Wall clock time and date at job start Tue Mar 31 2020 05:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00001 * 2 1 4 4 H 1.48501 * 109.47169 * 239.99762 * 3 2 1 5 5 H 1.48500 * 109.47644 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47273 * 120.00216 * 3 2 1 7 7 C 1.38818 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99771 * 195.64758 * 7 2 1 9 9 N 1.36930 * 119.99914 * 15.64786 * 7 2 1 10 10 C 1.44575 * 118.64492 * 206.47822 * 9 7 2 11 11 C 1.54864 * 109.60319 * 270.75279 * 10 9 7 12 12 C 1.47100 * 110.31914 * 288.73185 * 11 10 9 13 13 C 1.52571 * 114.20726 * 62.87931 * 12 11 10 14 14 C 1.51035 * 109.27387 * 274.77709 * 13 12 11 15 15 H 1.09000 * 109.34115 * 331.96814 * 14 13 12 16 16 N 1.46506 * 109.41180 * 212.21250 * 14 13 12 17 17 C 1.34780 * 119.99732 * 154.49039 * 16 14 13 18 18 O 1.21276 * 120.00021 * 359.97438 * 17 16 14 19 19 C 1.50693 * 119.99665 * 179.97438 * 17 16 14 20 20 H 1.09001 * 115.55237 * 325.66469 * 19 17 16 21 21 C 1.52998 * 117.49941 * 111.37808 * 19 17 16 22 22 C 1.52995 * 60.00118 * 107.48748 * 21 19 17 23 23 F 1.39902 * 117.49988 * 252.50910 * 22 21 19 24 24 F 1.39901 * 117.52216 * 107.48300 * 22 21 19 25 25 C 1.47612 * 118.64483 * 26.50120 * 9 7 2 26 26 H 0.96997 * 119.99797 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.45067 * 150.71239 * 10 9 7 28 28 H 1.09006 * 109.44929 * 30.78918 * 10 9 7 29 29 H 1.08992 * 109.32854 * 168.46719 * 11 10 9 30 30 H 1.08994 * 109.32536 * 48.98686 * 11 10 9 31 31 H 1.08996 * 108.50925 * 184.05446 * 12 11 10 32 32 H 1.09000 * 108.51148 * 301.69781 * 12 11 10 33 33 H 1.08997 * 109.48747 * 34.87440 * 13 12 11 34 34 H 1.09002 * 109.48790 * 154.94170 * 13 12 11 35 35 H 0.96999 * 120.00016 * 334.49140 * 16 14 13 36 36 H 1.09000 * 117.49899 * 214.97811 * 21 19 17 37 37 H 1.08994 * 117.49858 * 359.97438 * 21 19 17 38 38 H 1.08993 * 108.94571 * 258.52796 * 25 9 7 39 39 H 1.09001 * 108.94422 * 17.24977 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0603 -1.2197 0.2517 9 7 1.3636 -2.3659 -0.3209 10 6 1.8695 -3.6099 0.2145 11 6 2.9231 -4.2021 -0.7537 12 6 2.2709 -4.7059 -1.9722 13 6 1.5647 -3.6316 -2.7937 14 6 0.1711 -3.4238 -2.2498 15 1 -0.1775 -4.3474 -1.7877 16 7 -0.7300 -3.0587 -3.3458 17 6 -2.0494 -3.3155 -3.2474 18 8 -2.4906 -3.8493 -2.2518 19 6 -2.9763 -2.9394 -4.3745 20 1 -2.7155 -2.0287 -4.9136 21 6 -3.6129 -4.0772 -5.1751 22 6 -4.4629 -3.2573 -4.2025 23 9 -4.8578 -3.8749 -3.0108 24 9 -5.3836 -2.3569 -4.7491 25 6 0.1791 -2.2986 -1.1992 26 1 -0.4850 0.8400 -0.0004 27 1 1.0471 -4.3157 0.3318 28 1 2.3310 -3.4264 1.1849 29 1 3.4470 -5.0205 -0.2601 30 1 3.6412 -3.4276 -1.0229 31 1 3.0267 -5.1796 -2.5986 32 1 1.5381 -5.4603 -1.6859 33 1 2.1252 -2.6989 -2.7312 34 1 1.5039 -3.9507 -3.8342 35 1 -0.3769 -2.6321 -4.1422 36 1 -3.7709 -3.9153 -6.2414 37 1 -3.3610 -5.0977 -4.8869 38 1 -0.7197 -2.3788 -0.5878 39 1 0.1732 -1.3369 -1.7123 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034196413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:01 Heat of formation + Delta-G solvation = -80.857209 kcal Electronic energy + Delta-G solvation = -23913.366473 eV Core-core repulsion = 20107.504892 eV Total energy + Delta-G solvation = -3805.861582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.66081 -47.29240 -39.75236 -37.84798 -35.63271 -34.40515 -33.55398 -30.79506 -30.09584 -26.16881 -24.92312 -24.13068 -22.84921 -22.45255 -20.40032 -19.81097 -19.26322 -18.19041 -17.01041 -16.64177 -16.18946 -16.00699 -15.35905 -15.29393 -14.59868 -14.13100 -14.08526 -13.93297 -13.65685 -13.50918 -13.28238 -13.24780 -12.88621 -12.55709 -12.44874 -12.10214 -11.36328 -11.32556 -11.15061 -10.99810 -10.71763 -10.46739 -10.29695 -10.22767 -10.16186 -9.97589 -9.80619 -9.60018 -9.47844 -8.59857 -8.38639 -6.65128 -5.76330 -3.21531 2.39638 2.82141 3.14548 3.36523 3.42859 3.43684 3.45792 4.11284 4.33836 4.49795 4.52308 4.89656 5.14094 5.23257 5.32011 5.41222 5.45121 5.57170 5.61665 5.68221 5.89232 6.00573 6.17734 6.31617 6.46532 6.58864 6.63704 6.64745 6.75805 6.87818 6.95096 7.09622 7.35961 7.73324 7.82111 7.84089 8.45732 8.49685 9.24007 9.91072 10.36475 11.29925 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.016412 B = 0.005120 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.622187 B = 5467.440374 C = 6550.734369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.005 3.995 3 Si 0.900 3.100 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.587 5.587 10 C 0.154 3.846 11 C -0.148 4.148 12 C -0.098 4.098 13 C -0.115 4.115 14 C 0.119 3.881 15 H 0.075 0.925 16 N -0.708 5.708 17 C 0.537 3.463 18 O -0.519 6.519 19 C -0.192 4.192 20 H 0.147 0.853 21 C -0.151 4.151 22 C 0.228 3.772 23 F -0.137 7.137 24 F -0.159 7.159 25 C 0.174 3.826 26 H 0.254 0.746 27 H 0.032 0.968 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.397 0.603 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.032 0.968 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.669 -8.167 -12.965 15.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.194 4.194 3 Si 0.730 3.270 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.308 5.308 10 C 0.026 3.974 11 C -0.188 4.188 12 C -0.136 4.136 13 C -0.153 4.153 14 C 0.014 3.986 15 H 0.093 0.907 16 N -0.359 5.359 17 C 0.321 3.679 18 O -0.394 6.394 19 C -0.214 4.214 20 H 0.165 0.835 21 C -0.189 4.189 22 C 0.191 3.809 23 F -0.117 7.117 24 F -0.140 7.140 25 C 0.048 3.952 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.230 0.770 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.050 0.950 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.167 -8.414 -12.168 15.129 hybrid contribution 0.445 1.368 -0.383 1.489 sum -2.722 -7.045 -12.551 14.648 Atomic orbital electron populations 1.70085 1.05147 1.25515 1.53636 1.25068 0.95237 0.98362 1.00764 0.86414 0.78901 0.83591 0.78105 1.21118 1.21711 1.20865 1.19154 0.92390 0.84917 1.42543 0.91638 1.43522 1.32410 1.02065 1.52817 1.20742 0.94103 0.88243 0.94326 1.21502 1.00184 0.99735 0.97386 1.20224 0.98969 0.97417 0.97026 1.21310 0.95599 1.00940 0.97450 1.21871 0.87859 1.00887 0.87992 0.90731 1.46033 1.06700 1.61961 1.21158 1.19096 0.82742 0.79463 0.86631 1.90799 1.75720 1.42084 1.30806 1.23679 0.93323 1.03146 1.01286 0.83511 1.24257 0.97461 0.98174 0.98992 1.19462 0.84270 0.92330 0.84863 1.93137 1.91708 1.81560 1.45328 1.93038 1.68187 1.67953 1.84779 1.21314 0.89204 0.95067 0.89613 0.93613 0.94923 0.93544 0.93431 0.92076 0.93681 0.93215 0.89993 0.93099 0.76977 0.85161 0.85516 0.95008 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 11.01 55.49 0.61 -25.57 16 2 C 0.00 0.13 4.87 -17.43 -0.08 0.04 16 3 Si 0.90 21.45 29.58 -169.99 -5.03 16.42 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.26 -6.96 9.44 -15.06 -0.14 -7.10 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.32 2.27 -172.09 -0.39 -14.71 16 10 C 0.15 3.21 5.65 -4.09 -0.02 3.19 16 11 C -0.15 -2.53 5.73 -28.58 -0.16 -2.70 16 12 C -0.10 -1.53 5.16 -29.78 -0.15 -1.68 16 13 C -0.11 -1.85 5.07 -27.94 -0.14 -1.99 16 14 C 0.12 2.19 2.28 -68.42 -0.16 2.04 16 15 H 0.07 1.49 6.73 -51.93 -0.35 1.14 16 16 N -0.71 -10.93 4.97 -54.29 -0.27 -11.20 16 17 C 0.54 8.82 7.58 -10.99 -0.08 8.74 16 18 O -0.52 -10.91 14.80 5.56 0.08 -10.83 16 19 C -0.19 -2.28 6.17 -91.78 -0.57 -2.85 16 20 H 0.15 1.34 8.14 -51.93 -0.42 0.92 16 21 C -0.15 -1.35 10.20 -26.73 -0.27 -1.62 16 22 C 0.23 2.99 5.19 -26.73 -0.14 2.85 16 23 F -0.14 -2.30 15.71 2.25 0.04 -2.26 16 24 F -0.16 -2.07 17.60 2.25 0.04 -2.03 16 25 C 0.17 4.15 4.25 -2.94 -0.01 4.13 16 26 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 28 H 0.05 0.98 7.99 -51.93 -0.41 0.57 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.77 7.35 -51.93 -0.38 0.39 16 33 H 0.08 1.51 7.48 -51.93 -0.39 1.12 16 34 H 0.05 0.68 7.95 -51.93 -0.41 0.27 16 35 H 0.40 4.78 8.56 -40.82 -0.35 4.43 16 36 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.03 0.89 8.03 -51.93 -0.42 0.48 16 39 H 0.08 2.02 6.31 -51.93 -0.33 1.69 16 LS Contribution 322.36 15.07 4.86 4.86 Total: -1.00 -32.30 322.36 -7.55 -39.84 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.54 Total: 2.42 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -1.94 Total: 3.05 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.05 Total: -51.47 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.08 Total: -4.29 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.30 -7.55 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034196413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.013 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds