Wall clock time and date at job start Tue Mar 31 2020 05:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35516 * 120.17820 * 2 1 4 4 C 1.40255 * 121.65970 * 179.97438 * 3 2 1 5 5 N 1.39923 * 119.17268 * 180.02562 * 4 3 2 6 6 C 1.34782 * 120.00100 * 324.61877 * 5 4 3 7 7 O 1.21588 * 119.99567 * 4.41897 * 6 5 4 8 8 N 1.34769 * 120.00131 * 184.41252 * 6 5 4 9 9 C 1.46497 * 120.00261 * 0.02562 * 8 6 5 10 10 C 1.46500 * 120.00259 * 180.02562 * 8 6 5 11 11 C 1.50709 * 109.47093 * 89.99630 * 10 8 6 12 12 H 1.07995 * 119.99772 * 0.02562 * 11 10 8 13 13 C 1.37878 * 119.99867 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00028 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99873 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47440 * 59.99723 * 15 13 11 17 17 H 1.48495 * 109.47148 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46924 * 300.00004 * 15 13 11 19 19 C 1.36251 * 121.65515 * 359.97430 * 4 3 2 20 20 C 1.41082 * 119.55080 * 0.02702 * 19 4 3 21 21 N 1.32088 * 134.61043 * 179.97438 * 20 19 4 22 22 N 1.39957 * 108.94801 * 180.02562 * 21 20 19 23 23 H 0.96997 * 125.02072 * 180.02562 * 22 21 20 24 24 C 1.33992 * 109.95730 * 0.25898 * 22 21 20 25 25 C 1.38247 * 107.91700 * 359.58418 * 24 22 21 26 26 H 1.08998 * 109.47064 * 89.99844 * 1 2 3 27 27 H 1.09003 * 109.47239 * 209.99908 * 1 2 3 28 28 H 1.09002 * 109.47319 * 329.99871 * 1 2 3 29 29 H 1.07995 * 119.17492 * 0.02562 * 3 2 1 30 30 H 0.97005 * 120.00624 * 144.62266 * 5 4 3 31 31 H 1.09001 * 109.47225 * 89.99723 * 9 8 6 32 32 H 1.09003 * 109.47096 * 210.00193 * 9 8 6 33 33 H 1.09000 * 109.47009 * 329.99886 * 9 8 6 34 34 H 1.08996 * 109.47829 * 210.00307 * 10 8 6 35 35 H 1.08999 * 109.46770 * 330.00643 * 10 8 6 36 36 H 0.96999 * 120.00115 * 180.02562 * 14 13 11 37 37 H 1.07997 * 120.22285 * 179.97438 * 19 4 3 38 38 H 1.07998 * 126.04040 * 179.73270 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1882 1.1715 0.0000 4 6 3.5903 1.2077 0.0005 5 7 4.2405 2.4467 0.0011 6 6 3.7113 3.4859 -0.6748 7 8 2.6296 3.3702 -1.2178 8 7 4.3810 4.6531 -0.7485 9 6 5.6845 4.7923 -0.0945 10 6 3.8055 5.7827 -1.4826 11 6 2.9653 6.6138 -0.5474 12 1 2.8699 6.3292 0.4900 13 6 2.3184 7.7375 -1.0163 14 7 2.4341 8.0838 -2.2798 15 14 1.2775 8.7680 0.1429 16 1 2.1264 9.2783 1.2493 17 1 0.6941 9.9130 -0.6012 18 1 0.1849 7.9323 0.7024 19 6 4.3351 0.0668 0.0016 20 6 3.6878 -1.1867 0.0016 21 7 4.0976 -2.4424 0.0020 22 7 2.9802 -3.2852 0.0012 23 1 3.0142 -4.2545 0.0016 24 6 1.8567 -2.5551 -0.0055 25 6 2.2168 -1.2203 0.0004 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5139 29 1 1.6377 2.1006 0.0004 30 1 5.0723 2.5579 0.4877 31 1 6.4727 4.5058 -0.7907 32 1 5.8287 5.8285 0.2113 33 1 5.7218 4.1461 0.7825 34 1 4.6077 6.3962 -1.8926 35 1 3.1826 5.4086 -2.2950 36 1 1.9793 8.8745 -2.6096 37 1 5.4137 0.1217 0.0016 38 1 0.8481 -2.9411 -0.0117 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334165302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:38 Heat of formation + Delta-G solvation = 76.061032 kcal Electronic energy + Delta-G solvation = -22166.504328 eV Core-core repulsion = 18818.136418 eV Total energy + Delta-G solvation = -3348.367910 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26594 -39.87961 -37.32777 -34.89221 -34.47601 -32.79259 -32.37603 -29.86173 -29.17402 -27.68536 -26.88104 -25.84660 -23.71602 -22.66007 -21.62820 -20.02457 -19.22658 -18.45595 -17.30203 -17.05414 -16.48014 -15.96849 -15.11025 -14.93513 -14.78328 -14.34262 -14.19901 -13.75193 -13.30044 -13.12218 -13.08573 -12.76513 -12.48700 -12.17733 -12.01749 -11.80379 -11.65656 -11.43325 -11.17935 -10.91035 -10.55418 -10.30301 -10.14594 -10.04214 -9.76401 -9.63604 -9.19484 -8.42034 -8.04943 -7.64023 -7.38737 -6.02873 -4.07778 0.67965 1.95452 2.47942 2.65354 3.21741 3.33213 3.37611 3.41245 3.72409 4.10898 4.36613 4.40661 4.53135 4.66514 5.05151 5.24209 5.28132 5.31349 5.51175 5.54549 5.57380 5.72305 5.80545 5.87095 6.01559 6.13269 6.17206 6.43178 6.51404 6.63836 6.87143 6.87940 7.04490 7.25933 7.36510 7.51071 7.62534 7.68553 7.94899 8.24001 8.57916 8.92806 9.23930 9.57532 11.04982 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.025759 B = 0.003749 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.720556 B = 7467.212168 C = 8207.007211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.008 4.008 3 C -0.144 4.144 4 C 0.244 3.756 5 N -0.697 5.697 6 C 0.698 3.302 7 O -0.565 6.565 8 N -0.612 5.612 9 C 0.083 3.917 10 C 0.260 3.740 11 C -0.528 4.528 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.178 4.178 20 C 0.134 3.866 21 N -0.321 5.321 22 N -0.436 5.436 23 H 0.440 0.560 24 C 0.080 3.920 25 C -0.209 4.209 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.149 0.851 30 H 0.403 0.597 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.264 0.736 37 H 0.127 0.873 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 -19.489 6.280 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.011 4.011 3 C -0.165 4.165 4 C 0.143 3.857 5 N -0.346 5.346 6 C 0.400 3.600 7 O -0.441 6.441 8 N -0.347 5.347 9 C -0.061 4.061 10 C 0.140 3.860 11 C -0.567 4.567 12 H 0.075 0.925 13 C -0.141 4.141 14 N -0.534 5.534 15 Si 0.726 3.274 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.204 4.204 20 C -0.020 4.020 21 N -0.150 5.150 22 N -0.137 5.137 23 H 0.283 0.717 24 C -0.076 4.076 25 C -0.219 4.219 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.167 0.833 30 H 0.240 0.760 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.145 0.855 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.680 -20.049 5.693 20.909 hybrid contribution -0.703 0.698 0.859 1.311 sum 0.977 -19.351 6.552 20.453 Atomic orbital electron populations 1.20782 0.90981 1.02605 1.02580 1.18885 0.95238 0.90142 0.96858 1.20832 0.92710 0.99126 1.03805 1.16990 0.91376 0.83729 0.93601 1.43092 1.28092 1.09091 1.54343 1.15912 0.84196 0.80071 0.79814 1.90888 1.20262 1.82086 1.50817 1.47516 1.19571 1.12107 1.55482 1.21608 0.85369 1.03196 0.95963 1.19257 0.93823 0.81016 0.91865 1.21424 1.29863 1.09118 0.96281 0.92478 1.24924 0.96450 0.97461 0.95216 1.69921 1.43585 1.26137 1.13751 0.86555 0.80650 0.79533 0.80646 1.20298 1.21205 1.20162 1.19196 0.98991 0.87468 1.14750 1.20448 0.92198 0.91943 0.97459 1.77646 1.05192 0.99913 1.32209 1.46194 1.03943 1.09715 1.53810 0.71684 1.22573 0.92608 0.91381 1.01044 1.19507 0.93626 0.92609 1.16182 0.90786 0.91984 0.90950 0.83339 0.75978 0.93549 0.90241 0.93104 0.94745 0.93595 0.92645 0.85492 0.79968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.95 36.01 0.36 -0.89 16 2 C -0.01 -0.12 5.89 -104.48 -0.62 -0.73 16 3 C -0.14 -2.47 8.16 -39.80 -0.32 -2.80 16 4 C 0.24 4.05 6.23 -84.12 -0.52 3.52 16 5 N -0.70 -11.57 5.18 -14.50 -0.08 -11.64 16 6 C 0.70 14.88 8.10 -86.92 -0.70 14.17 16 7 O -0.56 -14.22 13.29 5.29 0.07 -14.15 16 8 N -0.61 -12.95 2.86 -188.74 -0.54 -13.49 16 9 C 0.08 1.28 10.24 59.85 0.61 1.89 16 10 C 0.26 6.75 5.16 -5.19 -0.03 6.72 16 11 C -0.53 -14.84 9.39 -34.44 -0.32 -15.16 16 12 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.90 -26.44 13.29 55.43 0.74 -25.71 16 15 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 C -0.18 -2.69 9.95 -39.22 -0.39 -3.08 16 20 C 0.13 2.02 7.49 -83.07 -0.62 1.40 16 21 N -0.32 -4.47 12.70 33.24 0.42 -4.05 16 22 N -0.44 -4.14 7.18 30.84 0.22 -3.92 16 23 H 0.44 2.30 8.96 -182.71 -1.64 0.66 16 24 C 0.08 0.75 11.78 -16.61 -0.20 0.56 16 25 C -0.21 -2.82 6.12 -105.17 -0.64 -3.46 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.51 7.93 -51.93 -0.41 0.10 16 28 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 29 H 0.15 2.92 6.13 -52.49 -0.32 2.59 16 30 H 0.40 5.30 6.50 -40.82 -0.27 5.04 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 33 H 0.05 0.62 6.30 -51.93 -0.33 0.30 16 34 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 35 H 0.05 1.35 7.42 -51.93 -0.39 0.96 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 325.28 15.07 4.90 4.90 Total: -1.00 -35.88 325.28 -8.62 -44.50 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.84 Total: 3.07 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -3.50 Total: 3.79 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.77 Total: -58.81 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.07 Total: -14.15 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.88 -8.62 -44.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334165302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.564 kcal (2) G-P(sol) polarization free energy of solvation -35.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds