Wall clock time and date at job start Tue Mar 31 2020 05:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38694 * 119.16659 * 2 1 4 4 C 1.39292 * 119.36530 * 180.02562 * 3 2 1 5 5 C 1.47869 * 121.09323 * 179.97438 * 4 3 2 6 6 O 1.21550 * 119.99850 * 202.44232 * 5 4 3 7 7 N 1.34774 * 119.99806 * 22.44364 * 5 4 3 8 8 C 1.46490 * 120.00053 * 7.05504 * 7 5 4 9 9 C 1.46505 * 119.99646 * 187.05358 * 7 5 4 10 10 C 1.50698 * 109.47071 * 270.00026 * 9 7 5 11 11 H 1.08000 * 120.00175 * 359.97438 * 10 9 7 12 12 C 1.37879 * 119.99732 * 180.02562 * 10 9 7 13 13 N 1.31506 * 120.00222 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99673 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47579 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46917 * 120.00012 * 14 12 10 17 17 H 1.48500 * 109.47133 * 239.99866 * 14 12 10 18 18 C 1.41284 * 117.81784 * 0.26421 * 4 3 2 19 19 C 1.41108 * 133.90068 * 180.44295 * 18 4 3 20 20 N 1.30254 * 108.57997 * 179.51711 * 19 18 4 21 21 N 1.39991 * 109.74962 * 359.74698 * 20 19 18 22 22 C 1.46499 * 125.90333 * 180.02562 * 21 20 19 23 23 C 1.37066 * 108.19049 * 359.97438 * 21 20 19 24 24 N 1.31448 * 119.16333 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.46920 * 90.00266 * 1 2 3 26 26 H 1.08995 * 109.47202 * 210.00425 * 1 2 3 27 27 H 1.09003 * 109.46871 * 330.00049 * 1 2 3 28 28 H 1.08004 * 120.32181 * 359.97438 * 3 2 1 29 29 H 1.09003 * 109.47299 * 264.15484 * 8 7 5 30 30 H 1.08999 * 109.47408 * 24.15215 * 8 7 5 31 31 H 1.09001 * 109.47125 * 144.15748 * 8 7 5 32 32 H 1.08998 * 109.47224 * 30.00268 * 9 7 5 33 33 H 1.08996 * 109.46732 * 150.00038 * 9 7 5 34 34 H 0.97002 * 120.00088 * 180.02562 * 13 12 10 35 35 H 1.07997 * 125.71343 * 359.25940 * 19 18 4 36 36 H 1.09000 * 109.47362 * 269.97216 * 22 21 20 37 37 H 1.09005 * 109.47519 * 29.97339 * 22 21 20 38 38 H 1.08999 * 109.47280 * 149.97522 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1829 1.2111 0.0000 4 6 3.5759 1.2159 -0.0005 5 6 4.3351 2.4848 -0.0011 6 8 5.4819 2.5066 -0.4034 7 7 3.7555 3.6170 0.4444 8 6 2.4326 3.5650 1.0715 9 6 4.4486 4.8999 0.3017 10 6 5.2955 5.1518 1.5225 11 1 5.3151 4.4290 2.3247 12 6 6.0444 6.3057 1.6158 13 7 6.0201 7.1862 0.6392 14 14 7.0935 6.6184 3.1293 15 1 6.9480 5.4834 4.0758 16 1 8.5172 6.7471 2.7268 17 1 6.6501 7.8731 3.7884 18 6 4.2395 -0.0313 -0.0068 19 6 5.5967 -0.4176 -0.0014 20 7 5.6579 -1.7187 -0.0016 21 7 4.3640 -2.2531 -0.0013 22 6 4.0230 -3.6779 -0.0009 23 6 3.4714 -1.2130 -0.0003 24 7 2.1476 -1.1478 -0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6346 2.1416 -0.0004 29 1 1.6687 3.7909 0.3275 30 1 2.2615 2.5676 1.4766 31 1 2.3832 4.2977 1.8769 32 1 5.0851 4.8725 -0.5827 33 1 3.7152 5.6993 0.1969 34 1 6.5473 7.9978 0.7047 35 1 6.4430 0.2532 -0.0016 36 1 3.9378 -4.0314 -1.0284 37 1 4.8043 -4.2384 0.5126 38 1 3.0732 -3.8240 0.5135 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177763306.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:30 Heat of formation + Delta-G solvation = 69.355871 kcal Electronic energy + Delta-G solvation = -22592.884586 eV Core-core repulsion = 19244.225919 eV Total energy + Delta-G solvation = -3348.658667 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.95469 -40.79130 -39.31197 -36.77746 -35.18781 -34.66274 -33.01462 -32.81129 -29.80121 -28.43092 -28.04707 -27.55582 -25.79839 -24.09479 -23.22251 -22.32884 -20.27459 -18.80428 -18.71788 -18.41931 -17.72350 -17.10959 -16.96060 -16.17642 -16.09437 -15.79302 -15.41123 -14.96878 -14.84753 -14.54448 -14.33604 -13.96029 -13.83096 -13.67073 -13.48853 -13.28659 -12.97804 -12.90445 -12.79288 -12.65850 -12.50244 -12.22967 -12.10734 -11.71450 -11.50077 -11.23967 -10.63769 -10.42803 -9.92437 -9.49378 -9.39929 -8.22390 -6.35888 -0.74782 0.04002 1.08932 1.23055 1.36954 1.39810 1.50943 1.83740 2.13466 2.40417 2.66854 2.99587 3.08015 3.21624 3.42114 3.66570 3.72332 4.09555 4.24149 4.32327 4.37247 4.38138 4.46532 4.62150 4.63397 4.77887 4.87902 4.92734 4.96386 5.01488 5.08819 5.20714 5.24317 5.46640 5.53617 5.78330 5.79218 6.05191 6.25247 6.59542 6.72348 6.75206 7.19214 7.36821 8.84911 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.020683 B = 0.004523 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.471933 B = 6189.346438 C = 7088.037768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.199 3.801 3 C -0.182 4.182 4 C -0.012 4.012 5 C 0.536 3.464 6 O -0.574 6.574 7 N -0.592 5.592 8 C 0.058 3.942 9 C 0.260 3.740 10 C -0.542 4.542 11 H 0.050 0.950 12 C 0.012 3.988 13 N -0.925 5.925 14 Si 0.964 3.036 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.267 1.267 18 C -0.218 4.218 19 C 0.083 3.917 20 N -0.255 5.255 21 N -0.394 5.394 22 C 0.107 3.893 23 C 0.300 3.700 24 N -0.497 5.497 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.112 0.888 28 H 0.193 0.807 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.002 0.998 33 H 0.037 0.963 34 H 0.268 0.732 35 H 0.193 0.807 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.119 -16.982 0.273 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.049 3.951 3 C -0.203 4.203 4 C -0.026 4.026 5 C 0.324 3.676 6 O -0.455 6.455 7 N -0.322 5.322 8 C -0.083 4.083 9 C 0.139 3.861 10 C -0.580 4.580 11 H 0.068 0.932 12 C -0.187 4.187 13 N -0.565 5.565 14 Si 0.788 3.212 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.192 1.192 18 C -0.229 4.229 19 C -0.111 4.111 20 N -0.070 5.070 21 N -0.185 5.185 22 C -0.032 4.032 23 C 0.060 3.940 24 N -0.214 5.214 25 H 0.120 0.880 26 H 0.106 0.894 27 H 0.130 0.870 28 H 0.210 0.790 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.209 0.791 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.101 -18.830 0.026 23.524 hybrid contribution 1.357 1.918 0.458 2.394 sum -12.744 -16.912 0.484 21.181 Atomic orbital electron populations 1.20999 0.83754 1.05853 1.05218 1.22017 0.98863 0.85422 0.88836 1.23124 0.91902 1.02463 1.02825 1.19933 0.94803 0.90779 0.97091 1.18596 0.86042 0.84030 0.78978 1.90709 1.18838 1.86128 1.49797 1.48045 1.20101 1.07217 1.56875 1.22641 0.82442 1.04316 0.98894 1.18880 0.91868 0.79501 0.95836 1.21682 1.27670 1.04586 1.04075 0.93195 1.25760 0.97692 0.95646 0.99607 1.70030 1.42087 1.10735 1.33663 0.85429 0.78262 0.78343 0.79133 1.19537 1.20851 1.19236 1.19498 0.95141 0.94114 1.14121 1.23967 0.97238 0.92051 0.97873 1.76845 0.99800 1.10463 1.19919 1.48673 1.00384 1.06551 1.62883 1.22137 1.03515 0.73047 1.04546 1.19071 0.89450 0.87190 0.98278 1.66405 1.05115 1.31216 1.18683 0.88008 0.89391 0.86963 0.79022 0.88752 0.88570 0.90959 0.97950 0.94470 0.92347 0.79063 0.89738 0.87929 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.01 10.14 71.24 0.72 -0.29 16 2 C 0.20 4.15 6.78 42.73 0.29 4.44 16 3 C -0.18 -4.36 7.28 22.63 0.16 -4.20 16 4 C -0.01 -0.42 5.56 -19.73 -0.11 -0.53 16 5 C 0.54 23.26 7.52 86.79 0.65 23.91 16 6 O -0.57 -30.20 15.23 -3.87 -0.06 -30.26 16 7 N -0.59 -24.63 2.86 -854.57 -2.44 -27.07 16 8 C 0.06 1.59 8.70 127.77 1.11 2.71 16 9 C 0.26 13.61 5.14 85.63 0.44 14.05 16 10 C -0.54 -30.88 9.39 25.60 0.24 -30.64 16 11 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 12 C 0.01 0.70 5.46 84.66 0.46 1.16 16 13 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 14 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 16 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 18 C -0.22 -7.76 5.99 -21.17 -0.13 -7.89 16 19 C 0.08 3.03 11.37 85.63 0.97 4.00 16 20 N -0.26 -8.48 12.44 -56.50 -0.70 -9.18 16 21 N -0.39 -11.27 4.07 -366.49 -1.49 -12.76 16 22 C 0.11 1.86 11.48 127.77 1.47 3.32 16 23 C 0.30 9.28 8.00 134.11 1.07 10.36 16 24 N -0.50 -12.90 10.25 -181.10 -1.86 -14.76 16 25 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 27 H 0.11 0.54 8.07 -2.39 -0.02 0.52 16 28 H 0.19 3.39 4.44 -2.91 -0.01 3.37 16 29 H 0.09 1.85 7.13 -2.39 -0.02 1.83 16 30 H 0.10 2.19 5.19 -2.39 -0.01 2.18 16 31 H 0.07 2.06 8.11 -2.39 -0.02 2.04 16 32 H 0.00 0.14 7.53 -2.39 -0.02 0.13 16 33 H 0.04 1.92 8.07 -2.39 -0.02 1.90 16 34 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.19 7.23 7.36 -2.91 -0.02 7.21 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -78.93 324.52 4.21 -74.72 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 1.09 Total: 6.76 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 7.36 Total: 20.41 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -6.21 Total: -118.47 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.06 Total: -30.26 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -78.93 4.21 -74.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177763306.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.078 kcal (2) G-P(sol) polarization free energy of solvation -78.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds