Wall clock time and date at job start Tue Mar 31 2020 06:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46636 * 2 1 4 4 C 1.53002 * 109.46700 * 184.77918 * 3 2 1 5 5 N 1.46499 * 109.47478 * 64.54083 * 4 3 2 6 6 C 1.36699 * 119.99681 * 276.56111 * 5 4 3 7 7 H 1.08003 * 119.99577 * 30.81852 * 6 5 4 8 8 C 1.39132 * 119.99741 * 210.80965 * 6 5 4 9 9 N 1.31304 * 120.00289 * 25.21097 * 8 6 5 10 10 Si 1.86804 * 119.99844 * 205.20876 * 8 6 5 11 11 H 1.48501 * 109.47527 * 94.99907 * 10 8 6 12 12 H 1.48506 * 109.47261 * 215.00104 * 10 8 6 13 13 H 1.48501 * 109.46954 * 334.99737 * 10 8 6 14 14 C 1.34769 * 120.00274 * 96.56491 * 5 4 3 15 15 O 1.21695 * 120.00008 * 196.30360 * 14 5 4 16 16 C 1.46988 * 119.99920 * 16.29788 * 14 5 4 17 17 C 1.37936 * 119.95315 * 132.90187 * 16 14 5 18 18 C 1.39762 * 119.91844 * 179.97438 * 17 16 14 19 19 C 1.36379 * 119.83405 * 359.97438 * 18 17 16 20 20 C 1.40741 * 119.73094 * 0.25836 * 19 18 17 21 21 N 1.32827 * 132.73960 * 180.39470 * 20 19 18 22 22 C 1.32392 * 109.74211 * 179.56843 * 21 20 19 23 23 N 1.31381 * 109.61880 * 359.75008 * 22 21 20 24 24 N 1.36576 * 119.88647 * 359.48407 * 20 19 18 25 25 H 1.08996 * 109.46809 * 299.99773 * 1 2 3 26 26 H 1.08992 * 109.47195 * 60.00231 * 1 2 3 27 27 H 1.08998 * 109.46532 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46809 * 240.00227 * 2 1 3 29 29 H 1.09000 * 109.47018 * 119.99516 * 2 1 3 30 30 H 1.08992 * 109.47387 * 64.77868 * 3 2 1 31 31 H 1.09002 * 109.47045 * 304.77041 * 3 2 1 32 32 H 1.09006 * 109.46900 * 304.53997 * 4 3 2 33 33 H 1.09000 * 109.47203 * 184.54231 * 4 3 2 34 34 H 0.97002 * 120.00204 * 184.96752 * 9 8 6 35 35 H 1.07997 * 120.03853 * 0.02562 * 17 16 14 36 36 H 1.07996 * 120.08473 * 180.02562 * 18 17 16 37 37 H 1.07994 * 120.13355 * 179.97438 * 19 18 17 38 38 H 1.07996 * 125.19179 * 179.72156 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5653 1.4443 -0.1202 5 7 3.9536 0.8859 -1.4178 6 6 4.0429 -0.4685 -1.5798 7 1 3.4021 -1.1240 -1.0088 8 6 4.9592 -1.0023 -2.4805 9 7 6.0384 -0.3251 -2.7982 10 14 4.6542 -2.6825 -3.2377 11 1 3.9904 -2.5184 -4.5559 12 1 5.9494 -3.3859 -3.4198 13 1 3.7804 -3.4791 -2.3392 14 6 4.2228 1.7075 -2.4516 15 8 4.2529 1.2682 -3.5861 16 6 4.4799 3.1343 -2.2088 17 6 5.5603 3.7506 -2.8051 18 6 5.8037 5.1073 -2.5742 19 6 4.9711 5.8171 -1.7601 20 6 3.8748 5.1762 -1.1533 21 7 2.9168 5.6056 -0.3395 22 6 2.0978 4.6074 -0.0470 23 7 2.4953 3.5162 -0.6613 24 7 3.6443 3.8511 -1.3909 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.7482 1.9311 0.9296 31 1 1.6085 1.9805 -0.8442 32 1 3.9933 0.8387 0.6787 33 1 3.9350 2.4665 -0.0392 34 1 6.6405 -0.6637 -3.4792 35 1 6.2167 3.1856 -3.4502 36 1 6.6486 5.5926 -3.0400 37 1 5.1549 6.8656 -1.5780 38 1 1.2349 4.6791 0.5984 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152888721.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:12 Heat of formation + Delta-G solvation = 147.015682 kcal Electronic energy + Delta-G solvation = -24034.080230 eV Core-core repulsion = 20688.789145 eV Total energy + Delta-G solvation = -3345.291085 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.41232 -38.75612 -37.24514 -35.39503 -33.41070 -33.14118 -31.63175 -30.64822 -29.56051 -28.08498 -25.71369 -24.07697 -23.07402 -22.61147 -22.15285 -20.64242 -19.30325 -17.69562 -17.29463 -16.35526 -16.25010 -15.70757 -15.58342 -14.70031 -14.38602 -14.07398 -13.96773 -13.51322 -13.30958 -12.94069 -12.40270 -12.34175 -12.17732 -11.89813 -11.62801 -11.45689 -11.33315 -11.25059 -10.92001 -10.81837 -10.57015 -10.45248 -10.33003 -9.93586 -9.56782 -9.18928 -9.03365 -8.95238 -8.42978 -7.79027 -7.37932 -6.38809 -3.91754 0.82285 1.29950 2.38673 2.96220 3.23892 3.31939 3.35377 3.61399 4.03059 4.24063 4.29228 4.48943 4.80565 5.09264 5.16756 5.22638 5.34406 5.53707 5.58573 5.69298 5.75204 5.81052 6.03131 6.18794 6.21536 6.28626 6.34986 6.46926 6.51173 6.53935 6.58437 6.65104 6.72088 6.83215 7.05385 7.13672 7.32015 7.46835 7.94289 8.26574 8.76391 8.95617 9.40328 9.99802 10.68804 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.015928 B = 0.007990 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.478192 B = 3503.429200 C = 4995.472491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.144 4.144 3 C -0.101 4.101 4 C 0.102 3.898 5 N -0.416 5.416 6 C -0.333 4.333 7 H 0.101 0.899 8 C 0.065 3.935 9 N -0.815 5.815 10 Si 0.909 3.091 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.270 1.270 14 C 0.495 3.505 15 O -0.532 6.532 16 C 0.147 3.853 17 C -0.129 4.129 18 C -0.053 4.053 19 C -0.129 4.129 20 C 0.275 3.725 21 N -0.559 5.559 22 C 0.210 3.790 23 N -0.312 5.312 24 N -0.279 5.279 25 H 0.042 0.958 26 H 0.048 0.952 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.270 0.730 35 H 0.164 0.836 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.346 7.989 4.128 9.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C -0.141 4.141 4 C -0.022 4.022 5 N -0.134 5.134 6 C -0.459 4.459 7 H 0.119 0.881 8 C -0.147 4.147 9 N -0.449 5.449 10 Si 0.735 3.265 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.195 1.195 14 C 0.282 3.718 15 O -0.411 6.411 16 C 0.034 3.966 17 C -0.153 4.153 18 C -0.078 4.078 19 C -0.151 4.151 20 C 0.023 3.977 21 N -0.290 5.290 22 C -0.089 4.089 23 N -0.142 5.142 24 N -0.055 5.055 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.181 0.819 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.701 7.368 3.813 8.725 hybrid contribution 0.130 -0.606 -0.279 0.679 sum -2.571 6.763 3.534 8.052 Atomic orbital electron populations 1.21733 0.97310 1.00423 1.00728 1.22016 0.94409 0.98619 1.03142 1.22062 0.95592 0.94626 1.01800 1.21959 0.95461 0.97587 0.87196 1.43272 1.57590 1.05722 1.06862 1.19453 1.18701 0.80357 1.27373 0.88125 1.25121 0.92666 0.99042 0.97843 1.69833 1.08130 1.40432 1.26507 0.86216 0.77812 0.82101 0.80328 1.20112 1.21183 1.19508 1.16696 0.87181 0.81917 0.86000 1.90671 1.54801 1.74319 1.21356 1.21553 0.90086 0.95056 0.89893 1.21298 0.96858 0.94868 1.02241 1.21166 0.98188 0.93395 0.95076 1.20207 0.93401 1.01162 1.00331 1.21873 0.96658 0.83321 0.95836 1.70753 1.06755 1.30676 1.20836 1.26317 0.98676 0.86068 0.97875 1.80086 0.99050 1.18981 1.16069 1.48709 1.18693 1.08823 1.29318 0.93848 0.93259 0.93704 0.89148 0.93408 0.93535 0.88857 0.92784 0.92186 0.91900 0.81899 0.83430 0.83248 0.76748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.91 37.16 0.37 -1.82 16 2 C -0.14 -2.59 5.23 -26.72 -0.14 -2.73 16 3 C -0.10 -1.86 3.66 -26.73 -0.10 -1.96 16 4 C 0.10 2.16 5.07 -4.04 -0.02 2.14 16 5 N -0.42 -10.32 2.55 -116.20 -0.30 -10.62 16 6 C -0.33 -8.71 8.08 -15.05 -0.12 -8.83 16 7 H 0.10 2.50 5.64 -52.48 -0.30 2.20 16 8 C 0.07 1.74 4.20 -17.45 -0.07 1.67 16 9 N -0.82 -22.60 11.55 55.50 0.64 -21.96 16 10 Si 0.91 21.00 29.63 -169.99 -5.04 15.96 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 14 C 0.50 12.62 6.16 -12.72 -0.08 12.54 16 15 O -0.53 -15.37 14.80 5.19 0.08 -15.30 16 16 C 0.15 3.12 5.96 -82.05 -0.49 2.63 16 17 C -0.13 -2.28 9.67 -39.12 -0.38 -2.65 16 18 C -0.05 -0.70 10.04 -39.68 -0.40 -1.10 16 19 C -0.13 -1.80 10.09 -39.31 -0.40 -2.19 16 20 C 0.28 4.80 7.88 -156.36 -1.23 3.57 16 21 N -0.56 -9.56 11.24 -13.99 -0.16 -9.71 16 22 C 0.21 3.31 12.98 -91.99 -1.19 2.11 16 23 N -0.31 -5.73 4.72 29.25 0.14 -5.59 16 24 N -0.28 -5.46 2.80 -8.82 -0.02 -5.49 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.90 4.98 -51.93 -0.26 1.64 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.75 8.02 -51.93 -0.42 0.34 16 31 H 0.09 1.86 5.89 -55.81 -0.33 1.53 16 32 H 0.05 1.13 8.09 -51.93 -0.42 0.71 16 33 H 0.06 1.27 4.30 -51.93 -0.22 1.05 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.16 2.90 8.06 -52.49 -0.42 2.48 16 36 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.22 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 307.56 15.07 4.63 4.63 Total: -1.00 -31.86 307.56 -8.73 -40.59 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.46 Total: 4.09 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -4.25 Total: 3.39 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.30 Total: -53.38 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.08 Total: -15.30 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.04 Total: 15.96 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.86 -8.73 -40.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152888721.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.607 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds