Wall clock time and date at job start Tue Mar 31 2020 05:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38694 * 119.16659 * 2 1 4 4 C 1.39292 * 119.36530 * 180.02562 * 3 2 1 5 5 C 1.47869 * 121.09323 * 179.97438 * 4 3 2 6 6 O 1.21550 * 119.99850 * 202.44232 * 5 4 3 7 7 N 1.34774 * 119.99806 * 22.44364 * 5 4 3 8 8 C 1.46490 * 120.00053 * 7.05504 * 7 5 4 9 9 C 1.46505 * 119.99646 * 187.05358 * 7 5 4 10 10 C 1.50698 * 109.47071 * 270.00026 * 9 7 5 11 11 H 1.08000 * 120.00175 * 359.97438 * 10 9 7 12 12 C 1.37879 * 119.99732 * 180.02562 * 10 9 7 13 13 N 1.31506 * 120.00222 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99673 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47579 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46917 * 120.00012 * 14 12 10 17 17 H 1.48500 * 109.47133 * 239.99866 * 14 12 10 18 18 C 1.41284 * 117.81784 * 0.26421 * 4 3 2 19 19 C 1.41108 * 133.90068 * 180.44295 * 18 4 3 20 20 N 1.30254 * 108.57997 * 179.51711 * 19 18 4 21 21 N 1.39991 * 109.74962 * 359.74698 * 20 19 18 22 22 C 1.46499 * 125.90333 * 180.02562 * 21 20 19 23 23 C 1.37066 * 108.19049 * 359.97438 * 21 20 19 24 24 N 1.31448 * 119.16333 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.46920 * 90.00266 * 1 2 3 26 26 H 1.08995 * 109.47202 * 210.00425 * 1 2 3 27 27 H 1.09003 * 109.46871 * 330.00049 * 1 2 3 28 28 H 1.08004 * 120.32181 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.47299 * 264.15484 * 8 7 5 30 30 H 1.08999 * 109.47408 * 24.15215 * 8 7 5 31 31 H 1.09001 * 109.47125 * 144.15748 * 8 7 5 32 32 H 1.08998 * 109.47224 * 30.00268 * 9 7 5 33 33 H 1.08996 * 109.46732 * 150.00038 * 9 7 5 34 34 H 0.97002 * 120.00088 * 180.02562 * 13 12 10 35 35 H 1.07997 * 125.71343 * 359.25940 * 19 18 4 36 36 H 1.09000 * 109.47362 * 269.97216 * 22 21 20 37 37 H 1.09005 * 109.47519 * 29.97339 * 22 21 20 38 38 H 1.08999 * 109.47280 * 149.97522 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1829 1.2111 0.0000 4 6 3.5759 1.2159 -0.0005 5 6 4.3351 2.4848 -0.0011 6 8 5.4819 2.5066 -0.4034 7 7 3.7555 3.6170 0.4444 8 6 2.4326 3.5650 1.0715 9 6 4.4486 4.8999 0.3017 10 6 5.2955 5.1518 1.5225 11 1 5.3151 4.4290 2.3247 12 6 6.0444 6.3057 1.6158 13 7 6.0201 7.1862 0.6392 14 14 7.0935 6.6184 3.1293 15 1 6.9480 5.4834 4.0758 16 1 8.5172 6.7471 2.7268 17 1 6.6501 7.8731 3.7884 18 6 4.2395 -0.0313 -0.0068 19 6 5.5967 -0.4176 -0.0014 20 7 5.6579 -1.7187 -0.0016 21 7 4.3640 -2.2531 -0.0013 22 6 4.0230 -3.6779 -0.0009 23 6 3.4714 -1.2130 -0.0003 24 7 2.1476 -1.1478 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6346 2.1416 -0.0004 29 1 1.6687 3.7909 0.3275 30 1 2.2615 2.5676 1.4766 31 1 2.3832 4.2977 1.8769 32 1 5.0851 4.8725 -0.5827 33 1 3.7152 5.6993 0.1969 34 1 6.5473 7.9978 0.7047 35 1 6.4430 0.2532 -0.0016 36 1 3.9378 -4.0314 -1.0284 37 1 4.8043 -4.2384 0.5126 38 1 3.0732 -3.8240 0.5135 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177763306.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:30 Heat of formation + Delta-G solvation = 92.497486 kcal Electronic energy + Delta-G solvation = -22591.881091 eV Core-core repulsion = 19244.225919 eV Total energy + Delta-G solvation = -3347.655171 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.77896 -39.30375 -38.09268 -35.09070 -33.90935 -32.81291 -31.94478 -31.61423 -28.08421 -27.40620 -26.84553 -26.28854 -24.11234 -22.68453 -21.98834 -21.05620 -18.83736 -17.64319 -17.19445 -16.62296 -16.34638 -15.92964 -15.23658 -14.73003 -14.65755 -14.30198 -14.17696 -13.98432 -13.68589 -13.19620 -13.01131 -12.76437 -12.65877 -12.44655 -12.27079 -12.23358 -11.82909 -11.52346 -11.23322 -10.94100 -10.91738 -10.66288 -10.31405 -10.19743 -9.84261 -9.66061 -9.01815 -8.77804 -8.47413 -8.27681 -7.77983 -6.08199 -4.12816 0.47304 1.16457 2.12977 2.50981 3.24967 3.28685 3.36777 3.40901 3.64839 3.95206 3.99597 4.38203 4.44322 4.56077 4.79663 4.85319 5.07789 5.08868 5.25595 5.29853 5.31658 5.39159 5.41884 5.45148 5.55994 5.60328 5.75127 5.82419 5.98627 6.13971 6.26614 6.51120 6.80284 6.95083 7.32884 7.41020 7.44908 7.85860 7.87629 8.16634 8.22722 8.77775 8.94571 9.52392 11.00036 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.020683 B = 0.004523 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.471933 B = 6189.346438 C = 7088.037768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.191 3.809 3 C -0.203 4.203 4 C 0.012 3.988 5 C 0.541 3.459 6 O -0.521 6.521 7 N -0.587 5.587 8 C 0.066 3.934 9 C 0.246 3.754 10 C -0.526 4.526 11 H 0.059 0.941 12 C 0.062 3.938 13 N -0.894 5.894 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.283 1.283 18 C -0.189 4.189 19 C 0.105 3.895 20 N -0.249 5.249 21 N -0.398 5.398 22 C 0.117 3.883 23 C 0.311 3.689 24 N -0.500 5.500 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.165 0.835 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.037 0.963 34 H 0.263 0.737 35 H 0.206 0.794 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.077 -15.791 -0.752 19.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.041 3.959 3 C -0.225 4.225 4 C -0.002 4.002 5 C 0.327 3.673 6 O -0.398 6.398 7 N -0.318 5.318 8 C -0.077 4.077 9 C 0.127 3.873 10 C -0.565 4.565 11 H 0.077 0.923 12 C -0.140 4.140 13 N -0.533 5.533 14 Si 0.726 3.274 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.210 1.210 18 C -0.200 4.200 19 C -0.090 4.090 20 N -0.063 5.063 21 N -0.189 5.189 22 C -0.024 4.024 23 C 0.071 3.929 24 N -0.216 5.216 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.101 0.899 28 H 0.182 0.818 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.223 0.777 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.021 -17.608 -1.016 20.798 hybrid contribution 0.538 1.625 0.817 1.897 sum -10.482 -15.983 -0.198 19.115 Atomic orbital electron populations 1.20779 0.87853 1.03903 1.03524 1.21145 0.96627 0.86628 0.91467 1.22760 0.93669 1.00577 1.05518 1.20241 0.93426 0.92976 0.93571 1.17991 0.86343 0.82846 0.80151 1.90753 1.16332 1.85159 1.47576 1.48080 1.18296 1.08877 1.56579 1.22262 0.84575 1.02875 0.97990 1.19389 0.92329 0.77147 0.98446 1.21435 1.26852 1.04640 1.03570 0.92281 1.24921 0.96581 0.95858 0.96649 1.69931 1.41261 1.10238 1.31907 0.86438 0.80282 0.77984 0.82703 1.19781 1.20822 1.20952 1.19307 0.94895 0.93168 1.12608 1.24113 0.97060 0.91625 0.96246 1.76937 0.98465 1.10924 1.19945 1.48271 1.01201 1.05137 1.64290 1.21731 1.02175 0.75525 1.02988 1.18886 0.88803 0.87448 0.97787 1.66200 1.06288 1.30345 1.18813 0.89881 0.90282 0.89891 0.81813 0.92815 0.90898 0.90613 0.93659 0.94505 0.92705 0.77737 0.91320 0.89513 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.14 36.01 0.37 -0.43 16 2 C 0.19 2.35 6.78 -82.59 -0.56 1.79 16 3 C -0.20 -2.73 7.28 -39.02 -0.28 -3.02 16 4 C 0.01 0.21 5.56 -104.41 -0.58 -0.37 16 5 C 0.54 11.34 7.52 -12.32 -0.09 11.24 16 6 O -0.52 -12.78 15.23 5.32 0.08 -12.70 16 7 N -0.59 -12.07 2.86 -184.08 -0.53 -12.60 16 8 C 0.07 0.99 8.70 59.84 0.52 1.51 16 9 C 0.25 6.20 5.14 -5.19 -0.03 6.17 16 10 C -0.53 -14.60 9.39 -34.44 -0.32 -14.93 16 11 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 12 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 14 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C -0.19 -3.30 5.99 -106.63 -0.64 -3.94 16 19 C 0.11 1.80 11.37 -17.13 -0.19 1.60 16 20 N -0.25 -4.03 12.44 30.79 0.38 -3.65 16 21 N -0.40 -5.86 4.07 -67.19 -0.27 -6.13 16 22 C 0.12 1.14 11.48 59.85 0.69 1.82 16 23 C 0.31 4.96 8.00 -156.07 -1.25 3.71 16 24 N -0.50 -7.16 10.25 -8.59 -0.09 -7.25 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 28 H 0.16 1.82 4.44 -52.48 -0.23 1.58 16 29 H 0.05 0.64 7.13 -51.93 -0.37 0.27 16 30 H 0.07 0.95 5.19 -51.93 -0.27 0.68 16 31 H 0.08 1.15 8.11 -51.93 -0.42 0.73 16 32 H 0.05 1.28 7.53 -51.93 -0.39 0.89 16 33 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.21 3.44 7.36 -52.49 -0.39 3.06 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 324.52 15.07 4.89 4.89 Total: -1.00 -34.31 324.52 -6.86 -41.17 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -4.57 Total: -1.82 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -2.47 Total: 6.81 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.23 Total: -54.95 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.08 Total: -12.70 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.31 -6.86 -41.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177763306.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.667 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds