1 5.3680 6.2310 -1.4116 33 1 5.4225 4.5068 -1.8499 34 1 5.6512 8.4602 0.3909 35 1 6.4431 0.2530 0.0144 36 1 3.9417 -4.0289 -1.0326 37 1 4.8021 -4.2398 0.5113 38 1 3.0711 -3.8254 0.5067 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175475442.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:35 Heat of formation + Delta-G solvation = 65.803463 kcal Electronic energy + Delta-G solvation = -22276.640712 eV Core-core repulsion = 18927.828001 eV Total energy + Delta-G solvation = -3348.812711 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.77238 -39.11957 -38.15976 -34.96645 -33.85902 -32.69173 -31.95966 -31.63257 -28.88459 -27.52291 -26.83550 -25.32083 -24.23231 -22.42428 -21.55529 -20.59383 -19.57510 -17.85123 -17.28938 -16.96420 -15.99518 -15.96177 -15.22073 -14.62065 -14.41893 -14.37414 -14.28513 -13.95490 -13.63654 -13.20438 -12.96849 -12.83669 -12.60364 -12.47282 -12.19173 -11.84094 -11.76406 -11.13763 -11.03608 -11.01559 -10.84235 -10.43675 -10.34008 -10.28188 -9.89949 -9.17253 -9.10046 -8.80920 -8.60802 -8.37321 -8.02723 -6.17102 -4.26914 0.42143 1.12930 2.10130 2.48415 3.22162 3.24092 3.29120 3.30471 3.73431 3.97568 3.98460 4.30046 4.40125 4.70044 4.78004 4.83228 5.06525 5.09656 5.15685 5.29105 5.36111 5.37927 5.43595 5.49509 5.66085 5.82162 5.94860 6.25032 6.48901 6.76866 6.77532 6.89891 7.07576 7.31816 7.41691 7.47083 7.62595 7.82817 7.84252 8.08241 8.50915 8.68572 8.93718 9.40426 10.88898 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.024430 B = 0.003977 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.834708 B = 7039.207199 C = 7911.671376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.195 3.805 3 C -0.186 4.186 4 C 0.011 3.989 5 C 0.540 3.460 6 O -0.538 6.538 7 N -0.693 5.693 8 C 0.263 3.737 9 H 0.052 0.948 10 C -0.148 4.148 11 C -0.536 4.536 12 H 0.062 0.938 13 C 0.067 3.933 14 N -0.882 5.882 15 Si 0.903 3.097 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.189 4.189 20 C 0.106 3.894 21 N -0.250 5.250 22 N -0.398 5.398 23 C 0.117 3.883 24 C 0.311 3.689 25 N -0.499 5.499 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.148 0.852 30 H 0.390 0.610 31 H 0.028 0.972 32 H 0.092 0.908 33 H 0.016 0.984 34 H 0.265 0.735 35 H 0.208 0.792 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.293 -16.322 -1.223 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.045 3.955 3 C -0.209 4.209 4 C -0.003 4.003 5 C 0.324 3.676 6 O -0.417 6.417 7 N -0.341 5.341 8 C 0.162 3.838 9 H 0.070 0.930 10 C -0.206 4.206 11 C -0.575 4.575 12 H 0.080 0.920 13 C -0.136 4.136 14 N -0.519 5.519 15 Si 0.730 3.270 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.200 4.200 20 C -0.090 4.090 21 N -0.064 5.064 22 N -0.189 5.189 23 C -0.024 4.024 24 C 0.071 3.929 25 N -0.216 5.216 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.165 0.835 30 H 0.224 0.776 31 H 0.047 0.953 32 H 0.111 0.889 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.225 0.775 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.907 -18.168 -1.243 19.477 hybrid contribution -1.054 2.128 0.344 2.399 sum -7.961 -16.041 -0.899 17.930 Atomic orbital electron populations 1.20797 0.87780 1.03997 1.03600 1.21103 0.96672 0.86553 0.91144 1.22020 0.93338 0.99762 1.05757 1.20288 0.93288 0.93040 0.93702 1.18026 0.87487 0.83375 0.78719 1.90707 1.13131 1.87280 1.50566 1.46525 1.10310 1.06593 1.70631 1.18848 0.92678 0.77953 0.94286 0.92974 1.22089 0.99399 1.02035 0.97119 1.21184 1.00925 0.93529 1.41819 0.91960 1.24882 0.95147 0.98518 0.95073 1.69901 1.15230 1.21123 1.45687 0.86430 0.80352 0.80924 0.79294 1.20524 1.21054 1.19790 1.19309 0.94936 0.93130 1.12630 1.24167 0.97102 0.91528 0.96177 1.76936 0.98478 1.11000 1.19944 1.48282 1.01209 1.05150 1.64266 1.21738 1.02200 0.75494 1.03011 1.18910 0.88817 0.87503 0.97668 1.66224 1.06312 1.30228 1.18798 0.89795 0.90253 0.89795 0.83460 0.77624 0.95332 0.88950 0.96498 0.92487 0.77536 0.91296 0.89491 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.14 36.01 0.37 -0.48 16 2 C 0.19 2.41 6.78 -82.58 -0.56 1.85 16 3 C -0.19 -2.50 9.22 -39.02 -0.36 -2.85 16 4 C 0.01 0.18 5.93 -104.41 -0.62 -0.44 16 5 C 0.54 10.75 7.76 -12.32 -0.10 10.65 16 6 O -0.54 -12.28 14.80 5.32 0.08 -12.20 16 7 N -0.69 -13.93 5.03 -55.88 -0.28 -14.21 16 8 C 0.26 6.47 2.56 -69.09 -0.18 6.30 16 9 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 10 C -0.15 -3.56 9.26 37.16 0.34 -3.22 16 11 C -0.54 -13.71 8.73 -34.44 -0.30 -14.01 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 14 N -0.88 -24.23 11.32 55.43 0.63 -23.61 16 15 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 16 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 C -0.19 -3.20 6.02 -106.63 -0.64 -3.84 16 20 C 0.11 1.73 11.29 -17.13 -0.19 1.54 16 21 N -0.25 -3.90 12.44 30.79 0.38 -3.52 16 22 N -0.40 -5.71 4.07 -67.19 -0.27 -5.98 16 23 C 0.12 1.10 11.48 59.85 0.69 1.79 16 24 C 0.31 4.87 8.00 -156.06 -1.25 3.62 16 25 N -0.50 -7.10 10.25 -8.59 -0.09 -7.19 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 29 H 0.15 1.61 6.52 -52.49 -0.34 1.27 16 30 H 0.39 6.64 6.68 -40.82 -0.27 6.37 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.21 3.28 7.08 -52.48 -0.37 2.91 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -31.52 326.28 -7.17 -38.69 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -4.61 Total: 5.48 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -2.89 Total: 2.58 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.37 Total: -54.51 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.52 -7.17 -38.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175475442.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.493 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds