Wall clock time and date at job start Tue Mar 31 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00189 * 2 1 4 4 H 1.48497 * 109.47100 * 85.02076 * 3 2 1 5 5 H 1.48501 * 109.46936 * 325.02395 * 3 2 1 6 6 H 1.48494 * 109.47368 * 205.02257 * 3 2 1 7 7 C 1.38810 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99787 * 189.16164 * 7 2 1 9 9 N 1.36932 * 120.00550 * 9.16826 * 7 2 1 10 10 C 1.50239 * 130.83527 * 9.85256 * 9 7 2 11 11 H 1.09003 * 115.85738 * 359.68018 * 10 9 7 12 12 C 1.55385 * 101.26436 * 234.04204 * 10 9 7 13 13 C 1.54860 * 103.48424 * 327.25086 * 12 10 9 14 14 C 1.50242 * 130.84328 * 190.19217 * 9 7 2 15 15 H 1.09002 * 115.85362 * 0.31818 * 14 9 7 16 16 C 1.55841 * 101.05190 * 233.93061 * 14 9 7 17 17 H 1.09009 * 110.62633 * 85.55178 * 16 14 9 18 18 N 1.46494 * 110.62882 * 208.56911 * 16 14 9 19 19 C 1.34773 * 120.00266 * 274.16202 * 18 16 14 20 20 O 1.21482 * 120.00217 * 359.97438 * 19 18 16 21 21 C 1.48461 * 120.00333 * 179.97438 * 19 18 16 22 22 C 1.39534 * 120.54943 * 179.71848 * 21 19 18 23 23 C 1.38764 * 118.25716 * 179.76124 * 22 21 19 24 24 N 1.32199 * 119.15107 * 0.51318 * 23 22 21 25 25 C 1.31878 * 121.03486 * 359.74412 * 24 23 22 26 26 N 1.31583 * 121.92100 * 359.97438 * 25 24 23 27 27 C 1.55480 * 103.32782 * 326.97513 * 16 14 9 28 28 H 0.96996 * 119.99560 * 359.97438 * 1 2 3 29 29 H 1.08997 * 110.71784 * 208.69901 * 12 10 9 30 30 H 1.09004 * 110.49917 * 85.69915 * 12 10 9 31 31 H 1.08998 * 110.62680 * 241.38377 * 13 12 10 32 32 H 1.08993 * 110.62426 * 118.35903 * 13 12 10 33 33 H 0.97003 * 120.00059 * 94.15229 * 18 16 14 34 34 H 1.08000 * 120.87106 * 359.97438 * 22 21 19 35 35 H 1.07998 * 120.42340 * 180.28034 * 23 22 21 36 36 H 1.08005 * 119.04073 * 180.02562 * 25 24 23 37 37 H 1.08993 * 110.60891 * 241.58450 * 27 16 14 38 38 H 1.09005 * 110.89167 * 118.54897 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3925 2.1071 1.3948 5 1 1.5043 2.6200 -0.8026 6 1 3.5964 1.4121 -0.5922 7 6 2.0102 -1.2022 -0.0005 8 1 3.0799 -1.2083 0.1484 9 7 1.3387 -2.3804 -0.1900 10 6 -0.0799 -2.6466 -0.6069 11 1 -0.6951 -1.7654 -0.7895 12 6 -0.5656 -3.5721 0.5428 13 6 0.7082 -4.3611 0.9338 14 6 1.7917 -3.8049 -0.0385 15 1 2.8250 -3.9438 0.2795 16 6 1.4194 -4.3869 -1.4354 17 1 2.2195 -4.2045 -2.1530 18 7 1.1293 -5.8194 -1.3370 19 6 2.1327 -6.7166 -1.4071 20 8 3.2776 -6.3373 -1.5522 21 6 1.8388 -8.1683 -1.3068 22 6 2.8680 -9.1073 -1.3837 23 6 2.5401 -10.4516 -1.2793 24 7 1.2733 -10.7951 -1.1221 25 6 0.3240 -9.8818 -1.0587 26 7 0.5887 -8.5959 -1.1474 27 6 0.1393 -3.5947 -1.8242 28 1 -0.4849 0.8400 0.0004 29 1 -1.3435 -4.2493 0.1902 30 1 -0.9237 -2.9794 1.3846 31 1 0.5621 -5.4295 0.7751 32 1 0.9819 -4.1596 1.9694 33 1 0.2151 -6.1224 -1.2214 34 1 3.8934 -8.7958 -1.5175 35 1 3.3096 -11.2077 -1.3295 36 1 -0.7004 -10.1985 -0.9293 37 1 -0.7083 -4.2696 -1.9428 38 1 0.3005 -3.0186 -2.7355 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096197839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:39 Heat of formation + Delta-G solvation = 68.557638 kcal Electronic energy + Delta-G solvation = -22800.379584 eV Core-core repulsion = 19451.686303 eV Total energy + Delta-G solvation = -3348.693281 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.39472 -39.89064 -38.30995 -34.40562 -33.74223 -32.34322 -32.28876 -29.34788 -29.05185 -27.82080 -25.59839 -24.63305 -24.06150 -21.67638 -21.01524 -19.62523 -18.74277 -18.34775 -17.76122 -16.92045 -15.83071 -15.71147 -15.51096 -15.31842 -14.92142 -14.62745 -14.11137 -13.97117 -13.81325 -13.69965 -12.39090 -12.33137 -11.77371 -11.53151 -11.26554 -11.10974 -11.02702 -10.95017 -10.90611 -10.82157 -10.36335 -10.21230 -10.08391 -10.03361 -9.92268 -9.55413 -9.47821 -9.25536 -8.87697 -8.57968 -6.90588 -5.77434 -3.12391 0.27983 0.62751 2.74231 3.05264 3.38834 3.44932 3.46996 3.63630 3.73640 3.82458 4.36877 4.47842 4.65576 4.74351 5.18889 5.23705 5.33246 5.34287 5.50371 5.76053 5.81360 5.95765 5.96763 6.04751 6.12210 6.23979 6.33608 6.48906 6.51565 6.59374 6.63027 6.77297 6.94973 6.98980 7.27065 7.51766 7.56105 7.70871 7.78617 8.10069 8.26493 9.06527 9.70535 10.52962 11.35024 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.037333 B = 0.003820 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.827542 B = 7328.199421 C = 7717.504548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.214 4.214 8 H 0.078 0.922 9 N -0.588 5.588 10 C 0.160 3.840 11 H 0.142 0.858 12 C -0.132 4.132 13 C -0.133 4.133 14 C 0.128 3.872 15 H 0.087 0.913 16 C 0.125 3.875 17 H 0.086 0.914 18 N -0.683 5.683 19 C 0.560 3.440 20 O -0.527 6.527 21 C 0.139 3.861 22 C -0.172 4.172 23 C 0.148 3.852 24 N -0.512 5.512 25 C 0.292 3.708 26 N -0.496 5.496 27 C -0.142 4.142 28 H 0.254 0.746 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.407 0.593 34 H 0.161 0.839 35 H 0.176 0.824 36 H 0.202 0.798 37 H 0.058 0.942 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 -18.474 -2.996 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.342 4.342 8 H 0.096 0.904 9 N -0.308 5.308 10 C 0.053 3.947 11 H 0.160 0.840 12 C -0.171 4.171 13 C -0.172 4.172 14 C 0.019 3.981 15 H 0.105 0.895 16 C 0.020 3.980 17 H 0.104 0.896 18 N -0.333 5.333 19 C 0.342 3.658 20 O -0.403 6.403 21 C -0.009 4.009 22 C -0.195 4.195 23 C -0.019 4.019 24 N -0.226 5.226 25 C 0.004 3.996 26 N -0.212 5.212 27 C -0.182 4.182 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.244 0.756 34 H 0.179 0.821 35 H 0.193 0.807 36 H 0.218 0.782 37 H 0.076 0.924 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.374 -18.044 -2.961 18.289 hybrid contribution 0.820 0.781 0.075 1.135 sum 0.447 -17.263 -2.887 17.509 Atomic orbital electron populations 1.69662 1.05019 1.25159 1.56671 1.24750 0.95604 0.97615 1.02559 0.86072 0.78751 0.83325 0.77468 1.21704 1.21622 1.20599 1.19032 0.90979 0.82166 1.42067 0.90401 1.46471 1.08528 0.98769 1.77053 1.23332 0.87679 0.95007 0.88705 0.84040 1.22924 0.95537 0.97830 1.00829 1.22934 0.97431 0.97553 0.99319 1.23192 0.96332 0.86363 0.92260 0.89522 1.22877 0.98753 0.76295 1.00080 0.89603 1.46120 1.10076 1.07008 1.70136 1.17799 0.85714 0.83876 0.78370 1.90805 1.20438 1.79422 1.49589 1.21883 0.89428 0.95803 0.93808 1.23027 1.02661 0.94351 0.99466 1.23347 0.93647 0.94694 0.90232 1.68359 1.01779 1.39848 1.12613 1.25006 0.99769 0.83682 0.91117 1.68387 1.21346 1.19378 1.12138 1.23416 0.94871 0.98535 1.01404 0.93620 0.93637 0.92285 0.93143 0.93021 0.75629 0.82136 0.80740 0.78161 0.92350 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.95 10.75 55.49 0.60 -25.35 16 2 C -0.01 -0.25 5.46 -17.43 -0.10 -0.35 16 3 Si 0.91 21.85 29.56 -169.99 -5.03 16.83 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.21 -5.88 10.55 -15.06 -0.16 -6.04 16 8 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 9 N -0.59 -14.55 2.98 -146.08 -0.43 -14.98 16 10 C 0.16 3.55 4.61 -63.05 -0.29 3.26 16 11 H 0.14 3.59 5.88 -51.93 -0.31 3.28 16 12 C -0.13 -2.60 6.42 -24.48 -0.16 -2.76 16 13 C -0.13 -2.52 6.33 -24.23 -0.15 -2.68 16 14 C 0.13 2.67 5.35 -62.80 -0.34 2.34 16 15 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 16 C 0.13 2.30 3.10 -65.10 -0.20 2.10 16 17 H 0.09 1.72 7.71 -51.92 -0.40 1.32 16 18 N -0.68 -10.44 3.63 -51.82 -0.19 -10.63 16 19 C 0.56 8.67 7.83 -12.05 -0.09 8.57 16 20 O -0.53 -9.65 16.16 5.38 0.09 -9.56 16 21 C 0.14 1.76 6.79 -82.63 -0.56 1.20 16 22 C -0.17 -1.76 9.72 -38.90 -0.38 -2.14 16 23 C 0.15 1.24 11.31 -17.20 -0.19 1.04 16 24 N -0.51 -4.95 10.42 -14.60 -0.15 -5.10 16 25 C 0.29 2.77 12.27 -92.26 -1.13 1.64 16 26 N -0.50 -5.72 9.70 -11.14 -0.11 -5.83 16 27 C -0.14 -2.62 6.23 -23.89 -0.15 -2.77 16 28 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.04 0.76 7.80 -51.93 -0.41 0.36 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.05 0.85 6.48 -51.93 -0.34 0.51 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.41 5.59 7.41 -40.82 -0.30 5.29 16 34 H 0.16 1.49 7.74 -52.49 -0.41 1.08 16 35 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.20 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.06 0.91 7.33 -51.93 -0.38 0.53 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 315.69 15.07 4.76 4.76 Total: -1.00 -31.17 315.69 -8.99 -40.17 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -4.62 Total: 6.30 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -3.90 Total: 3.41 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.29 Total: -61.90 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.17 -8.99 -40.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096197839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.723 kcal (2) G-P(sol) polarization free energy of solvation -31.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds