Wall clock time and date at job start Tue Mar 31 2020 07:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86800 * 119.99846 * 2 1 4 4 H 1.48500 * 109.47152 * 269.99699 * 3 2 1 5 5 H 1.48497 * 109.47344 * 30.00036 * 3 2 1 6 6 H 1.48505 * 109.47037 * 150.00034 * 3 2 1 7 7 C 1.38947 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99883 * 359.97438 * 7 2 1 9 9 N 1.37098 * 120.00100 * 179.97438 * 7 2 1 10 10 C 1.34772 * 119.99817 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00248 * 0.02562 * 10 9 7 12 12 C 1.50699 * 119.99678 * 180.02562 * 10 9 7 13 13 N 1.46908 * 109.47259 * 180.02562 * 12 10 9 14 14 C 1.46898 * 111.00112 * 185.57712 * 13 12 10 15 15 H 1.09000 * 109.47059 * 38.10839 * 14 13 12 16 16 C 1.50700 * 109.46913 * 278.11095 * 14 13 12 17 17 C 1.38233 * 120.00388 * 319.73062 * 16 14 13 18 18 C 1.38231 * 120.00338 * 179.81145 * 17 16 14 19 19 C 1.38237 * 119.99941 * 0.39306 * 18 17 16 20 20 C 1.38228 * 119.99698 * 359.85739 * 19 18 17 21 21 C 1.38232 * 120.00573 * 359.95474 * 20 19 18 22 22 C 1.52998 * 109.47043 * 158.11276 * 14 13 12 23 23 C 1.53783 * 113.61291 * 198.65619 * 22 14 13 24 24 C 1.54048 * 86.98551 * 140.02234 * 23 22 14 25 25 C 1.53777 * 113.61727 * 296.26434 * 22 14 13 26 26 H 0.96993 * 119.99774 * 359.97438 * 1 2 3 27 27 H 0.96995 * 119.99615 * 0.02562 * 9 7 2 28 28 H 1.08999 * 109.47563 * 60.00128 * 12 10 9 29 29 H 1.09002 * 109.47337 * 299.99852 * 12 10 9 30 30 H 1.00895 * 110.99935 * 61.61872 * 13 12 10 31 31 H 1.08008 * 119.99851 * 359.97438 * 17 16 14 32 32 H 1.08002 * 119.99876 * 180.23051 * 18 17 16 33 33 H 1.07998 * 119.99956 * 179.83610 * 19 18 17 34 34 H 1.08010 * 119.99786 * 179.97438 * 20 19 18 35 35 H 1.07997 * 120.00275 * 179.97438 * 21 20 19 36 36 H 1.09005 * 112.85139 * 67.46400 * 22 14 13 37 37 H 1.09004 * 113.61449 * 254.61166 * 23 22 14 38 38 H 1.08994 * 113.61721 * 25.51769 * 23 22 14 39 39 H 1.09002 * 113.61882 * 220.02391 * 24 23 22 40 40 H 1.08997 * 113.69380 * 89.12191 * 24 23 22 41 41 H 1.09007 * 113.61431 * 334.48484 * 25 22 14 42 42 H 1.08995 * 113.61184 * 105.38309 * 25 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0020 12 6 5.5607 -2.3705 0.0011 13 7 6.0505 -3.7555 0.0017 14 6 7.5128 -3.7967 0.1350 15 1 7.8367 -3.0193 0.8270 16 6 8.1467 -3.5656 -1.2125 17 6 7.5997 -4.1447 -2.3423 18 6 8.1789 -3.9295 -3.5788 19 6 9.3100 -3.1418 -3.6846 20 6 9.8600 -2.5669 -2.5542 21 6 9.2785 -2.7789 -1.3182 22 6 7.9377 -5.1655 0.6704 23 6 9.3532 -5.1796 1.2714 24 6 8.7879 -6.0948 2.3741 25 6 7.4160 -5.4622 2.0863 26 1 -0.4849 0.8400 0.0004 27 1 3.8648 -0.3633 -0.0004 28 1 5.9241 -1.8559 0.8906 29 1 5.9241 -1.8574 -0.8894 30 1 5.7489 -4.2460 -0.8268 31 1 6.7182 -4.7632 -2.2591 32 1 7.7493 -4.3790 -4.4619 33 1 9.7640 -2.9759 -4.6503 34 1 10.7439 -1.9518 -2.6368 35 1 9.7085 -2.3301 -0.4350 36 1 7.7568 -5.9726 -0.0396 37 1 10.0928 -5.6658 0.6352 38 1 9.6819 -4.2070 1.6372 39 1 9.1727 -5.8691 3.3687 40 1 8.8388 -7.1561 2.1313 41 1 7.2161 -4.5666 2.6745 42 1 6.5928 -6.1763 2.1075 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066534603.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:16 Heat of formation + Delta-G solvation = 12.400460 kcal Electronic energy + Delta-G solvation = -22533.597895 eV Core-core repulsion = 19286.009799 eV Total energy + Delta-G solvation = -3247.588096 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.13703 -38.37110 -38.24363 -35.32639 -33.86733 -31.66529 -31.26970 -30.91219 -28.13135 -26.00241 -25.42408 -23.72571 -23.31410 -22.47672 -20.62301 -19.55716 -19.18897 -18.27342 -17.26177 -16.12542 -15.68838 -15.48274 -15.23249 -14.93222 -14.71316 -14.44621 -13.86123 -13.71675 -13.46712 -13.26713 -12.92949 -12.79780 -12.43153 -12.38756 -12.10363 -11.86268 -11.83716 -11.61384 -11.23272 -11.12000 -10.98192 -10.61860 -10.56599 -10.29036 -10.19375 -9.94692 -9.53796 -9.01924 -8.77649 -8.57121 -8.15616 -8.08681 -6.28291 -3.79372 1.25341 1.30421 3.04799 3.08778 3.16705 3.68009 3.79329 4.04342 4.13025 4.49665 4.70950 4.74672 4.80576 4.82103 4.89278 4.99605 5.00540 5.17196 5.24513 5.28752 5.38781 5.50545 5.52662 5.67451 5.72635 5.77801 5.82886 5.84054 5.88588 5.89451 5.93903 5.99038 6.18931 6.28643 6.37049 6.40939 6.45349 6.55046 6.90281 7.15789 7.59078 7.62147 8.17946 8.63562 8.98443 9.46041 9.87299 10.85022 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.015235 B = 0.004262 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.491989 B = 6568.718252 C = 7609.157876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.303 4.303 8 H 0.119 0.881 9 N -0.593 5.593 10 C 0.453 3.547 11 O -0.563 6.563 12 C 0.048 3.952 13 N -0.653 5.653 14 C 0.135 3.865 15 H 0.085 0.915 16 C -0.105 4.105 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.127 4.127 20 C -0.120 4.120 21 C -0.113 4.113 22 C -0.090 4.090 23 C -0.133 4.133 24 C -0.148 4.148 25 C -0.117 4.117 26 H 0.273 0.727 27 H 0.370 0.630 28 H 0.086 0.914 29 H 0.044 0.956 30 H 0.349 0.651 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.964 -5.503 -2.087 23.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.232 5.232 10 C 0.238 3.762 11 O -0.444 6.444 12 C -0.085 4.085 13 N -0.284 5.284 14 C 0.024 3.976 15 H 0.103 0.897 16 C -0.107 4.107 17 C -0.135 4.135 18 C -0.133 4.133 19 C -0.145 4.145 20 C -0.138 4.138 21 C -0.131 4.131 22 C -0.109 4.109 23 C -0.171 4.171 24 C -0.185 4.185 25 C -0.154 4.154 26 H 0.083 0.917 27 H 0.202 0.798 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.171 0.829 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.178 -6.195 -1.403 23.070 hybrid contribution 0.855 1.840 -1.029 2.275 sum 23.033 -4.355 -2.433 23.567 Atomic orbital electron populations 1.69623 1.05619 1.27422 1.49640 1.25024 0.95474 0.97910 0.97737 0.86686 0.79814 0.84135 0.78849 1.19689 1.20182 1.19501 1.19431 0.79276 0.96602 1.47907 0.86301 1.42212 1.07505 1.06172 1.67347 1.19709 0.88167 0.84520 0.83772 1.90561 1.69464 1.30921 1.53476 1.21730 0.95032 0.90544 1.01216 1.60233 1.07440 1.13742 1.47003 1.20709 0.87346 0.97768 0.91775 0.89699 1.20841 0.96153 0.97010 0.96731 1.21021 1.00099 0.99943 0.92396 1.21135 0.96058 0.98651 0.97469 1.21125 0.96679 0.98243 0.98454 1.21125 0.99968 0.99932 0.92824 1.21023 0.95784 0.98806 0.97518 1.22454 0.95552 0.95992 0.96866 1.22954 0.96246 0.99998 0.97885 1.22915 0.97897 0.99072 0.98615 1.22712 0.96114 1.00903 0.95679 0.91667 0.79758 0.89611 0.93782 0.82947 0.85907 0.86117 0.86370 0.86340 0.86291 0.89496 0.91912 0.90369 0.91813 0.90574 0.90049 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.06 13.96 55.50 0.77 -25.28 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.65 27.74 -169.99 -4.71 14.94 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 7 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 8 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16 9 N -0.59 -14.37 5.09 -10.96 -0.06 -14.43 16 10 C 0.45 10.44 7.83 -10.99 -0.09 10.35 16 11 O -0.56 -15.26 15.90 5.55 0.09 -15.18 16 12 C 0.05 0.81 5.98 -4.97 -0.03 0.78 16 13 N -0.65 -10.10 5.58 -109.22 -0.61 -10.71 16 14 C 0.13 1.62 1.93 -68.87 -0.13 1.49 16 15 H 0.08 0.99 7.51 -51.93 -0.39 0.60 16 16 C -0.11 -1.22 4.58 -104.62 -0.48 -1.70 16 17 C -0.12 -1.38 9.15 -39.59 -0.36 -1.75 16 18 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 19 C -0.13 -1.27 10.05 -39.59 -0.40 -1.67 16 20 C -0.12 -1.19 10.05 -39.59 -0.40 -1.58 16 21 C -0.11 -1.18 9.67 -39.58 -0.38 -1.57 16 22 C -0.09 -0.99 3.29 -89.81 -0.30 -1.28 16 23 C -0.13 -1.23 7.59 -25.78 -0.20 -1.42 16 24 C -0.15 -1.37 8.09 -25.78 -0.21 -1.58 16 25 C -0.12 -1.33 7.48 -25.92 -0.19 -1.53 16 26 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.37 7.92 5.76 -40.82 -0.24 7.69 16 28 H 0.09 1.31 7.93 -51.93 -0.41 0.90 16 29 H 0.04 0.70 7.99 -51.93 -0.42 0.28 16 30 H 0.35 5.60 6.35 -39.29 -0.25 5.35 16 31 H 0.12 1.46 6.52 -52.48 -0.34 1.12 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 35 H 0.12 1.06 8.04 -52.49 -0.42 0.64 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.68 8.02 -51.93 -0.42 0.26 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.98 8.10 -51.92 -0.42 0.56 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 347.19 15.07 5.23 5.23 Total: -1.00 -32.29 347.19 -9.33 -41.62 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -6.24 Total: 14.71 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -3.81 Total: -10.91 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.11 Total: -50.42 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.09 Total: -15.18 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.94 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.29 -9.33 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066534603.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.025 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds