Wall clock time and date at job start Tue Mar 31 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47014 * 125.64902 * 359.68887 * 9 7 2 11 11 C 1.54334 * 107.26782 * 178.84833 * 10 9 7 12 12 C 1.55157 * 103.02095 * 338.14225 * 11 10 9 13 13 H 1.09002 * 111.00558 * 277.23486 * 12 11 10 14 14 C 1.52997 * 111.04029 * 153.39138 * 12 11 10 15 15 N 1.46496 * 109.47140 * 181.33281 * 14 12 11 16 16 C 1.34782 * 119.99562 * 179.97438 * 15 14 12 17 17 O 1.21278 * 120.00071 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99935 * 179.97438 * 16 15 14 19 19 H 1.09007 * 115.54766 * 325.58745 * 18 16 15 20 20 C 1.52994 * 117.49718 * 111.25446 * 18 16 15 21 21 C 1.52991 * 117.50121 * 179.91535 * 18 16 15 22 22 H 1.09004 * 117.49954 * 0.02562 * 21 18 16 23 23 C 1.53001 * 117.50207 * 145.01858 * 21 18 16 24 24 F 1.39893 * 109.47599 * 180.02562 * 23 21 18 25 25 F 1.39901 * 109.47235 * 300.00409 * 23 21 18 26 26 C 1.47428 * 125.64502 * 180.02562 * 9 7 2 27 27 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.88634 * 298.40065 * 10 9 7 29 29 H 1.09007 * 109.88158 * 59.56026 * 10 9 7 30 30 H 1.08998 * 110.85377 * 219.67563 * 11 10 9 31 31 H 1.09002 * 110.66690 * 96.52236 * 11 10 9 32 32 H 1.09002 * 109.46912 * 301.33716 * 14 12 11 33 33 H 1.08998 * 109.46664 * 61.33102 * 14 12 11 34 34 H 0.96996 * 120.00412 * 0.02562 * 15 14 12 35 35 H 1.09001 * 117.49983 * 214.98035 * 20 18 16 36 36 H 1.08994 * 117.50121 * 359.97438 * 20 18 16 37 37 H 1.09004 * 109.46886 * 60.00051 * 23 21 18 38 38 H 1.09003 * 110.36579 * 322.92327 * 26 9 7 39 39 H 1.08993 * 110.36917 * 85.14279 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0065 11 6 -0.4483 -4.0441 -0.0256 12 6 0.8519 -4.6562 -0.6105 13 1 0.8567 -4.5965 -1.6988 14 6 1.0377 -6.1010 -0.1426 15 7 2.2887 -6.6338 -0.6878 16 6 2.6623 -7.8977 -0.4059 17 8 1.9627 -8.5941 0.2987 18 6 3.9489 -8.4461 -0.9672 19 1 4.2175 -8.0899 -1.9618 20 6 5.0882 -8.7210 0.0162 21 6 4.3185 -9.8869 -0.6092 22 1 3.6309 -10.4384 0.0320 23 6 5.0372 -10.7174 -1.6744 24 9 5.2925 -11.9984 -1.1733 25 9 4.2301 -10.8149 -2.8129 26 6 1.9336 -3.7311 0.0016 27 1 -0.4850 0.8401 0.0004 28 1 -0.5504 -2.0864 0.9110 29 1 -0.5612 -2.0503 -0.8743 30 1 -1.2985 -4.2517 -0.6754 31 1 -0.6329 -4.4204 0.9807 32 1 1.0752 -6.1282 0.9465 33 1 0.2018 -6.7066 -0.4925 34 1 2.8485 -6.0768 -1.2510 35 1 6.1064 -8.5460 -0.3314 36 1 4.9074 -8.5048 1.0691 37 1 5.9789 -10.2352 -1.9368 38 1 2.8333 -3.7407 -0.6138 39 1 2.1681 -4.0406 1.0200 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028516741.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:27 Heat of formation + Delta-G solvation = -97.649998 kcal Electronic energy + Delta-G solvation = -22408.177098 eV Core-core repulsion = 18601.587326 eV Total energy + Delta-G solvation = -3806.589771 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.24294 -47.27206 -40.16524 -37.93784 -36.83306 -34.69229 -32.53552 -29.95723 -28.55719 -27.57630 -25.79655 -24.44662 -23.00819 -21.85399 -20.58659 -19.98730 -19.64798 -18.20574 -17.49372 -17.24122 -16.87050 -16.58139 -15.91260 -15.41998 -14.89511 -14.59953 -14.25046 -14.16687 -13.77918 -13.63887 -13.63269 -13.10797 -13.03744 -12.54870 -12.39050 -12.04404 -11.78064 -11.44940 -11.38154 -11.14990 -10.96999 -10.93190 -10.82381 -10.46897 -10.19731 -10.06289 -9.92169 -9.80594 -9.69180 -9.04727 -8.63309 -6.86930 -5.74538 -3.08446 2.26683 2.88692 3.15860 3.37346 3.42060 3.44278 3.49494 3.82348 4.03559 4.19699 4.43958 4.46309 4.69445 4.78150 4.82738 5.05339 5.16898 5.20061 5.38100 5.46110 5.50406 5.60486 5.64908 5.85170 5.99746 6.01869 6.29932 6.37668 6.44991 6.49945 6.63658 6.86510 7.45462 7.52496 7.60086 7.79503 8.13311 8.22805 9.18674 9.79134 10.44988 11.37180 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.030633 B = 0.002758 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.818805 B =10149.729486 C =10689.584085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.281 1.281 6 H -0.290 1.290 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.118 4.118 13 H 0.080 0.920 14 C 0.132 3.868 15 N -0.717 5.717 16 C 0.541 3.459 17 O -0.542 6.542 18 C -0.167 4.167 19 H 0.132 0.868 20 C -0.127 4.127 21 C -0.193 4.193 22 H 0.140 0.860 23 C 0.297 3.703 24 F -0.201 7.201 25 F -0.201 7.201 26 C 0.143 3.857 27 H 0.252 0.748 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.404 0.596 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.035 0.965 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.520 -18.171 -3.465 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.358 4.358 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.138 4.138 13 H 0.098 0.902 14 C 0.009 3.991 15 N -0.367 5.367 16 C 0.326 3.674 17 O -0.420 6.420 18 C -0.189 4.189 19 H 0.150 0.850 20 C -0.164 4.164 21 C -0.213 4.213 22 H 0.158 0.842 23 C 0.243 3.757 24 F -0.182 7.182 25 F -0.183 7.183 26 C 0.016 3.984 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.239 0.761 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.053 0.947 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.922 -18.439 -2.982 20.700 hybrid contribution 0.566 1.125 -0.363 1.310 sum 9.488 -17.314 -3.344 20.025 Atomic orbital electron populations 1.69967 1.04900 1.25073 1.56973 1.24814 0.95731 0.97718 1.02209 0.86116 0.78552 0.83473 0.77585 1.21596 1.20695 1.21657 1.19046 0.90404 0.82434 1.43944 0.90480 1.44485 1.01745 0.99857 1.87194 1.21152 0.84315 0.88154 1.01139 1.22862 0.95422 0.99401 0.99694 1.22624 0.98694 0.91905 1.00570 0.90157 1.21432 0.84966 0.93887 0.98826 1.45964 1.24893 1.13324 1.52507 1.19407 0.85738 0.81822 0.80437 1.90711 1.54493 1.58485 1.38315 1.22241 0.96405 0.98033 1.02178 0.84969 1.23147 0.95802 0.97856 0.99616 1.23358 1.04890 0.90938 1.02084 0.84200 1.21303 0.93261 0.80419 0.80731 1.92998 1.94788 1.42497 1.87895 1.93015 1.76346 1.96430 1.52476 1.21562 0.93927 0.86188 0.96698 0.93718 0.93916 0.93484 0.91937 0.92229 0.91281 0.91569 0.76143 0.86786 0.86808 0.86909 0.94660 0.96364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.85 10.31 55.49 0.57 -26.28 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.61 -15.11 3.39 -170.05 -0.58 -15.68 16 10 C 0.18 4.21 5.37 -3.06 -0.02 4.19 16 11 C -0.13 -2.41 6.42 -24.89 -0.16 -2.57 16 12 C -0.12 -1.89 3.11 -88.46 -0.27 -2.16 16 13 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 14 C 0.13 1.83 5.13 -4.05 -0.02 1.81 16 15 N -0.72 -8.53 5.41 -60.30 -0.33 -8.85 16 16 C 0.54 6.74 7.61 -10.98 -0.08 6.66 16 17 O -0.54 -8.86 16.26 5.56 0.09 -8.77 16 18 C -0.17 -1.42 5.86 -91.78 -0.54 -1.96 16 19 H 0.13 0.83 8.14 -51.92 -0.42 0.40 16 20 C -0.13 -0.83 9.88 -26.70 -0.26 -1.09 16 21 C -0.19 -1.62 5.41 -90.59 -0.49 -2.11 16 22 H 0.14 1.46 7.67 -51.93 -0.40 1.06 16 23 C 0.30 2.21 5.50 37.16 0.20 2.41 16 24 F -0.20 -1.89 17.34 2.25 0.04 -1.85 16 25 F -0.20 -2.00 17.29 2.25 0.04 -1.96 16 26 C 0.14 2.75 6.40 -2.51 -0.02 2.74 16 27 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.04 1.13 7.52 -51.93 -0.39 0.74 16 29 H 0.05 1.24 7.37 -51.93 -0.38 0.85 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 32 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.40 4.01 8.34 -40.82 -0.34 3.67 16 35 H 0.11 0.42 8.05 -51.93 -0.42 0.00 16 36 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.11 0.43 7.90 -51.93 -0.41 0.02 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.02 0.37 8.01 -51.93 -0.42 -0.05 16 LS Contribution 333.32 15.07 5.02 5.02 Total: -1.00 -33.06 333.32 -7.75 -40.80 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.68 Total: -0.33 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.91 Total: 1.14 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.33 Total: -50.82 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.08 Total: -3.81 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.06 -7.75 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028516741.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.846 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds