Wall clock time and date at job start Tue Mar 31 2020 06:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47101 * 2 1 4 4 C 1.53000 * 109.46864 * 119.99827 * 2 1 3 5 5 N 1.46499 * 109.47203 * 174.99746 * 4 2 1 6 6 C 1.34861 * 125.90083 * 124.99915 * 5 4 2 7 7 C 1.36414 * 107.61088 * 179.97438 * 6 5 4 8 8 C 1.48502 * 126.21803 * 179.97438 * 7 6 5 9 9 C 1.39533 * 120.01280 * 310.02542 * 8 7 6 10 10 C 1.38494 * 120.42725 * 179.97438 * 9 8 7 11 11 C 1.37637 * 120.44290 * 359.73968 * 10 9 8 12 12 C 1.40765 * 120.00385 * 0.51521 * 11 10 9 13 13 C 1.41316 * 120.20734 * 179.76415 * 12 11 10 14 14 H 1.08002 * 120.00256 * 149.93532 * 13 12 11 15 15 C 1.39930 * 120.00396 * 330.20940 * 13 12 11 16 16 N 1.30848 * 120.00226 * 161.54430 * 15 13 12 17 17 Si 1.86805 * 119.99706 * 341.55473 * 15 13 12 18 18 H 1.48496 * 109.47439 * 95.40223 * 17 15 13 19 19 H 1.48504 * 109.46675 * 215.40598 * 17 15 13 20 20 H 1.48505 * 109.46712 * 335.40106 * 17 15 13 21 21 C 1.39004 * 120.01101 * 130.00215 * 8 7 6 22 22 F 1.35098 * 120.21690 * 0.04272 * 21 8 7 23 23 C 1.40831 * 107.56204 * 0.23030 * 7 6 5 24 24 N 1.30676 * 108.10231 * 359.61168 * 23 7 6 25 25 H 1.09005 * 109.47078 * 300.00209 * 1 2 3 26 26 H 1.08999 * 109.46602 * 60.00034 * 1 2 3 27 27 H 1.08994 * 109.47205 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47012 * 239.99597 * 2 1 3 29 29 H 1.08996 * 109.47517 * 59.99906 * 3 2 1 30 30 H 1.09001 * 109.46914 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47365 * 299.99499 * 3 2 1 32 32 H 1.09006 * 109.47108 * 54.99665 * 4 2 1 33 33 H 1.09001 * 109.47241 * 294.99895 * 4 2 1 34 34 H 1.08007 * 126.19744 * 359.94578 * 6 5 4 35 35 H 1.08000 * 119.78476 * 359.95444 * 9 8 7 36 36 H 1.08003 * 119.77572 * 179.97438 * 10 9 8 37 37 H 1.08003 * 119.99900 * 180.27455 * 11 10 9 38 38 H 0.97000 * 120.00237 * 180.02562 * 16 15 13 39 39 H 1.08001 * 125.94254 * 179.74865 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.3624 -0.3956 2.1337 7 6 5.6241 -0.6802 1.7002 8 6 6.8878 -0.3819 2.4209 9 6 7.1180 0.8986 2.9252 10 6 8.2932 1.1861 3.5992 11 6 9.2470 0.2113 3.7850 12 6 9.0361 -1.0853 3.2793 13 6 10.0147 -2.0881 3.4633 14 1 9.7188 -3.1240 3.5391 15 6 11.3667 -1.7384 3.5529 16 7 12.2263 -2.5771 4.0724 17 14 11.9441 -0.0742 2.9313 18 1 11.9950 0.8864 4.0626 19 1 13.2979 -0.2106 2.3364 20 1 10.9985 0.4245 1.9006 21 6 7.8414 -1.3783 2.5938 22 9 7.6237 -2.6197 2.1072 23 6 5.5108 -1.3031 0.4422 24 7 4.2411 -1.3922 0.1462 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 4.1015 0.0878 3.0636 35 1 6.3751 1.6705 2.7888 36 1 8.4607 2.1810 3.9849 37 1 10.1589 0.4423 4.3156 38 1 13.1634 -2.3345 4.1349 39 1 6.3304 -1.6490 -0.1701 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240887336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:20 Heat of formation + Delta-G solvation = 16.703543 kcal Electronic energy + Delta-G solvation = -22057.856006 eV Core-core repulsion = 18686.994200 eV Total energy + Delta-G solvation = -3370.861805 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.19752 -42.12180 -39.25210 -37.37585 -35.65544 -33.43628 -32.63182 -31.62207 -29.65006 -28.06963 -27.10258 -26.98258 -23.79332 -22.77504 -22.09176 -21.43531 -20.62112 -19.20347 -18.31443 -17.80419 -17.09157 -16.68919 -16.40246 -16.03712 -15.77463 -15.45144 -15.36456 -15.01734 -14.53958 -14.45490 -13.95659 -13.81947 -13.74056 -13.67907 -13.34384 -13.12227 -12.90930 -12.76842 -12.63146 -12.18241 -12.09008 -11.94985 -11.88270 -11.74804 -11.59342 -11.45987 -10.99492 -10.33240 -9.94344 -9.41716 -8.92540 -8.78623 -6.53806 0.49512 0.70537 0.99989 1.26625 1.41846 1.50583 1.62758 1.86908 2.12733 2.57926 3.36011 3.48018 3.85980 3.88853 3.97641 3.98836 4.12906 4.29485 4.36053 4.40090 4.53195 4.63750 4.65687 4.75164 4.79462 4.80920 4.91551 4.95456 5.00228 5.04711 5.20589 5.24723 5.34244 5.40498 5.55466 5.62510 5.70019 5.83394 5.93043 6.09064 6.16855 6.33770 6.65529 6.71742 6.75195 8.16717 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.035274 B = 0.003722 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.593896 B = 7521.341631 C = 7917.947570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C -0.143 4.143 4 C 0.128 3.872 5 N -0.362 5.362 6 C 0.083 3.917 7 C -0.216 4.216 8 C -0.001 4.001 9 C -0.187 4.187 10 C -0.079 4.079 11 C -0.232 4.232 12 C 0.049 3.951 13 C -0.485 4.485 14 H 0.046 0.954 15 C 0.047 3.953 16 N -0.848 5.848 17 Si 0.968 3.032 18 H -0.244 1.244 19 H -0.277 1.277 20 H -0.251 1.251 21 C -0.031 4.031 22 F -0.167 7.167 23 C 0.051 3.949 24 N -0.317 5.317 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.029 0.971 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.128 0.872 34 H 0.210 0.790 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.109 0.891 38 H 0.296 0.704 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.447 11.219 -3.924 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 C -0.200 4.200 4 C 0.009 3.991 5 N -0.143 5.143 6 C -0.065 4.065 7 C -0.227 4.227 8 C -0.003 4.003 9 C -0.206 4.206 10 C -0.097 4.097 11 C -0.251 4.251 12 C 0.046 3.954 13 C -0.515 4.515 14 H 0.064 0.936 15 C -0.168 4.168 16 N -0.474 5.474 17 Si 0.790 3.210 18 H -0.169 1.169 19 H -0.204 1.204 20 H -0.175 1.175 21 C -0.051 4.051 22 F -0.146 7.146 23 C -0.135 4.135 24 N -0.139 5.139 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.146 0.854 34 H 0.226 0.774 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -20.257 10.629 -4.718 23.358 hybrid contribution 1.651 -0.475 0.301 1.744 sum -18.605 10.155 -4.417 21.652 Atomic orbital electron populations 1.21744 0.91898 1.02737 1.03275 1.21360 0.97605 0.96387 0.97019 1.21789 0.99800 0.95577 1.02881 1.22255 0.72349 1.03063 1.01435 1.48751 1.07449 1.44527 1.13569 1.22892 0.88268 0.99251 0.96067 1.18907 0.92886 1.13110 0.97795 1.17984 0.91137 0.93070 0.98098 1.20779 0.99401 0.94706 1.05698 1.21036 0.92998 0.98728 0.96976 1.21058 1.01845 0.93941 1.08245 1.17811 0.92046 0.94063 0.91497 1.19290 0.92059 0.94495 1.45608 0.93612 1.26903 0.95984 1.02654 0.91228 1.69728 1.05595 1.39335 1.32765 0.85455 0.77373 0.77401 0.80772 1.16862 1.20380 1.17470 1.18186 0.99244 0.80437 1.07235 1.91254 1.95140 1.41352 1.86857 1.23951 0.94475 0.98692 0.96349 1.77079 1.03833 1.21101 1.11856 0.90751 0.91731 0.91933 0.92220 0.90861 0.95201 0.92026 0.89250 0.85437 0.77388 0.83895 0.83751 0.87362 0.89359 0.81062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.19 71.98 0.66 -0.67 16 2 C -0.10 -1.60 3.00 -10.79 -0.03 -1.63 16 3 C -0.14 -2.25 9.08 71.98 0.65 -1.60 16 4 C 0.13 2.06 5.89 86.38 0.51 2.57 16 5 N -0.36 -9.30 3.12 -347.20 -1.08 -10.39 16 6 C 0.08 2.24 11.31 83.80 0.95 3.18 16 7 C -0.22 -7.68 5.35 -20.33 -0.11 -7.79 16 8 C 0.00 -0.03 5.75 -20.04 -0.12 -0.14 16 9 C -0.19 -6.60 9.70 22.64 0.22 -6.38 16 10 C -0.08 -2.93 10.01 22.19 0.22 -2.71 16 11 C -0.23 -10.53 7.17 22.75 0.16 -10.37 16 12 C 0.05 2.58 5.11 -21.27 -0.11 2.47 16 13 C -0.49 -28.63 9.26 23.44 0.22 -28.42 16 14 H 0.05 3.00 7.97 -2.91 -0.02 2.98 16 15 C 0.05 2.57 5.40 85.25 0.46 3.03 16 16 N -0.85 -47.62 13.93 21.83 0.30 -47.32 16 17 Si 0.97 42.41 24.52 68.60 1.68 44.09 16 18 H -0.24 -9.65 6.70 99.48 0.67 -8.98 16 19 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 20 H -0.25 -11.22 6.87 99.48 0.68 -10.53 16 21 C -0.03 -1.54 7.25 23.09 0.17 -1.37 16 22 F -0.17 -8.85 15.88 44.97 0.71 -8.14 16 23 C 0.05 1.85 11.43 85.50 0.98 2.82 16 24 N -0.32 -10.47 12.30 -56.47 -0.69 -11.16 16 25 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 26 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 1.24 8.05 -2.39 -0.02 1.22 16 29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.03 0.64 7.75 -2.39 -0.02 0.62 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.13 1.21 8.07 -2.39 -0.02 1.19 16 34 H 0.21 3.93 8.06 -2.91 -0.02 3.91 16 35 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 36 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 37 H 0.11 4.83 4.73 -2.91 -0.01 4.81 16 38 H 0.30 14.75 8.30 -92.71 -0.77 13.98 16 39 H 0.17 6.27 8.06 -2.91 -0.02 6.24 16 Total: -1.00 -69.32 331.28 6.74 -62.58 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.98 Total: 17.33 kcal Atomic # 6 Polarization: -51.84 SS G_CDS: 4.83 Total: -47.01 kcal Atomic # 7 Polarization: -67.39 SS G_CDS: -1.47 Total: -68.86 kcal Atomic # 9 Polarization: -8.85 SS G_CDS: 0.71 Total: -8.14 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.68 Total: 44.09 kcal Total: -69.32 6.74 -62.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240887336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.287 kcal (2) G-P(sol) polarization free energy of solvation -69.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds