Wall clock time and date at job start Tue Mar 31 2020 06:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99666 * 2 1 4 4 H 1.48503 * 109.47370 * 85.00839 * 3 2 1 5 5 H 1.48503 * 109.47216 * 325.00750 * 3 2 1 6 6 H 1.48500 * 109.47088 * 205.00892 * 3 2 1 7 7 C 1.37866 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99973 * 185.17544 * 7 2 1 9 9 C 1.50699 * 120.00374 * 5.17911 * 7 2 1 10 10 N 1.46905 * 109.47362 * 174.47423 * 9 7 2 11 11 C 1.45748 * 111.00082 * 63.56452 * 10 9 7 12 12 C 1.51685 * 113.93885 * 167.27806 * 11 10 9 13 13 C 1.53106 * 110.75856 * 66.77316 * 12 11 10 14 14 N 1.47252 * 108.40286 * 274.40877 * 13 12 11 15 15 C 1.33615 * 119.84275 * 69.98197 * 14 13 12 16 16 O 1.21280 * 119.87746 * 180.53104 * 15 14 13 17 17 C 1.46879 * 110.99638 * 297.74225 * 10 9 7 18 18 H 1.08995 * 109.60847 * 330.55507 * 17 10 9 19 19 C 1.53010 * 109.59767 * 91.02964 * 17 10 9 20 20 C 1.50703 * 109.47057 * 160.98195 * 19 17 10 21 21 C 1.38230 * 120.00294 * 243.07690 * 20 19 17 22 22 C 1.38238 * 119.99999 * 179.76797 * 21 20 19 23 23 C 1.38230 * 120.00056 * 0.50120 * 22 21 20 24 24 C 1.38233 * 119.99981 * 359.75074 * 23 22 21 25 25 C 1.38238 * 119.99686 * 63.34555 * 20 19 17 26 26 H 0.97005 * 119.99889 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47013 * 294.47006 * 9 7 2 28 28 H 1.09004 * 109.47351 * 54.47254 * 9 7 2 29 29 H 1.09003 * 108.59168 * 288.42618 * 11 10 9 30 30 H 1.08999 * 108.59428 * 46.27249 * 11 10 9 31 31 H 1.08995 * 109.22159 * 187.10203 * 12 11 10 32 32 H 1.09000 * 109.22124 * 306.48923 * 12 11 10 33 33 H 1.08998 * 109.68360 * 34.13497 * 13 12 11 34 34 H 1.08999 * 109.68346 * 154.64679 * 13 12 11 35 35 H 0.96997 * 120.07920 * 250.01311 * 14 13 12 36 36 H 1.08994 * 109.47212 * 280.98596 * 19 17 10 37 37 H 1.08999 * 109.46915 * 40.98640 * 19 17 10 38 38 H 1.08001 * 119.99683 * 359.97438 * 21 20 19 39 39 H 1.07998 * 119.99728 * 180.22485 * 22 21 20 40 40 H 1.07997 * 120.00369 * 179.72228 * 23 22 21 41 41 H 1.07998 * 120.00212 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.00208 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3911 2.1074 1.3948 5 1 1.5032 2.6199 -0.8029 6 1 3.5954 1.4121 -0.5919 7 6 2.0045 -1.1940 0.0005 8 1 3.0812 -1.1959 0.0849 9 6 1.2557 -2.4965 -0.1167 10 7 2.2142 -3.6044 -0.2251 11 6 3.0207 -3.7176 0.9837 12 6 3.8127 -5.0078 1.0766 13 6 4.8938 -5.0601 -0.0063 14 7 4.2914 -5.5944 -1.2391 15 6 3.4085 -4.8586 -1.9207 16 8 2.9047 -5.3019 -2.9309 17 6 3.0347 -3.4739 -1.4363 18 1 2.4661 -2.9572 -2.2094 19 6 4.3042 -2.6830 -1.1134 20 6 5.3394 -2.9380 -2.1785 21 6 6.5327 -3.5534 -1.8494 22 6 7.4802 -3.7916 -2.8273 23 6 7.2388 -3.4051 -4.1324 24 6 6.0477 -2.7851 -4.4605 25 6 5.0980 -2.5516 -3.4836 26 1 -0.4850 -0.8401 0.0004 27 1 0.6341 -2.6391 0.7674 28 1 0.6243 -2.4740 -1.0050 29 1 3.7168 -2.8794 1.0167 30 1 2.3608 -3.6543 1.8489 31 1 4.2840 -5.0697 2.0574 32 1 3.1370 -5.8536 0.9493 33 1 5.2778 -4.0568 -0.1904 34 1 5.7065 -5.7105 0.3174 35 1 4.5346 -6.4784 -1.5555 36 1 4.0709 -1.6189 -1.0808 37 1 4.6931 -2.9996 -0.1456 38 1 6.7232 -3.8510 -0.8289 39 1 8.4110 -4.2756 -2.5709 40 1 7.9809 -3.5872 -4.8956 41 1 5.8593 -2.4828 -5.4801 42 1 4.1677 -2.0665 -3.7399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293121663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:59 Heat of formation + Delta-G solvation = 33.718765 kcal Electronic energy + Delta-G solvation = -24482.325254 eV Core-core repulsion = 21235.661590 eV Total energy + Delta-G solvation = -3246.663665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.97083 -38.57638 -37.24321 -35.11780 -33.00913 -32.58745 -31.03855 -30.67350 -28.31395 -26.45174 -25.18308 -24.09693 -22.72065 -22.20357 -21.13710 -20.21683 -18.91989 -17.38067 -16.89886 -16.51186 -16.23282 -15.35075 -14.85735 -14.70318 -14.51568 -13.94478 -13.78836 -13.68789 -13.37412 -13.22410 -12.81326 -12.69299 -12.51702 -12.17217 -11.98996 -11.63344 -11.32055 -11.21200 -11.09129 -10.92877 -10.67500 -10.51086 -10.27233 -10.13750 -9.84581 -9.41448 -9.04659 -8.74847 -8.62935 -8.47807 -8.38640 -7.31778 -6.44657 -4.21939 1.51781 1.56369 3.14943 3.34787 3.38035 3.51693 3.69674 3.95055 4.42956 4.70345 4.84327 4.90363 5.03355 5.09909 5.14348 5.20303 5.27585 5.30732 5.40203 5.54566 5.63996 5.70102 5.79047 5.84689 5.90221 5.99674 6.10627 6.17863 6.26698 6.38652 6.48454 6.59229 6.66564 6.67665 6.84957 6.92216 7.14141 7.16856 7.20961 7.64013 7.66823 7.97914 8.01811 8.37230 8.70169 8.72601 9.52033 10.90467 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.014952 B = 0.007031 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.225023 B = 3981.258566 C = 4891.252260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.026 3.974 3 Si 1.062 2.938 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.641 4.641 8 H 0.065 0.935 9 C 0.179 3.821 10 N -0.529 5.529 11 C 0.054 3.946 12 C -0.141 4.141 13 C 0.063 3.937 14 N -0.718 5.718 15 C 0.541 3.459 16 O -0.559 6.559 17 C 0.099 3.901 18 H 0.106 0.894 19 C -0.145 4.145 20 C -0.075 4.075 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.131 4.131 24 C -0.116 4.116 25 C -0.108 4.108 26 H 0.271 0.729 27 H 0.023 0.977 28 H 0.027 0.973 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.391 0.609 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.826 -7.717 -0.809 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.181 4.181 3 Si 0.891 3.109 4 H -0.215 1.215 5 H -0.209 1.209 6 H -0.214 1.214 7 C -0.679 4.679 8 H 0.083 0.917 9 C 0.054 3.946 10 N -0.253 5.253 11 C -0.074 4.074 12 C -0.180 4.180 13 C -0.060 4.060 14 N -0.370 5.370 15 C 0.327 3.673 16 O -0.436 6.436 17 C -0.013 4.013 18 H 0.124 0.876 19 C -0.182 4.182 20 C -0.075 4.075 21 C -0.143 4.143 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.134 4.134 25 C -0.126 4.126 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.226 0.774 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.005 -6.539 -1.309 15.511 hybrid contribution 0.725 -1.291 0.077 1.483 sum 14.729 -7.830 -1.232 16.727 Atomic orbital electron populations 1.70746 1.06989 1.30882 1.45346 1.25710 0.96407 1.02531 0.93411 0.83634 0.74828 0.75549 0.76908 1.21455 1.20922 1.21366 1.22794 0.95460 0.92886 1.56802 0.91719 1.19941 0.90898 0.86726 0.97048 1.61519 1.17077 1.46572 1.00102 1.21500 0.96769 0.95516 0.93664 1.21954 0.97875 0.99971 0.98235 1.22955 0.95770 1.02746 0.84548 1.45801 1.45022 1.19599 1.26600 1.20731 0.76805 0.87486 0.82241 1.90658 1.53836 1.73035 1.26110 1.21756 0.93486 0.90189 0.95881 0.87630 1.22281 0.93806 1.04547 0.97605 1.20076 0.95177 0.97129 0.95145 1.21180 0.93807 0.99992 0.99339 1.21027 0.98978 1.00591 0.93361 1.21046 0.97440 1.00043 0.96427 1.21115 0.94027 0.99107 0.99168 1.21124 0.99366 0.99466 0.92642 0.91804 0.95861 0.95508 0.93399 0.91221 0.90838 0.91037 0.86760 0.90636 0.77381 0.86844 0.87691 0.85951 0.86582 0.86658 0.86371 0.85852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.19 13.65 55.43 0.76 -25.43 16 2 C 0.03 0.69 5.45 -17.82 -0.10 0.59 16 3 Si 1.06 23.86 29.91 -169.99 -5.08 18.77 16 4 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.64 -16.10 7.47 -34.44 -0.26 -16.35 16 8 H 0.06 1.54 3.93 -52.49 -0.21 1.34 16 9 C 0.18 4.32 4.24 -4.97 -0.02 4.30 16 10 N -0.53 -10.78 4.56 -230.87 -1.05 -11.83 16 11 C 0.05 0.92 4.40 -5.11 -0.02 0.90 16 12 C -0.14 -1.86 5.85 -27.34 -0.16 -2.02 16 13 C 0.06 0.75 4.96 -3.58 -0.02 0.73 16 14 N -0.72 -10.46 4.87 -59.75 -0.29 -10.75 16 15 C 0.54 10.22 5.72 -11.16 -0.06 10.16 16 16 O -0.56 -12.64 17.92 5.56 0.10 -12.54 16 17 C 0.10 1.93 2.01 -68.53 -0.14 1.79 16 18 H 0.11 2.35 7.68 -51.93 -0.40 1.95 16 19 C -0.15 -2.47 3.19 -27.88 -0.09 -2.56 16 20 C -0.07 -1.16 3.78 -104.62 -0.40 -1.55 16 21 C -0.13 -1.63 8.20 -39.58 -0.32 -1.96 16 22 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 23 C -0.13 -1.63 10.05 -39.59 -0.40 -2.03 16 24 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 25 C -0.11 -1.72 9.33 -39.58 -0.37 -2.09 16 26 H 0.27 7.86 7.25 -40.82 -0.30 7.57 16 27 H 0.02 0.59 7.90 -51.93 -0.41 0.18 16 28 H 0.03 0.71 7.84 -51.93 -0.41 0.30 16 29 H 0.05 0.84 4.63 -51.93 -0.24 0.60 16 30 H 0.07 1.25 7.88 -51.93 -0.41 0.84 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.02 8.05 -51.93 -0.42 0.60 16 33 H 0.12 1.42 1.30 -51.93 -0.07 1.36 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.39 5.13 8.92 -40.82 -0.36 4.76 16 36 H 0.11 2.21 5.64 -51.93 -0.29 1.92 16 37 H 0.11 1.61 2.56 -51.93 -0.13 1.48 16 38 H 0.12 1.33 5.82 -52.49 -0.31 1.02 16 39 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 314.89 15.07 4.75 4.75 Total: -1.00 -30.91 314.89 -9.26 -40.16 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -5.28 Total: 10.82 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -3.15 Total: -13.95 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -0.59 Total: -48.01 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.10 Total: -12.54 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.08 Total: 18.77 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.91 -9.26 -40.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293121663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.879 kcal (2) G-P(sol) polarization free energy of solvation -30.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds