Wall clock time and date at job start Tue Mar 31 2020 05:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99908 * 2 1 4 4 H 1.48498 * 109.47084 * 269.99617 * 3 2 1 5 5 H 1.48499 * 109.47413 * 29.99495 * 3 2 1 6 6 H 1.48506 * 109.47266 * 149.99848 * 3 2 1 7 7 C 1.38814 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00118 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99775 * 0.02562 * 7 2 1 10 10 C 1.47169 * 125.25468 * 359.13308 * 9 7 2 11 11 C 1.53699 * 107.73126 * 180.40359 * 10 9 7 12 12 H 1.09000 * 113.05178 * 254.94186 * 11 10 9 13 13 C 1.53729 * 109.34105 * 128.69764 * 11 10 9 14 14 N 1.46666 * 107.93970 * 266.24817 * 13 11 10 15 15 C 1.34779 * 125.33847 * 180.54569 * 14 13 11 16 16 O 1.21553 * 119.99734 * 5.76326 * 15 14 13 17 17 C 1.47828 * 120.00025 * 185.76387 * 15 14 13 18 18 C 1.39953 * 120.93872 * 204.10535 * 17 15 14 19 19 N 1.32145 * 118.92139 * 179.97438 * 18 17 15 20 20 C 1.31867 * 120.97281 * 0.02562 * 19 18 17 21 21 N 1.31866 * 122.09403 * 0.27694 * 20 19 18 22 22 C 1.32158 * 120.96847 * 359.43767 * 21 20 19 23 23 C 1.46779 * 109.32482 * 0.81053 * 14 13 11 24 24 C 1.54158 * 106.52566 * 341.08965 * 23 14 13 25 25 H 1.09005 * 113.23848 * 266.01631 * 24 23 14 26 26 C 1.46742 * 125.32664 * 180.02562 * 9 7 2 27 27 H 0.97000 * 119.99918 * 0.02562 * 1 2 3 28 28 H 1.08992 * 108.95190 * 61.38259 * 10 9 7 29 29 H 1.08998 * 110.84038 * 300.49925 * 10 9 7 30 30 H 1.08996 * 109.77373 * 146.62981 * 13 11 10 31 31 H 1.09001 * 109.77310 * 25.86570 * 13 11 10 32 32 H 1.08000 * 120.53604 * 359.95436 * 18 17 15 33 33 H 1.07997 * 118.95393 * 179.97438 * 20 19 18 34 34 H 1.07991 * 120.53899 * 180.29473 * 22 21 20 35 35 H 1.09001 * 110.02808 * 100.51069 * 23 14 13 36 36 H 1.08994 * 110.02934 * 221.92721 * 23 14 13 37 37 H 1.08997 * 110.01070 * 42.34280 * 26 9 7 38 38 H 1.09002 * 110.01010 * 280.97007 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1398 -2.5229 0.0182 11 6 -0.4718 -4.0236 0.0217 12 1 -0.8301 -4.3837 -0.9427 13 6 -1.4535 -4.3251 1.1656 14 7 -0.6710 -4.7370 2.3357 15 6 -1.1835 -5.0926 3.5304 16 8 -2.3870 -5.1890 3.6710 17 6 -0.2820 -5.3655 4.6698 18 6 -0.6876 -6.1873 5.7275 19 7 0.1507 -6.4047 6.7256 20 6 1.3517 -5.8602 6.7340 21 7 1.7719 -5.0754 5.7613 22 6 1.0011 -4.8088 4.7215 23 6 0.7581 -4.6950 2.0036 24 6 0.8513 -4.7080 0.4649 25 1 0.9784 -5.7080 0.0501 26 6 1.9382 -3.7215 0.0016 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5489 -2.0570 -0.8782 29 1 -0.5620 -2.0500 0.9048 30 1 -2.1272 -5.1297 0.8709 31 1 -2.0289 -3.4304 1.4032 32 1 -1.6699 -6.6362 5.7281 33 1 2.0103 -6.0596 7.5664 34 1 1.3540 -4.1689 3.9264 35 1 1.2069 -3.7842 2.3999 36 1 1.2627 -5.5695 2.4144 37 1 2.7812 -3.7441 0.6921 38 1 2.2718 -3.9795 -1.0035 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048779986.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:21 Heat of formation + Delta-G solvation = 61.278890 kcal Electronic energy + Delta-G solvation = -23042.757076 eV Core-core repulsion = 19693.748165 eV Total energy + Delta-G solvation = -3349.008911 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42772 -40.03646 -38.23124 -35.17333 -33.98050 -32.81763 -32.13066 -30.28429 -29.55897 -26.23014 -25.86899 -24.92191 -24.52273 -22.93069 -20.25297 -20.08158 -19.45929 -17.97512 -17.76281 -17.13730 -16.73776 -16.30302 -15.32082 -15.12019 -14.67074 -14.36210 -14.10086 -13.85517 -13.63643 -13.35246 -13.00500 -12.80578 -12.23519 -12.08819 -11.78926 -11.58293 -11.50001 -11.07926 -10.96489 -10.86182 -10.53681 -10.21377 -10.16277 -10.02939 -9.95492 -9.80685 -9.71059 -9.50042 -8.68394 -8.52490 -6.92606 -5.79831 -3.14068 0.28531 0.81616 2.71859 2.93457 3.35788 3.41293 3.43136 3.59182 3.86309 3.93032 4.26699 4.34211 4.43259 4.66674 4.68709 4.93313 5.08259 5.16159 5.41074 5.42986 5.45974 5.54406 5.60886 5.69269 5.84067 6.00780 6.07956 6.13375 6.21600 6.37600 6.46425 6.50721 6.62327 6.69714 7.43824 7.48916 7.52980 7.73386 7.76361 8.05865 8.17345 9.13397 9.74259 10.36906 11.31675 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.018641 B = 0.004833 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.701077 B = 5791.841010 C = 6389.436474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.184 3.816 11 C -0.123 4.123 12 H 0.094 0.906 13 C 0.121 3.879 14 N -0.599 5.599 15 C 0.580 3.420 16 O -0.536 6.536 17 C -0.233 4.233 18 C 0.203 3.797 19 N -0.525 5.525 20 C 0.307 3.693 21 N -0.519 5.519 22 C 0.174 3.826 23 C 0.103 3.897 24 C -0.110 4.110 25 H 0.092 0.908 26 C 0.145 3.855 27 H 0.253 0.747 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.179 0.821 33 H 0.201 0.799 34 H 0.187 0.813 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.125 -12.849 6.568 14.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.059 3.941 11 C -0.143 4.143 12 H 0.112 0.888 13 C -0.001 4.001 14 N -0.331 5.331 15 C 0.367 3.633 16 O -0.414 6.414 17 C -0.241 4.241 18 C 0.036 3.964 19 N -0.238 5.238 20 C 0.020 3.980 21 N -0.232 5.232 22 C 0.008 3.992 23 C -0.020 4.020 24 C -0.130 4.130 25 H 0.110 0.890 26 C 0.019 3.981 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.196 0.804 33 H 0.217 0.783 34 H 0.203 0.797 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.015 -12.856 7.492 14.914 hybrid contribution -0.050 1.147 -0.699 1.344 sum 0.965 -11.709 6.792 13.571 Atomic orbital electron populations 1.69942 1.04898 1.25211 1.56754 1.24794 0.95700 0.97730 1.01928 0.86129 0.78619 0.83444 0.77619 1.21539 1.21685 1.20636 1.19033 0.90466 0.82252 1.44297 0.90303 1.44352 1.01405 0.99903 1.87369 1.21235 0.84529 0.86616 1.01713 1.23192 0.93590 1.00571 0.96936 0.88795 1.21910 0.94020 1.00010 0.84187 1.48135 1.08510 1.65088 1.11350 1.17370 0.87159 0.77620 0.81114 1.90788 1.14531 1.52952 1.83125 1.21791 0.97861 1.04916 0.99504 1.23441 0.98400 0.88833 0.85690 1.68546 1.04909 1.24098 1.26280 1.25273 0.90526 0.86860 0.95323 1.68571 1.36855 1.15397 1.02420 1.24349 0.88129 0.91959 0.94796 1.22475 0.81331 1.01333 0.96838 1.22957 0.97520 0.99461 0.93070 0.89013 1.21155 0.93558 0.85632 0.97771 0.93635 0.93357 0.93130 0.91792 0.90447 0.80418 0.78296 0.79680 0.89719 0.91354 0.94375 0.95898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.92 10.25 55.49 0.57 -25.35 16 2 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 3 Si 0.91 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.23 -6.07 10.25 -15.06 -0.15 -6.23 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.01 3.39 -171.52 -0.58 -14.59 16 10 C 0.18 4.05 4.77 -3.31 -0.02 4.03 16 11 C -0.12 -2.02 4.01 -88.60 -0.36 -2.37 16 12 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 13 C 0.12 1.91 6.24 -3.57 -0.02 1.89 16 14 N -0.60 -9.17 3.31 -173.29 -0.57 -9.74 16 15 C 0.58 9.11 7.66 -12.34 -0.09 9.01 16 16 O -0.54 -9.78 17.00 5.32 0.09 -9.69 16 17 C -0.23 -3.14 5.70 -104.69 -0.60 -3.73 16 18 C 0.20 2.48 10.89 -16.78 -0.18 2.30 16 19 N -0.53 -6.21 10.42 -14.25 -0.15 -6.35 16 20 C 0.31 3.32 12.27 -92.03 -1.13 2.19 16 21 N -0.52 -6.54 10.42 -14.25 -0.15 -6.69 16 22 C 0.17 2.26 9.48 -16.77 -0.16 2.10 16 23 C 0.10 1.44 4.34 -3.28 -0.01 1.42 16 24 C -0.11 -1.62 4.14 -88.26 -0.37 -1.98 16 25 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 26 C 0.15 2.62 6.41 -3.43 -0.02 2.60 16 27 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.05 1.21 7.40 -51.93 -0.38 0.83 16 29 H 0.05 1.26 6.58 -51.93 -0.34 0.92 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.36 7.44 -51.93 -0.39 0.97 16 32 H 0.18 1.90 7.92 -52.49 -0.42 1.48 16 33 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.19 2.39 4.52 -52.49 -0.24 2.15 16 35 H 0.09 1.33 6.06 -51.93 -0.31 1.01 16 36 H 0.07 0.80 7.14 -51.93 -0.37 0.43 16 37 H 0.04 0.66 7.97 -51.93 -0.41 0.24 16 38 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 309.08 15.07 4.66 4.66 Total: -1.00 -31.02 309.08 -8.89 -39.91 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -4.52 Total: 0.49 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: -3.21 Total: 10.99 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -0.88 Total: -62.73 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.02 -8.89 -39.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048779986.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.187 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds