Wall clock time and date at job start Tue Mar 31 2020 06:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47101 * 2 1 4 4 C 1.53000 * 109.46864 * 119.99827 * 2 1 3 5 5 N 1.46499 * 109.47203 * 174.99746 * 4 2 1 6 6 C 1.34861 * 125.90083 * 124.99915 * 5 4 2 7 7 C 1.36414 * 107.61088 * 179.97438 * 6 5 4 8 8 C 1.48502 * 126.21803 * 179.97438 * 7 6 5 9 9 C 1.39533 * 120.01280 * 310.02542 * 8 7 6 10 10 C 1.38494 * 120.42725 * 179.97438 * 9 8 7 11 11 C 1.37637 * 120.44290 * 359.73968 * 10 9 8 12 12 C 1.40765 * 120.00385 * 0.51521 * 11 10 9 13 13 C 1.41316 * 120.20734 * 179.76415 * 12 11 10 14 14 H 1.08002 * 120.00256 * 149.93532 * 13 12 11 15 15 C 1.39930 * 120.00396 * 330.20940 * 13 12 11 16 16 N 1.30848 * 120.00226 * 161.54430 * 15 13 12 17 17 Si 1.86805 * 119.99706 * 341.55473 * 15 13 12 18 18 H 1.48496 * 109.47439 * 95.40223 * 17 15 13 19 19 H 1.48504 * 109.46675 * 215.40598 * 17 15 13 20 20 H 1.48505 * 109.46712 * 335.40106 * 17 15 13 21 21 C 1.39004 * 120.01101 * 130.00215 * 8 7 6 22 22 F 1.35098 * 120.21690 * 0.04272 * 21 8 7 23 23 C 1.40831 * 107.56204 * 0.23030 * 7 6 5 24 24 N 1.30676 * 108.10231 * 359.61168 * 23 7 6 25 25 H 1.09005 * 109.47078 * 300.00209 * 1 2 3 26 26 H 1.08999 * 109.46602 * 60.00034 * 1 2 3 27 27 H 1.08994 * 109.47205 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47012 * 239.99597 * 2 1 3 29 29 H 1.08996 * 109.47517 * 59.99906 * 3 2 1 30 30 H 1.09001 * 109.46914 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47365 * 299.99499 * 3 2 1 32 32 H 1.09006 * 109.47108 * 54.99665 * 4 2 1 33 33 H 1.09001 * 109.47241 * 294.99895 * 4 2 1 34 34 H 1.08007 * 126.19744 * 359.94578 * 6 5 4 35 35 H 1.08000 * 119.78476 * 359.95444 * 9 8 7 36 36 H 1.08003 * 119.77572 * 179.97438 * 10 9 8 37 37 H 1.08003 * 119.99900 * 180.27455 * 11 10 9 38 38 H 0.97000 * 120.00237 * 180.02562 * 16 15 13 39 39 H 1.08001 * 125.94254 * 179.74865 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.3624 -0.3956 2.1337 7 6 5.6241 -0.6802 1.7002 8 6 6.8878 -0.3819 2.4209 9 6 7.1180 0.8986 2.9252 10 6 8.2932 1.1861 3.5992 11 6 9.2470 0.2113 3.7850 12 6 9.0361 -1.0853 3.2793 13 6 10.0147 -2.0881 3.4633 14 1 9.7188 -3.1240 3.5391 15 6 11.3667 -1.7384 3.5529 16 7 12.2263 -2.5771 4.0724 17 14 11.9441 -0.0742 2.9313 18 1 11.9950 0.8864 4.0626 19 1 13.2979 -0.2106 2.3364 20 1 10.9985 0.4245 1.9006 21 6 7.8414 -1.3783 2.5938 22 9 7.6237 -2.6197 2.1072 23 6 5.5108 -1.3031 0.4422 24 7 4.2411 -1.3922 0.1462 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 4.1015 0.0878 3.0636 35 1 6.3751 1.6705 2.7888 36 1 8.4607 2.1810 3.9849 37 1 10.1589 0.4423 4.3156 38 1 13.1634 -2.3345 4.1349 39 1 6.3304 -1.6490 -0.1701 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240887336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:21 Heat of formation + Delta-G solvation = 32.359893 kcal Electronic energy + Delta-G solvation = -22057.177095 eV Core-core repulsion = 18686.994200 eV Total energy + Delta-G solvation = -3370.182895 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -47.30026 -40.86964 -37.52767 -36.54086 -33.80695 -32.08413 -31.21385 -29.91116 -28.25611 -27.43309 -25.98487 -25.17053 -22.21318 -21.48067 -20.65165 -20.03924 -19.51540 -17.53724 -16.72076 -16.29961 -15.66746 -15.21894 -14.78472 -14.74260 -14.37153 -14.09331 -13.93119 -13.47981 -13.34440 -12.97856 -12.82774 -12.61071 -12.47862 -12.20518 -12.01069 -11.95078 -11.50938 -11.42441 -11.25550 -11.17039 -10.96278 -10.82014 -10.36960 -10.28912 -9.91136 -9.73749 -9.22025 -9.11186 -8.43861 -7.61558 -7.21769 -7.00388 -4.52887 2.02181 2.41618 2.48049 2.69213 3.07059 3.18135 3.26767 3.34582 3.94246 4.31850 4.41296 4.56799 4.74416 4.93815 5.10729 5.18461 5.25505 5.29843 5.36035 5.42441 5.57335 5.62722 5.70743 5.74188 5.79700 5.92678 6.03400 6.04010 6.12931 6.27779 6.33126 6.49186 6.78300 6.94092 7.06137 7.24823 7.35969 7.44731 7.59596 7.71995 7.94929 8.02038 8.30268 8.54287 8.70013 10.01522 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.035274 B = 0.003722 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.593896 B = 7521.341631 C = 7917.947570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.146 4.146 4 C 0.141 3.859 5 N -0.375 5.375 6 C 0.057 3.943 7 C -0.174 4.174 8 C -0.010 4.010 9 C -0.211 4.211 10 C -0.084 4.084 11 C -0.223 4.223 12 C 0.068 3.932 13 C -0.439 4.439 14 H 0.094 0.906 15 C 0.085 3.915 16 N -0.802 5.802 17 Si 0.911 3.089 18 H -0.268 1.268 19 H -0.289 1.289 20 H -0.242 1.242 21 C 0.004 3.996 22 F -0.152 7.152 23 C 0.068 3.932 24 N -0.303 5.303 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.171 0.829 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.287 0.713 39 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.341 7.309 -4.354 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.204 4.204 4 C 0.020 3.980 5 N -0.157 5.157 6 C -0.088 4.088 7 C -0.185 4.185 8 C -0.012 4.012 9 C -0.231 4.231 10 C -0.103 4.103 11 C -0.243 4.243 12 C 0.064 3.936 13 C -0.467 4.467 14 H 0.112 0.888 15 C -0.135 4.135 16 N -0.425 5.425 17 Si 0.737 3.263 18 H -0.194 1.194 19 H -0.216 1.216 20 H -0.165 1.165 21 C -0.016 4.016 22 F -0.131 7.131 23 C -0.118 4.118 24 N -0.124 5.124 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.188 0.812 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -17.118 6.729 -5.137 19.097 hybrid contribution 1.064 0.673 0.486 1.350 sum -16.053 7.402 -4.651 18.279 Atomic orbital electron populations 1.21788 0.94197 1.02064 1.02233 1.21420 0.95848 0.97012 0.98555 1.21811 1.01762 0.95166 1.01617 1.21738 0.75125 1.01653 0.99492 1.48354 1.05913 1.46619 1.14848 1.22441 0.89509 1.01364 0.95478 1.18932 0.92544 1.09927 0.97101 1.17691 0.90909 0.93403 0.99230 1.20206 0.99195 0.94845 1.08836 1.20544 0.94038 0.97538 0.98159 1.20876 1.00734 0.94354 1.08330 1.17633 0.91909 0.93197 0.90822 1.19404 0.90149 0.96053 1.41058 0.88755 1.26158 0.96638 0.99085 0.91590 1.69696 1.04884 1.37252 1.30697 0.86310 0.77775 0.81241 0.80996 1.19438 1.21636 1.16505 1.17738 0.98064 0.79953 1.05855 1.91306 1.95031 1.40228 1.86510 1.23978 0.93988 0.97970 0.95892 1.77115 1.04200 1.20503 1.10537 0.92466 0.92074 0.92365 0.89609 0.92775 0.92337 0.92529 0.90155 0.88991 0.81177 0.88132 0.88238 0.87565 0.90263 0.80179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.19 37.16 0.34 -0.62 16 2 C -0.11 -1.00 3.00 -90.62 -0.27 -1.27 16 3 C -0.15 -1.38 9.08 37.16 0.34 -1.05 16 4 C 0.14 1.41 5.89 -4.04 -0.02 1.38 16 5 N -0.38 -5.35 3.12 -61.09 -0.19 -5.54 16 6 C 0.06 0.88 11.31 -16.88 -0.19 0.69 16 7 C -0.17 -3.24 5.35 -105.34 -0.56 -3.80 16 8 C -0.01 -0.21 5.75 -104.90 -0.60 -0.82 16 9 C -0.21 -4.19 9.70 -39.00 -0.38 -4.57 16 10 C -0.08 -1.73 10.01 -39.71 -0.40 -2.13 16 11 C -0.22 -5.23 7.17 -38.85 -0.28 -5.51 16 12 C 0.07 1.74 5.11 -106.80 -0.55 1.19 16 13 C -0.44 -12.03 9.26 -37.78 -0.35 -12.38 16 14 H 0.09 2.77 7.97 -52.49 -0.42 2.35 16 15 C 0.08 2.22 5.40 -17.34 -0.09 2.13 16 16 N -0.80 -21.28 13.93 55.55 0.77 -20.51 16 17 Si 0.91 20.42 24.52 -169.99 -4.17 16.25 16 18 H -0.27 -5.74 6.70 56.52 0.38 -5.36 16 19 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.24 -5.55 6.87 56.52 0.39 -5.16 16 21 C 0.00 0.11 7.25 -38.32 -0.28 -0.17 16 22 F -0.15 -3.77 15.88 2.25 0.04 -3.73 16 23 C 0.07 1.23 11.43 -17.06 -0.20 1.04 16 24 N -0.30 -5.11 12.30 30.80 0.38 -4.73 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.95 8.05 -51.93 -0.42 0.53 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.71 7.75 -51.93 -0.40 0.30 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.70 8.07 -51.93 -0.42 0.29 16 34 H 0.17 2.12 8.06 -52.48 -0.42 1.70 16 35 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 36 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.11 2.45 4.73 -52.48 -0.25 2.20 16 38 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 39 H 0.18 3.11 8.06 -52.49 -0.42 2.68 16 LS Contribution 331.28 15.07 4.99 4.99 Total: -1.00 -29.16 331.28 -6.97 -36.13 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.30 Total: 3.02 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: -3.49 Total: -25.88 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.96 Total: -30.78 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.04 Total: -3.73 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.17 Total: 16.25 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.16 -6.97 -36.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240887336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.492 kcal (2) G-P(sol) polarization free energy of solvation -29.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds