Wall clock time and date at job start Tue Mar 31 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47298 * 2 1 4 4 C 1.53006 * 109.47048 * 119.99734 * 2 1 3 5 5 N 1.46499 * 109.46955 * 175.00213 * 4 2 1 6 6 C 1.34704 * 125.81385 * 125.00334 * 5 4 2 7 7 C 1.37881 * 107.39016 * 179.70108 * 6 5 4 8 8 C 1.47914 * 126.37301 * 180.28635 * 7 6 5 9 9 C 1.39064 * 120.31571 * 309.71801 * 8 7 6 10 10 C 1.38348 * 119.95680 * 179.74097 * 9 8 7 11 11 F 1.35102 * 119.69513 * 180.23120 * 10 9 8 12 12 C 1.39239 * 120.61261 * 0.52138 * 10 9 8 13 13 C 1.36333 * 120.65440 * 359.75621 * 12 10 9 14 14 C 1.40784 * 120.01309 * 359.97438 * 13 12 10 15 15 C 1.40831 * 120.30137 * 179.97438 * 14 13 12 16 16 H 1.08005 * 120.00483 * 153.36326 * 15 14 13 17 17 C 1.39980 * 120.00358 * 333.36910 * 15 14 13 18 18 N 1.30852 * 119.99581 * 343.99967 * 17 15 14 19 19 Si 1.86799 * 120.00647 * 163.99770 * 17 15 14 20 20 H 1.48498 * 109.46904 * 89.99804 * 19 17 15 21 21 H 1.48490 * 109.47241 * 210.00064 * 19 17 15 22 22 H 1.48500 * 109.46933 * 330.00592 * 19 17 15 23 23 C 1.41119 * 107.25902 * 0.25941 * 7 6 5 24 24 N 1.30555 * 108.11811 * 0.02562 * 23 7 6 25 25 H 1.09006 * 109.47306 * 299.99808 * 1 2 3 26 26 H 1.08998 * 109.47534 * 60.00173 * 1 2 3 27 27 H 1.09004 * 109.47133 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47424 * 239.99785 * 2 1 3 29 29 H 1.08998 * 109.46687 * 300.00345 * 3 2 1 30 30 H 1.09006 * 109.46786 * 59.99874 * 3 2 1 31 31 H 1.08995 * 109.46855 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47193 * 55.00093 * 4 2 1 33 33 H 1.09000 * 109.47359 * 295.00197 * 4 2 1 34 34 H 1.08004 * 126.30482 * 359.96209 * 6 5 4 35 35 H 1.07995 * 120.02415 * 0.02562 * 9 8 7 36 36 H 1.08004 * 119.67324 * 179.73431 * 12 10 9 37 37 H 1.08002 * 119.99300 * 179.97438 * 13 12 10 38 38 H 0.96995 * 119.99960 * 180.02562 * 18 17 15 39 39 H 1.08000 * 125.94418 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.3598 -0.3953 2.1338 7 6 5.6336 -0.6897 1.6957 8 6 6.8956 -0.4033 2.4119 9 6 7.1446 0.8694 2.9141 10 6 8.3252 1.1276 3.5875 11 9 8.5595 2.3647 4.0772 12 6 9.2768 0.1259 3.7600 13 6 9.0610 -1.1291 3.2730 14 6 7.8666 -1.4231 2.5884 15 6 7.6377 -2.7173 2.0824 16 1 6.6271 -3.0765 1.9551 17 6 8.7199 -3.5383 1.7444 18 7 9.9124 -3.0205 1.5959 19 14 8.4619 -5.3728 1.5055 20 1 8.1314 -5.6451 0.0836 21 1 9.7037 -6.0994 1.8729 22 1 7.3452 -5.8323 2.3698 23 6 5.5092 -1.3157 0.4370 24 7 4.2391 -1.3888 0.1437 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6053 -1.7198 1.2953 33 1 1.7516 -0.1583 2.1371 34 1 4.0992 0.0878 3.0639 35 1 6.4148 1.6545 2.7825 36 1 10.1951 0.3454 4.2844 37 1 9.8067 -1.8979 3.4126 38 1 10.6623 -3.5893 1.3613 39 1 6.3231 -1.6723 -0.1768 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240887492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:00 Heat of formation + Delta-G solvation = 17.168312 kcal Electronic energy + Delta-G solvation = -22188.190572 eV Core-core repulsion = 18817.348920 eV Total energy + Delta-G solvation = -3370.841651 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.26167 -41.88486 -39.15395 -37.26403 -35.45033 -33.22730 -32.29693 -31.24662 -29.59715 -28.06447 -27.18054 -26.60947 -23.45807 -22.91655 -22.04461 -21.09535 -20.39024 -19.22315 -18.28031 -17.27526 -17.06744 -16.45895 -16.29332 -16.01544 -15.79974 -15.44888 -15.30550 -14.62238 -14.42710 -14.06878 -13.94578 -13.71553 -13.65945 -13.60942 -13.10876 -13.00238 -12.85181 -12.74355 -12.53410 -12.17432 -12.13788 -11.93685 -11.84306 -11.69742 -11.47840 -11.18503 -10.98927 -10.14362 -9.78679 -9.20928 -8.80258 -8.54845 -6.24091 0.71241 0.90628 1.18756 1.41108 1.47544 1.53870 1.78828 2.12619 2.21578 2.69545 3.56950 3.67270 3.90079 3.98347 4.04067 4.13725 4.23134 4.36098 4.40654 4.43130 4.59404 4.68340 4.79561 4.86938 4.94421 4.97903 5.03022 5.03935 5.20458 5.22009 5.27616 5.34551 5.36236 5.42575 5.62131 5.70875 5.94612 6.02777 6.11765 6.31485 6.35986 6.65726 6.91948 6.95323 7.01641 8.31878 Molecular weight = 288.13amu Principal moments of inertia in cm(-1) A = 0.012819 B = 0.005571 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.733832 B = 5024.919275 C = 6931.366147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 C -0.142 4.142 4 C 0.131 3.869 5 N -0.363 5.363 6 C 0.049 3.951 7 C -0.170 4.170 8 C -0.112 4.112 9 C -0.106 4.106 10 C -0.058 4.058 11 F -0.172 7.172 12 C -0.134 4.134 13 C -0.157 4.157 14 C 0.093 3.907 15 C -0.457 4.457 16 H 0.077 0.923 17 C 0.042 3.958 18 N -0.816 5.816 19 Si 0.970 3.030 20 H -0.265 1.265 21 H -0.266 1.266 22 H -0.263 1.263 23 C 0.060 3.940 24 N -0.326 5.326 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.025 0.975 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.196 0.804 35 H 0.121 0.879 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.290 0.710 39 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.334 2.386 -0.662 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 C -0.200 4.200 4 C 0.011 3.989 5 N -0.145 5.145 6 C -0.098 4.098 7 C -0.182 4.182 8 C -0.115 4.115 9 C -0.125 4.125 10 C -0.078 4.078 11 F -0.151 7.151 12 C -0.153 4.153 13 C -0.176 4.176 14 C 0.090 3.910 15 C -0.486 4.486 16 H 0.095 0.905 17 C -0.175 4.175 18 N -0.442 5.442 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.190 1.190 22 H -0.187 1.187 23 C -0.125 4.125 24 N -0.148 5.148 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.106 0.894 33 H 0.139 0.861 34 H 0.213 0.787 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.101 0.899 39 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -15.113 1.993 -1.576 15.325 hybrid contribution 1.376 -0.272 0.462 1.476 sum -13.737 1.721 -1.113 13.889 Atomic orbital electron populations 1.21737 0.91839 1.02764 1.03191 1.21355 0.97609 0.96187 0.97153 1.21779 0.99658 0.95824 1.02713 1.22156 0.72885 1.02782 1.01068 1.48518 1.07076 1.45193 1.13717 1.23135 0.88943 1.01518 0.96193 1.18983 0.92164 1.10204 0.96816 1.17963 0.95880 0.91953 1.05694 1.20711 0.95615 0.96798 0.99361 1.17327 0.98885 0.80416 1.11131 1.91280 1.95276 1.41120 1.87447 1.20609 0.98352 0.93667 1.02649 1.20848 0.99907 0.95588 1.01291 1.17912 0.90879 0.92853 0.89328 1.19572 0.94098 0.97945 1.36963 0.90503 1.26636 0.94019 1.04636 0.92167 1.69848 1.01735 1.39269 1.33320 0.85366 0.79006 0.76987 0.79463 1.18986 1.19021 1.18723 1.23858 0.93703 0.98548 0.96385 1.76924 1.04295 1.21925 1.11694 0.90893 0.91687 0.91808 0.92149 0.91924 0.91133 0.95527 0.89351 0.86117 0.78709 0.86127 0.86833 0.86824 0.89908 0.81514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.19 71.98 0.66 -1.07 16 2 C -0.10 -1.98 3.00 -10.79 -0.03 -2.01 16 3 C -0.14 -2.86 9.08 71.98 0.65 -2.20 16 4 C 0.13 2.67 5.89 86.38 0.51 3.17 16 5 N -0.36 -11.13 3.12 -346.07 -1.08 -12.21 16 6 C 0.05 1.62 11.40 84.17 0.96 2.58 16 7 C -0.17 -7.04 4.97 -20.09 -0.10 -7.14 16 8 C -0.11 -5.22 5.81 -19.61 -0.11 -5.34 16 9 C -0.11 -4.69 9.68 22.49 0.22 -4.47 16 10 C -0.06 -2.68 7.31 22.54 0.16 -2.51 16 11 F -0.17 -7.59 17.26 44.97 0.78 -6.81 16 12 C -0.13 -6.32 9.94 22.07 0.22 -6.10 16 13 C -0.16 -7.96 8.61 22.45 0.19 -7.77 16 14 C 0.09 4.76 5.58 -21.11 -0.12 4.64 16 15 C -0.46 -23.04 7.73 23.33 0.18 -22.86 16 16 H 0.08 3.88 6.70 -2.91 -0.02 3.86 16 17 C 0.04 1.99 5.16 85.26 0.44 2.43 16 18 N -0.82 -40.47 10.99 21.84 0.24 -40.23 16 19 Si 0.97 37.18 29.59 68.60 2.03 39.21 16 20 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 21 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 23 C 0.06 2.49 10.37 85.59 0.89 3.38 16 24 N -0.33 -12.28 12.25 -56.34 -0.69 -12.97 16 25 H 0.07 0.70 8.14 -2.38 -0.02 0.69 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.06 1.47 8.04 -2.39 -0.02 1.45 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.15 8.14 -2.38 -0.02 1.14 16 31 H 0.03 0.70 7.75 -2.39 -0.02 0.68 16 32 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.12 1.73 8.06 -2.39 -0.02 1.71 16 34 H 0.20 5.09 8.06 -2.91 -0.02 5.07 16 35 H 0.12 4.73 8.06 -2.91 -0.02 4.70 16 36 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 37 H 0.11 5.93 6.24 -2.91 -0.02 5.91 16 38 H 0.29 13.06 8.30 -92.71 -0.77 12.29 16 39 H 0.17 7.22 7.94 -2.91 -0.02 7.20 16 Total: -1.00 -59.18 334.28 7.05 -52.13 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 1.05 Total: 26.14 kcal Atomic # 6 Polarization: -49.99 SS G_CDS: 4.72 Total: -45.27 kcal Atomic # 7 Polarization: -63.88 SS G_CDS: -1.53 Total: -65.41 kcal Atomic # 9 Polarization: -7.59 SS G_CDS: 0.78 Total: -6.81 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Total: -59.18 7.05 -52.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240887492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.303 kcal (2) G-P(sol) polarization free energy of solvation -59.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds