Wall clock time and date at job start Tue Mar 31 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.88284 * 325.70211 * 10 9 7 12 12 C 1.55158 * 111.00749 * 89.57767 * 10 9 7 13 13 C 1.54321 * 102.94226 * 153.58074 * 12 10 9 14 14 N 1.47024 * 107.27087 * 337.80562 * 13 12 10 15 15 C 1.34777 * 125.64465 * 178.99933 * 14 13 12 16 16 O 1.21283 * 119.99696 * 179.97438 * 15 14 13 17 17 C 1.50699 * 120.00203 * 359.97438 * 15 14 13 18 18 C 1.53005 * 109.47105 * 180.02562 * 17 15 14 19 19 C 1.53783 * 113.61358 * 274.13822 * 18 17 15 20 20 C 1.53948 * 87.01749 * 220.04891 * 19 18 17 21 21 F 1.39901 * 113.53719 * 270.81174 * 20 19 18 22 22 F 1.39895 * 113.66902 * 139.93479 * 20 19 18 23 23 C 1.53775 * 113.61293 * 176.53030 * 18 17 15 24 24 C 1.47464 * 108.72409 * 358.97781 * 14 13 12 25 25 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 26 26 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 27 27 H 1.09008 * 110.71927 * 271.94536 * 12 10 9 28 28 H 1.08997 * 110.72100 * 35.21365 * 12 10 9 29 29 H 1.08996 * 109.88467 * 97.22506 * 13 12 10 30 30 H 1.09000 * 109.87825 * 218.38992 * 13 12 10 31 31 H 1.09004 * 109.47394 * 300.00082 * 17 15 14 32 32 H 1.08996 * 109.47083 * 60.00422 * 17 15 14 33 33 H 1.09001 * 112.84693 * 45.33316 * 18 17 15 34 34 H 1.09002 * 113.60972 * 334.56520 * 19 18 17 35 35 H 1.08997 * 113.61097 * 105.47036 * 19 18 17 36 36 H 1.09001 * 113.61780 * 254.52484 * 23 18 17 37 37 H 1.08999 * 113.61832 * 25.43096 * 23 18 17 38 38 H 1.09002 * 110.35058 * 265.25204 * 24 14 13 39 39 H 1.08994 * 110.40482 * 142.91083 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5777 -3.2281 0.5746 12 6 4.3817 -2.9574 -1.4473 13 6 5.6529 -3.8184 -1.2918 14 7 6.3275 -3.3823 -0.0604 15 6 7.4664 -3.9030 0.4379 16 8 7.9356 -3.4625 1.4659 17 6 8.1568 -5.0326 -0.2822 18 6 9.4160 -5.4346 0.4882 19 6 10.6530 -4.5949 0.1279 20 6 11.4622 -5.9025 0.2007 21 9 11.9632 -6.1792 1.4773 22 9 12.4311 -6.0199 -0.8016 23 6 10.1516 -6.6403 -0.1199 24 6 5.5524 -2.2804 0.5392 25 1 -0.4850 0.8401 0.0004 26 1 3.8646 -0.3620 0.0007 27 1 3.5500 -3.5600 -1.8127 28 1 4.5671 -2.1121 -2.1100 29 1 5.3804 -4.8708 -1.2124 30 1 6.3101 -3.6671 -2.1481 31 1 7.4832 -5.8871 -0.3480 32 1 8.4323 -4.7090 -1.2859 33 1 9.2456 -5.5228 1.5612 34 1 10.6110 -4.1625 -0.8718 35 1 10.9256 -3.8684 0.8934 36 1 10.0202 -7.5627 0.4458 37 1 9.9724 -6.7681 -1.1874 38 1 5.9524 -1.3180 0.2201 39 1 5.5640 -2.3553 1.6265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019057321.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:56 Heat of formation + Delta-G solvation = -99.731660 kcal Electronic energy + Delta-G solvation = -22672.180945 eV Core-core repulsion = 18865.500906 eV Total energy + Delta-G solvation = -3806.680039 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.08070 -47.42221 -40.18831 -38.46302 -37.16340 -34.34389 -31.84881 -30.60302 -29.78276 -27.94706 -26.61872 -24.30339 -22.97886 -22.60666 -20.35775 -20.25208 -19.23022 -17.83432 -17.63532 -17.13336 -16.85318 -16.54403 -16.19610 -15.78492 -14.76692 -14.55474 -14.29327 -14.08671 -13.93139 -13.71927 -13.57813 -13.38446 -12.94855 -12.88792 -12.62074 -12.55434 -12.12519 -11.92727 -11.63759 -11.52523 -11.46372 -11.22336 -10.95303 -10.78362 -10.74430 -10.52848 -10.14539 -9.83099 -9.68945 -9.04439 -8.57880 -7.41696 -5.87267 -3.25331 2.61190 2.93976 3.16741 3.31353 3.34759 3.40286 3.46339 3.91459 3.99571 4.02542 4.50112 4.52286 4.80696 4.84542 4.94493 5.03003 5.06525 5.11279 5.17310 5.22818 5.31299 5.35458 5.43968 5.47378 5.48481 5.58783 5.79704 5.80540 5.91809 6.05318 6.19132 6.36852 6.45969 6.71386 7.56702 7.86153 8.15243 8.31033 9.07436 9.79823 9.97667 11.30362 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.042740 B = 0.002791 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.964894 B =10028.472503 C =10246.239079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.277 1.277 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.092 0.908 9 N -0.738 5.738 10 C 0.177 3.823 11 H 0.074 0.926 12 C -0.155 4.155 13 C 0.100 3.900 14 N -0.614 5.614 15 C 0.525 3.475 16 O -0.544 6.544 17 C -0.124 4.124 18 C -0.088 4.088 19 C -0.158 4.158 20 C 0.251 3.749 21 F -0.180 7.180 22 F -0.194 7.194 23 C -0.161 4.161 24 C 0.095 3.905 25 H 0.261 0.739 26 H 0.364 0.636 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.065 0.935 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.219 -13.475 -3.930 24.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.187 4.187 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.203 1.203 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.380 5.380 10 C 0.065 3.935 11 H 0.092 0.908 12 C -0.196 4.196 13 C -0.023 4.023 14 N -0.348 5.348 15 C 0.313 3.687 16 O -0.422 6.422 17 C -0.164 4.164 18 C -0.106 4.106 19 C -0.196 4.196 20 C 0.215 3.785 21 F -0.161 7.161 22 F -0.174 7.174 23 C -0.199 4.199 24 C -0.028 4.028 25 H 0.071 0.929 26 H 0.197 0.803 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.083 0.917 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 20.301 -13.325 -3.330 24.511 hybrid contribution 0.693 1.187 -0.157 1.383 sum 20.995 -12.139 -3.486 24.501 Atomic orbital electron populations 1.69697 1.05129 1.26053 1.56766 1.24676 0.95238 0.97297 1.01530 0.86569 0.79188 0.84891 0.77963 1.20883 1.20280 1.21606 1.19025 0.80137 0.94864 1.43984 0.88997 1.42608 1.04166 1.01498 1.89743 1.21270 0.89271 0.90034 0.92912 0.90825 1.23392 0.95119 0.99562 1.01573 1.22130 0.94904 0.99101 0.86177 1.48490 1.24075 1.36238 1.26041 1.20197 0.79630 0.83764 0.85069 1.90709 1.64636 1.62351 1.24462 1.21577 0.96922 0.97937 0.99962 1.22167 0.92541 0.94146 1.01782 1.24199 0.94112 0.96012 1.05293 1.22158 0.83454 1.00345 0.72542 1.93022 1.89233 1.94724 1.39093 1.93004 1.67431 1.96897 1.60100 1.24183 0.91690 0.99718 1.04353 1.22576 0.91983 0.89242 0.99032 0.92873 0.80317 0.90172 0.90661 0.91565 0.91893 0.88082 0.88495 0.86752 0.87185 0.88421 0.88626 0.86842 0.91680 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.27 13.97 55.49 0.78 -27.49 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 21.34 27.74 -169.99 -4.71 16.62 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.25 -6.69 10.46 -15.06 -0.16 -6.85 16 8 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 9 N -0.74 -16.35 5.07 -51.35 -0.26 -16.61 16 10 C 0.18 3.09 3.70 -65.78 -0.24 2.85 16 11 H 0.07 1.34 8.11 -51.93 -0.42 0.92 16 12 C -0.16 -2.23 6.65 -24.90 -0.17 -2.40 16 13 C 0.10 1.09 6.49 -3.06 -0.02 1.07 16 14 N -0.61 -8.10 3.33 -170.49 -0.57 -8.67 16 15 C 0.52 6.72 7.85 -10.99 -0.09 6.63 16 16 O -0.54 -8.97 16.05 5.55 0.09 -8.88 16 17 C -0.12 -0.98 4.72 -27.88 -0.13 -1.12 16 18 C -0.09 -0.71 3.09 -89.81 -0.28 -0.99 16 19 C -0.16 -1.33 7.43 -25.83 -0.19 -1.52 16 20 C 0.25 2.23 3.28 -25.83 -0.08 2.15 16 21 F -0.18 -1.95 17.38 2.25 0.04 -1.91 16 22 F -0.19 -1.95 17.41 2.25 0.04 -1.91 16 23 C -0.16 -1.03 7.43 -25.92 -0.19 -1.22 16 24 C 0.09 1.50 6.54 -2.51 -0.02 1.49 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.36 7.98 5.60 -40.82 -0.23 7.75 16 27 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.59 7.88 -51.93 -0.41 0.18 16 33 H 0.11 1.12 7.73 -51.93 -0.40 0.72 16 34 H 0.11 0.77 7.92 -51.93 -0.41 0.36 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.11 0.52 8.10 -51.93 -0.42 0.10 16 38 H 0.06 1.05 8.00 -51.93 -0.42 0.63 16 39 H 0.08 1.32 8.04 -51.93 -0.42 0.91 16 LS Contribution 329.52 15.07 4.97 4.97 Total: -1.00 -32.12 329.52 -6.97 -39.09 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.67 Total: 4.53 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -1.66 Total: 0.25 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.05 Total: -52.77 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.08 Total: -3.82 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.62 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.12 -6.97 -39.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019057321.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.642 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds