Wall clock time and date at job start Tue Mar 31 2020 05:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38696 * 119.16635 * 2 1 4 4 C 1.39298 * 119.36191 * 180.25337 * 3 2 1 5 5 C 1.47873 * 121.08810 * 179.77862 * 4 3 2 6 6 O 1.21541 * 120.00044 * 179.71950 * 5 4 3 7 7 N 1.34777 * 120.00248 * 359.71604 * 5 4 3 8 8 C 1.46497 * 120.00376 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.46725 * 35.00314 * 8 7 5 10 10 C 1.52997 * 109.47188 * 275.00479 * 8 7 5 11 11 C 1.50697 * 109.47081 * 155.00043 * 8 7 5 12 12 H 1.07999 * 120.00055 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99687 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00458 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99926 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47262 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46882 * 119.99668 * 15 13 11 18 18 H 1.48501 * 109.47152 * 239.99726 * 15 13 11 19 19 C 1.41270 * 117.81782 * 359.50516 * 4 3 2 20 20 C 1.41117 * 133.90309 * 180.24804 * 19 4 3 21 21 N 1.30247 * 108.57936 * 179.97438 * 20 19 4 22 22 N 1.39989 * 109.75563 * 0.02562 * 21 20 19 23 23 C 1.46500 * 125.90584 * 180.02562 * 22 21 20 24 24 C 1.37071 * 108.18487 * 359.97438 * 22 21 20 25 25 N 1.31451 * 119.16410 * 179.74825 * 2 1 3 26 26 H 1.09000 * 109.47171 * 270.25231 * 1 2 3 27 27 H 1.09002 * 109.47339 * 30.25308 * 1 2 3 28 28 H 1.09002 * 109.47344 * 150.25154 * 1 2 3 29 29 H 1.08002 * 120.31773 * 0.03209 * 3 2 1 30 30 H 0.97006 * 119.99702 * 0.02562 * 7 5 4 31 31 H 1.09002 * 109.47153 * 299.99573 * 10 8 7 32 32 H 1.09001 * 109.46832 * 179.97438 * 10 8 7 33 33 H 1.09004 * 109.47261 * 59.99745 * 10 8 7 34 34 H 0.96999 * 120.00480 * 179.97438 * 14 13 11 35 35 H 1.08002 * 125.70555 * 359.96378 * 20 19 4 36 36 H 1.08994 * 109.47266 * 269.96151 * 23 22 21 37 37 H 1.08997 * 109.46721 * 29.95996 * 23 22 21 38 38 H 1.08998 * 109.46899 * 149.95922 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1829 1.2111 0.0000 4 6 3.5759 1.2159 -0.0054 5 6 4.3351 2.4848 -0.0105 6 8 5.5503 2.4659 -0.0099 7 7 3.6795 3.6624 -0.0157 8 6 4.4316 4.9195 -0.0202 9 1 5.3410 4.7967 -0.6085 10 6 4.8003 5.2984 1.4155 11 6 3.5849 6.0092 -0.6257 12 1 2.5863 5.7876 -0.9722 13 6 4.0853 7.2892 -0.7374 14 7 5.3011 7.5592 -0.3151 15 14 3.0355 8.6402 -1.4874 16 1 1.7163 8.0822 -1.8791 17 1 2.8380 9.7239 -0.4914 18 1 3.7176 9.1886 -2.6871 19 6 4.2394 -0.0313 0.0002 20 6 5.5967 -0.4176 0.0019 21 7 5.6578 -1.7186 0.0082 22 7 4.3640 -2.2531 0.0104 23 6 4.0230 -3.6779 0.0177 24 6 3.4714 -1.2129 0.0057 25 7 2.1476 -1.1479 0.0050 26 1 -0.3633 0.0045 1.0277 27 1 -0.3634 0.8877 -0.5178 28 1 -0.3634 -0.8922 -0.5099 29 1 1.6345 2.1415 0.0005 30 1 2.7095 3.6775 -0.0158 31 1 3.8909 5.4212 2.0038 32 1 5.3603 6.2335 1.4121 33 1 5.4127 4.5101 1.8535 34 1 5.6532 8.4596 -0.3940 35 1 6.4430 0.2533 -0.0017 36 1 3.9383 -4.0365 -1.0080 37 1 4.8041 -4.2357 0.5343 38 1 3.0730 -3.8214 0.5325 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175475459.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:38 Heat of formation + Delta-G solvation = 65.780181 kcal Electronic energy + Delta-G solvation = -22276.766634 eV Core-core repulsion = 18927.952913 eV Total energy + Delta-G solvation = -3348.813721 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.77273 -39.12070 -38.16044 -34.96729 -33.85950 -32.69276 -31.95940 -31.63280 -28.88581 -27.52285 -26.83601 -25.32249 -24.23178 -22.42430 -21.55545 -20.59426 -19.57516 -17.85149 -17.28932 -16.96415 -16.00427 -15.95479 -15.22287 -14.62568 -14.41897 -14.36899 -14.28305 -13.95812 -13.63449 -13.19936 -12.97285 -12.83902 -12.60152 -12.47524 -12.19206 -11.84229 -11.76814 -11.14609 -11.03161 -11.01358 -10.83658 -10.43430 -10.33702 -10.28921 -9.89986 -9.16913 -9.09113 -8.80939 -8.61620 -8.37301 -8.02677 -6.17294 -4.27019 0.42215 1.12948 2.10139 2.48416 3.21146 3.24139 3.29259 3.31462 3.73463 3.97415 3.98647 4.29975 4.40110 4.70064 4.78017 4.83245 5.06615 5.09637 5.15591 5.29148 5.36097 5.37933 5.43563 5.49513 5.66090 5.82184 5.94888 6.25053 6.48916 6.76728 6.77540 6.89763 7.07506 7.31778 7.41696 7.47091 7.62640 7.82831 7.84252 8.08085 8.50900 8.68689 8.93765 9.40391 10.88735 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.024434 B = 0.003976 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.666936 B = 7040.087431 C = 7911.685221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.195 3.805 3 C -0.186 4.186 4 C 0.011 3.989 5 C 0.540 3.460 6 O -0.538 6.538 7 N -0.693 5.693 8 C 0.263 3.737 9 H 0.053 0.947 10 C -0.148 4.148 11 C -0.535 4.535 12 H 0.063 0.937 13 C 0.067 3.933 14 N -0.882 5.882 15 Si 0.902 3.098 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.189 4.189 20 C 0.106 3.894 21 N -0.250 5.250 22 N -0.398 5.398 23 C 0.117 3.883 24 C 0.311 3.689 25 N -0.499 5.499 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.148 0.852 30 H 0.390 0.610 31 H 0.028 0.972 32 H 0.092 0.908 33 H 0.016 0.984 34 H 0.265 0.735 35 H 0.208 0.792 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.303 -16.332 1.417 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.045 3.955 3 C -0.209 4.209 4 C -0.003 4.003 5 C 0.324 3.676 6 O -0.417 6.417 7 N -0.341 5.341 8 C 0.162 3.838 9 H 0.070 0.930 10 C -0.206 4.206 11 C -0.574 4.574 12 H 0.081 0.919 13 C -0.136 4.136 14 N -0.519 5.519 15 Si 0.730 3.270 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.200 4.200 20 C -0.090 4.090 21 N -0.064 5.064 22 N -0.189 5.189 23 C -0.024 4.024 24 C 0.071 3.929 25 N -0.216 5.216 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.165 0.835 30 H 0.224 0.776 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.225 0.775 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.920 -18.183 1.439 19.508 hybrid contribution -1.045 2.135 -0.383 2.408 sum -7.965 -16.047 1.057 17.947 Atomic orbital electron populations 1.20799 0.87781 1.04008 1.03593 1.21102 0.96671 0.86552 0.91143 1.22019 0.93340 0.99763 1.05759 1.20289 0.93288 0.93042 0.93700 1.18024 0.87484 0.83374 0.78718 1.90704 1.13137 1.87275 1.50564 1.46527 1.10310 1.06595 1.70632 1.18856 0.92708 0.77964 0.94273 0.92965 1.22089 0.99404 1.02037 0.97111 1.21223 1.01130 0.93563 1.41473 0.91902 1.24882 0.95124 0.98526 0.95101 1.69903 1.15312 1.21020 1.45699 0.86382 0.80244 0.81514 0.78892 1.19682 1.20849 1.20846 1.19309 0.94935 0.93130 1.12635 1.24168 0.97101 0.91527 0.96177 1.76936 0.98479 1.10998 1.19950 1.48279 1.01210 1.05152 1.64258 1.21737 1.02189 0.75490 1.03029 1.18910 0.88817 0.87503 0.97671 1.66224 1.06308 1.30232 1.18798 0.89791 0.89796 0.90249 0.83461 0.77622 0.95332 0.88953 0.96497 0.92538 0.77536 0.91282 0.89497 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.14 36.00 0.37 -0.48 16 2 C 0.19 2.41 6.78 -82.59 -0.56 1.86 16 3 C -0.19 -2.50 9.22 -39.02 -0.36 -2.86 16 4 C 0.01 0.18 5.93 -104.41 -0.62 -0.44 16 5 C 0.54 10.75 7.76 -12.32 -0.10 10.65 16 6 O -0.54 -12.28 14.80 5.33 0.08 -12.20 16 7 N -0.69 -13.93 5.03 -55.88 -0.28 -14.21 16 8 C 0.26 6.46 2.56 -69.09 -0.18 6.29 16 9 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 10 C -0.15 -3.56 9.26 37.16 0.34 -3.22 16 11 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 14 N -0.88 -24.22 11.32 55.43 0.63 -23.59 16 15 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 16 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 C -0.19 -3.20 6.02 -106.63 -0.64 -3.84 16 20 C 0.11 1.73 11.29 -17.13 -0.19 1.54 16 21 N -0.25 -3.90 12.44 30.79 0.38 -3.52 16 22 N -0.40 -5.71 4.07 -67.20 -0.27 -5.98 16 23 C 0.12 1.10 11.48 59.85 0.69 1.79 16 24 C 0.31 4.87 8.00 -156.06 -1.25 3.62 16 25 N -0.50 -7.10 10.25 -8.59 -0.09 -7.19 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.15 1.61 6.52 -52.49 -0.34 1.27 16 30 H 0.39 6.64 6.68 -40.82 -0.27 6.37 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 35 H 0.21 3.28 7.08 -52.49 -0.37 2.91 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -31.54 326.28 -7.16 -38.71 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.61 Total: 5.44 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -2.89 Total: 2.58 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.37 Total: -54.49 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.54 -7.16 -38.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175475459.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.486 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds