Wall clock time and date at job start Tue Mar 31 2020 05:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.84892 * 23.79955 * 10 9 7 12 12 C 1.53780 * 113.61668 * 154.99448 * 10 9 7 13 13 C 1.53781 * 87.08232 * 139.97914 * 12 10 9 14 14 H 1.09005 * 113.61867 * 220.02192 * 13 12 10 15 15 N 1.46496 * 113.61392 * 89.20002 * 13 12 10 16 16 C 1.34777 * 120.00000 * 155.00035 * 15 13 12 17 17 O 1.21283 * 120.00447 * 0.02562 * 16 15 13 18 18 C 1.50702 * 119.99975 * 180.02562 * 16 15 13 19 19 C 1.53008 * 109.47119 * 180.02562 * 18 16 15 20 20 C 1.53785 * 113.61175 * 272.49838 * 19 18 16 21 21 C 1.53785 * 87.07878 * 220.01768 * 20 19 18 22 22 F 1.39898 * 113.61504 * 270.88750 * 21 20 19 23 23 F 1.39898 * 113.61332 * 139.97987 * 21 20 19 24 24 C 1.53777 * 113.61548 * 175.00248 * 19 18 16 25 25 C 1.53782 * 113.61256 * 252.49493 * 10 9 7 26 26 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 28 28 H 1.08994 * 113.61573 * 254.52493 * 12 10 9 29 29 H 1.09004 * 113.60919 * 25.43453 * 12 10 9 30 30 H 0.96994 * 120.00449 * 335.00490 * 15 13 12 31 31 H 1.08993 * 109.47540 * 300.00053 * 18 16 15 32 32 H 1.08997 * 109.47171 * 60.00700 * 18 16 15 33 33 H 1.09001 * 112.84885 * 43.80319 * 19 18 16 34 34 H 1.09000 * 113.61644 * 334.56813 * 20 19 18 35 35 H 1.08999 * 113.61076 * 105.46809 * 20 19 18 36 36 H 1.09003 * 113.61121 * 254.52949 * 24 19 18 37 37 H 1.09004 * 113.61185 * 25.34443 * 24 19 18 38 38 H 1.08999 * 113.61640 * 334.56560 * 25 10 9 39 39 H 1.08997 * 113.61899 * 105.47187 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0652 -3.5640 0.4046 12 6 1.2597 -4.8290 0.5929 13 6 1.8482 -5.6974 -0.5316 14 1 1.1339 -6.4008 -0.9596 15 7 3.1246 -6.3252 -0.1813 16 6 3.5092 -7.4600 -0.7984 17 8 2.7989 -7.9612 -1.6441 18 6 4.8220 -8.1062 -0.4375 19 6 5.0165 -9.3699 -1.2780 20 6 4.3938 -10.6285 -0.6509 21 6 5.6444 -11.3877 -1.1251 22 9 5.5252 -11.9128 -2.4162 23 9 6.1172 -12.3228 -0.1982 24 6 6.3850 -10.0409 -1.0738 25 6 1.9999 -4.4015 -1.3458 26 1 -0.4850 -0.8401 -0.0004 27 1 0.3556 -2.3880 -0.0016 28 1 1.5905 -5.1219 1.5892 29 1 0.1794 -4.7004 0.5251 30 1 3.6929 -5.9243 0.4948 31 1 5.6365 -7.4096 -0.6358 32 1 4.8186 -8.3698 0.6201 33 1 4.7525 -9.2262 -2.3257 34 1 4.3003 -10.5754 0.4338 35 1 3.4751 -10.9514 -1.1406 36 1 7.0738 -9.8895 -1.9050 37 1 6.8365 -9.8259 -0.1053 38 1 1.1221 -4.1561 -1.9434 39 1 2.9284 -4.3494 -1.9144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020308821.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:15 Heat of formation + Delta-G solvation = -89.833151 kcal Electronic energy + Delta-G solvation = -22293.556709 eV Core-core repulsion = 18487.305901 eV Total energy + Delta-G solvation = -3806.250808 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.11102 -47.45126 -40.27542 -38.76012 -37.56404 -34.33230 -32.87663 -30.53896 -29.41841 -26.65469 -25.25818 -24.60565 -23.61589 -22.36622 -20.91293 -20.18666 -19.08299 -17.77136 -17.54141 -17.16708 -16.90222 -16.56423 -15.88926 -15.60597 -15.22145 -14.64395 -14.32646 -14.25961 -13.78753 -13.76783 -13.61112 -13.54064 -13.13328 -12.95217 -12.90382 -12.19180 -12.03285 -11.77743 -11.54162 -11.50058 -11.25611 -10.86288 -10.77640 -10.61490 -10.37400 -10.15605 -9.96147 -9.87601 -9.20675 -8.97979 -8.86563 -7.10470 -6.17064 -3.17567 2.55525 3.04226 3.14522 3.43991 3.47511 3.50849 3.68589 3.90029 3.95592 4.01677 4.59209 4.62625 4.78629 4.91744 4.97448 5.00821 5.04694 5.10643 5.16860 5.29604 5.31582 5.39733 5.42792 5.45050 5.74820 5.77108 5.88112 5.98686 6.09976 6.17578 6.39310 6.49933 6.55471 6.94611 7.49159 7.73525 8.18247 8.68609 9.14883 10.01244 10.15892 11.30971 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.043439 B = 0.002436 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.434028 B =11491.101451 C =11746.645221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.044 4.044 3 Si 1.080 2.920 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.338 4.338 8 H 0.065 0.935 9 N -0.724 5.724 10 C 0.173 3.827 11 H 0.075 0.925 12 C -0.161 4.161 13 C 0.116 3.884 14 H 0.096 0.904 15 N -0.708 5.708 16 C 0.512 3.488 17 O -0.541 6.541 18 C -0.130 4.130 19 C -0.087 4.087 20 C -0.159 4.159 21 C 0.252 3.748 22 F -0.180 7.180 23 F -0.193 7.193 24 C -0.162 4.162 25 C -0.176 4.176 26 H 0.255 0.745 27 H 0.369 0.631 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.401 0.599 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.387 -20.986 1.137 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.469 4.469 8 H 0.083 0.917 9 N -0.363 5.363 10 C 0.060 3.940 11 H 0.093 0.907 12 C -0.201 4.201 13 C 0.011 3.989 14 H 0.114 0.886 15 N -0.358 5.358 16 C 0.299 3.701 17 O -0.419 6.419 18 C -0.170 4.170 19 C -0.106 4.106 20 C -0.197 4.197 21 C 0.215 3.785 22 F -0.160 7.160 23 F -0.174 7.174 24 C -0.200 4.200 25 C -0.218 4.218 26 H 0.067 0.933 27 H 0.202 0.798 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.235 0.765 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.102 0.898 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.937 -19.653 0.534 23.000 hybrid contribution 0.245 -1.710 0.228 1.743 sum 12.182 -21.363 0.762 24.604 Atomic orbital electron populations 1.70892 1.06063 1.28486 1.53192 1.25816 0.97046 1.01129 1.00186 0.83243 0.74252 0.75578 0.75868 1.20976 1.22218 1.22212 1.20080 0.92035 0.85886 1.48861 0.91707 1.42408 1.04807 1.00869 1.88238 1.21553 0.95029 0.84665 0.92710 0.90736 1.23872 1.01453 0.97441 0.97342 1.21794 0.85160 0.94031 0.97956 0.88631 1.45732 1.22167 1.25811 1.42092 1.20547 0.87815 0.80418 0.81351 1.90705 1.55248 1.63450 1.32450 1.21622 0.96343 0.97471 1.01596 1.22162 0.94128 0.92516 1.01806 1.24181 0.97467 0.94602 1.03422 1.22105 0.98636 0.83979 0.73749 1.93024 1.96603 1.88419 1.37995 1.93006 1.89746 1.69559 1.65115 1.24194 0.98537 0.91599 1.05710 1.24291 1.01970 0.95352 1.00208 0.93344 0.79753 0.91680 0.89259 0.76498 0.87946 0.88342 0.86687 0.87130 0.88457 0.88633 0.86823 0.89785 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.74 13.70 55.49 0.76 -27.98 16 2 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 3 Si 1.08 25.42 29.92 -169.99 -5.09 20.33 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.34 -9.28 9.97 -15.06 -0.15 -9.43 16 8 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.72 -17.58 5.40 -52.64 -0.28 -17.86 16 10 C 0.17 3.22 4.36 -67.12 -0.29 2.93 16 11 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 12 C -0.16 -2.44 7.58 -25.92 -0.20 -2.63 16 13 C 0.12 1.66 4.32 -67.12 -0.29 1.37 16 14 H 0.10 1.46 7.46 -51.93 -0.39 1.07 16 15 N -0.71 -8.07 5.27 -53.01 -0.28 -8.35 16 16 C 0.51 5.86 7.83 -10.98 -0.09 5.77 16 17 O -0.54 -8.36 15.36 5.56 0.09 -8.27 16 18 C -0.13 -0.90 5.54 -27.88 -0.15 -1.05 16 19 C -0.09 -0.66 3.13 -89.80 -0.28 -0.94 16 20 C -0.16 -1.23 7.42 -25.91 -0.19 -1.42 16 21 C 0.25 2.15 3.28 -25.92 -0.08 2.06 16 22 F -0.18 -1.90 17.38 2.25 0.04 -1.86 16 23 F -0.19 -1.88 17.41 2.25 0.04 -1.84 16 24 C -0.16 -0.98 7.43 -25.92 -0.19 -1.18 16 25 C -0.18 -3.02 7.68 -25.91 -0.20 -3.21 16 26 H 0.26 7.65 6.77 -40.82 -0.28 7.37 16 27 H 0.37 9.25 6.75 -40.82 -0.28 8.98 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.39 8.12 -51.93 -0.42 0.97 16 30 H 0.40 3.63 8.70 -40.82 -0.36 3.27 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.46 7.84 -51.93 -0.41 0.05 16 33 H 0.12 1.09 7.67 -51.93 -0.40 0.69 16 34 H 0.11 0.68 7.90 -51.93 -0.41 0.27 16 35 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.11 0.48 8.10 -51.93 -0.42 0.06 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 333.88 15.07 5.03 5.03 Total: -1.00 -33.47 333.88 -7.43 -40.89 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -5.52 Total: 8.98 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -2.21 Total: -9.08 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.20 Total: -54.19 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.08 Total: -3.70 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.09 Total: 20.33 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.47 -7.43 -40.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020308821.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.938 kcal (2) G-P(sol) polarization free energy of solvation -33.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds