Wall clock time and date at job start Tue Mar 31 2020 06:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47298 * 2 1 4 4 C 1.53006 * 109.47048 * 119.99734 * 2 1 3 5 5 N 1.46499 * 109.46955 * 175.00213 * 4 2 1 6 6 C 1.34704 * 125.81385 * 125.00334 * 5 4 2 7 7 C 1.37881 * 107.39016 * 179.70108 * 6 5 4 8 8 C 1.47914 * 126.37301 * 180.28635 * 7 6 5 9 9 C 1.39064 * 120.31571 * 309.71801 * 8 7 6 10 10 C 1.38348 * 119.95680 * 179.74097 * 9 8 7 11 11 F 1.35102 * 119.69513 * 180.23120 * 10 9 8 12 12 C 1.39239 * 120.61261 * 0.52138 * 10 9 8 13 13 C 1.36333 * 120.65440 * 359.75621 * 12 10 9 14 14 C 1.40784 * 120.01309 * 359.97438 * 13 12 10 15 15 C 1.40831 * 120.30137 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00483 * 153.36326 * 15 14 13 17 17 C 1.39980 * 120.00358 * 333.36910 * 15 14 13 18 18 N 1.30852 * 119.99581 * 343.99967 * 17 15 14 19 19 Si 1.86799 * 120.00647 * 163.99770 * 17 15 14 20 20 H 1.48498 * 109.46904 * 89.99804 * 19 17 15 21 21 H 1.48490 * 109.47241 * 210.00064 * 19 17 15 22 22 H 1.48500 * 109.46933 * 330.00592 * 19 17 15 23 23 C 1.41119 * 107.25902 * 0.25941 * 7 6 5 24 24 N 1.30555 * 108.11811 * 0.02562 * 23 7 6 25 25 H 1.09006 * 109.47306 * 299.99808 * 1 2 3 26 26 H 1.08998 * 109.47534 * 60.00173 * 1 2 3 27 27 H 1.09004 * 109.47133 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47424 * 239.99785 * 2 1 3 29 29 H 1.08998 * 109.46687 * 300.00345 * 3 2 1 30 30 H 1.09006 * 109.46786 * 59.99874 * 3 2 1 31 31 H 1.08995 * 109.46855 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47193 * 55.00093 * 4 2 1 33 33 H 1.09000 * 109.47359 * 295.00197 * 4 2 1 34 34 H 1.08004 * 126.30482 * 359.96209 * 6 5 4 35 35 H 1.07995 * 120.02415 * 0.02562 * 9 8 7 36 36 H 1.08004 * 119.67324 * 179.73431 * 12 10 9 37 37 H 1.08002 * 119.99300 * 179.97438 * 13 12 10 38 38 H 0.96995 * 119.99960 * 180.02562 * 18 17 15 39 39 H 1.08000 * 125.94418 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.3598 -0.3953 2.1338 7 6 5.6336 -0.6897 1.6957 8 6 6.8956 -0.4033 2.4119 9 6 7.1446 0.8694 2.9141 10 6 8.3252 1.1276 3.5875 11 9 8.5595 2.3647 4.0772 12 6 9.2768 0.1259 3.7600 13 6 9.0610 -1.1291 3.2730 14 6 7.8666 -1.4231 2.5884 15 6 7.6377 -2.7173 2.0824 16 1 6.6271 -3.0765 1.9551 17 6 8.7199 -3.5383 1.7444 18 7 9.9124 -3.0205 1.5959 19 14 8.4619 -5.3728 1.5055 20 1 8.1314 -5.6451 0.0836 21 1 9.7037 -6.0994 1.8729 22 1 7.3452 -5.8323 2.3698 23 6 5.5092 -1.3157 0.4370 24 7 4.2391 -1.3888 0.1437 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6053 -1.7198 1.2953 33 1 1.7516 -0.1583 2.1371 34 1 4.0992 0.0878 3.0639 35 1 6.4148 1.6545 2.7825 36 1 10.1951 0.3454 4.2844 37 1 9.8067 -1.8979 3.4126 38 1 10.6623 -3.5893 1.3613 39 1 6.3231 -1.6723 -0.1768 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240887492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:01 Heat of formation + Delta-G solvation = 28.518383 kcal Electronic energy + Delta-G solvation = -22187.698396 eV Core-core repulsion = 18817.348920 eV Total energy + Delta-G solvation = -3370.349475 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -47.44596 -40.45456 -37.41195 -36.27708 -33.64643 -31.82591 -30.75404 -29.43117 -28.07938 -27.28533 -25.86612 -24.91782 -21.79175 -21.31480 -20.71495 -19.68831 -19.04593 -17.42198 -16.77934 -15.78032 -15.37410 -15.24899 -14.61957 -14.43026 -14.19768 -14.04558 -14.03216 -13.25094 -12.98737 -12.80280 -12.54288 -12.35072 -12.16050 -12.03306 -11.93573 -11.87055 -11.30188 -11.18344 -11.10466 -11.07185 -10.86679 -10.85625 -10.39436 -10.06621 -9.94290 -9.47846 -9.20444 -8.74038 -8.11917 -7.38667 -7.10792 -6.81481 -4.38734 2.35044 2.66028 2.80286 3.02534 3.04038 3.07078 3.13272 3.73826 3.87429 4.48885 4.54037 4.74168 4.91972 5.14382 5.33460 5.42770 5.49483 5.51603 5.56233 5.68780 5.72624 5.80175 5.88727 5.93046 6.10227 6.14838 6.20302 6.21345 6.43116 6.63973 6.67092 6.96095 7.06027 7.14986 7.34606 7.43399 7.60689 7.74761 7.84881 7.96550 8.15729 8.41997 8.50292 8.76553 8.84601 10.07096 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.012819 B = 0.005571 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.733832 B = 5024.919275 C = 6931.366147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.145 4.145 4 C 0.145 3.855 5 N -0.378 5.378 6 C 0.026 3.974 7 C -0.131 4.131 8 C -0.117 4.117 9 C -0.103 4.103 10 C -0.048 4.048 11 F -0.176 7.176 12 C -0.128 4.128 13 C -0.137 4.137 14 C 0.119 3.881 15 C -0.440 4.440 16 H 0.084 0.916 17 C 0.076 3.924 18 N -0.788 5.788 19 Si 0.906 3.094 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.261 1.261 23 C 0.075 3.925 24 N -0.315 5.315 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.164 0.836 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.283 0.717 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.821 2.226 -1.109 12.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 C -0.203 4.203 4 C 0.023 3.977 5 N -0.161 5.161 6 C -0.118 4.118 7 C -0.142 4.142 8 C -0.120 4.120 9 C -0.123 4.123 10 C -0.068 4.068 11 F -0.155 7.155 12 C -0.148 4.148 13 C -0.157 4.157 14 C 0.116 3.884 15 C -0.469 4.469 16 H 0.102 0.898 17 C -0.143 4.143 18 N -0.413 5.413 19 Si 0.730 3.270 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.185 1.185 23 C -0.111 4.111 24 N -0.137 5.137 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.181 0.819 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.094 0.906 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -12.584 1.826 -2.008 12.873 hybrid contribution 0.732 -0.318 0.617 1.009 sum -11.851 1.508 -1.391 12.027 Atomic orbital electron populations 1.21788 0.94471 1.01928 1.02063 1.21416 0.95587 0.97010 0.98805 1.21800 1.01892 0.95191 1.01367 1.21627 0.75806 1.01228 0.99084 1.48121 1.05464 1.47378 1.15120 1.22767 0.89948 1.03505 0.95596 1.18991 0.91689 1.07380 0.96143 1.17715 0.95339 0.92222 1.06696 1.20495 0.95430 0.96478 0.99851 1.17183 0.98524 0.80280 1.10803 1.91277 1.95262 1.41512 1.87479 1.20458 0.97590 0.93992 1.02722 1.20900 0.99654 0.95199 0.99925 1.17575 0.90088 0.91945 0.88755 1.19518 0.94048 0.97382 1.35975 0.89804 1.25956 0.94530 1.00985 0.92835 1.69809 1.00970 1.37713 1.32782 0.86332 0.79030 0.81935 0.79712 1.19287 1.20065 1.18457 1.24042 0.93320 0.97599 0.96111 1.76977 1.04767 1.21377 1.10542 0.92577 0.92222 0.92457 0.89636 0.92714 0.92925 0.92223 0.90547 0.89402 0.81914 0.88298 0.88376 0.85661 0.90605 0.80069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.19 37.15 0.34 -0.82 16 2 C -0.11 -1.18 3.00 -90.62 -0.27 -1.45 16 3 C -0.15 -1.62 9.08 37.16 0.34 -1.28 16 4 C 0.14 1.71 5.89 -4.04 -0.02 1.68 16 5 N -0.38 -6.16 3.12 -60.74 -0.19 -6.35 16 6 C 0.03 0.46 11.40 -16.42 -0.19 0.27 16 7 C -0.13 -2.72 4.97 -104.97 -0.52 -3.24 16 8 C -0.12 -2.70 5.81 -104.23 -0.61 -3.31 16 9 C -0.10 -2.32 9.68 -39.23 -0.38 -2.70 16 10 C -0.05 -1.12 7.31 -39.17 -0.29 -1.41 16 11 F -0.18 -3.97 17.26 2.25 0.04 -3.93 16 12 C -0.13 -3.00 9.94 -39.90 -0.40 -3.40 16 13 C -0.14 -3.39 8.61 -39.31 -0.34 -3.73 16 14 C 0.12 2.97 5.58 -106.55 -0.59 2.37 16 15 C -0.44 -10.80 7.73 -37.95 -0.29 -11.09 16 16 H 0.08 2.06 6.70 -52.48 -0.35 1.71 16 17 C 0.08 1.78 5.16 -17.32 -0.09 1.69 16 18 N -0.79 -19.07 10.99 55.55 0.61 -18.46 16 19 Si 0.91 17.96 29.59 -169.99 -5.03 12.93 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 23 C 0.08 1.53 10.37 -17.00 -0.18 1.36 16 24 N -0.32 -5.98 12.25 30.84 0.38 -5.60 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 1.09 8.04 -51.93 -0.42 0.68 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.83 7.75 -51.93 -0.40 0.43 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.09 0.85 8.06 -51.93 -0.42 0.43 16 34 H 0.16 2.43 8.06 -52.48 -0.42 2.01 16 35 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 36 H 0.10 2.09 8.06 -52.48 -0.42 1.66 16 37 H 0.13 3.14 6.24 -52.49 -0.33 2.81 16 38 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 39 H 0.18 3.70 7.94 -52.49 -0.42 3.28 16 LS Contribution 334.28 15.07 5.04 5.04 Total: -1.00 -26.97 334.28 -7.91 -34.88 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -5.27 Total: 6.55 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -3.48 Total: -25.05 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: 0.80 Total: -30.41 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.93 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.97 -7.91 -34.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240887492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.399 kcal (2) G-P(sol) polarization free energy of solvation -26.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds