Wall clock time and date at job start Tue Mar 31 2020 06:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47319 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.46902 * 304.99868 * 11 10 9 13 13 N 1.46897 * 109.47378 * 64.99832 * 11 10 9 14 14 C 1.50700 * 109.47090 * 184.99901 * 11 10 9 15 15 O 1.21282 * 120.00167 * 259.99698 * 14 11 10 16 16 N 1.34779 * 119.99988 * 80.00415 * 14 11 10 17 17 C 1.46499 * 120.00010 * 180.02562 * 16 14 11 18 18 C 1.53002 * 109.47137 * 179.97438 * 17 16 14 19 19 H 1.08994 * 112.50710 * 45.33017 * 18 17 16 20 20 C 1.52883 * 113.16652 * 175.16427 * 18 17 16 21 21 C 1.51587 * 84.67810 * 115.22551 * 20 18 17 22 22 C 1.38949 * 145.53600 * 179.97438 * 21 20 18 23 23 C 1.37977 * 120.32427 * 180.02562 * 22 21 20 24 24 C 1.38235 * 120.17864 * 0.02562 * 23 22 21 25 25 C 1.38175 * 119.75078 * 359.97438 * 24 23 22 26 26 C 1.38246 * 120.12214 * 0.02562 * 25 24 23 27 27 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 29 29 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 30 30 H 1.09000 * 109.46887 * 300.00372 * 10 9 7 31 31 H 1.08998 * 109.46846 * 59.99549 * 10 9 7 32 32 H 1.00896 * 111.00078 * 60.00144 * 13 11 10 33 33 H 1.00899 * 111.00098 * 183.95517 * 13 11 10 34 34 H 0.97003 * 119.99921 * 359.97438 * 16 14 11 35 35 H 1.09001 * 109.47152 * 299.99316 * 17 16 14 36 36 H 1.08998 * 109.47228 * 59.99348 * 17 16 14 37 37 H 1.09003 * 113.98654 * 229.17041 * 20 18 17 38 38 H 1.09002 * 113.98953 * 1.27225 * 20 18 17 39 39 H 1.08004 * 119.83868 * 0.04504 * 22 21 20 40 40 H 1.08008 * 119.91134 * 180.02562 * 23 22 21 41 41 H 1.08007 * 120.12802 * 180.02562 * 24 23 22 42 42 H 1.07998 * 119.94034 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9870 0.0012 12 1 0.7874 -5.0069 0.8423 13 7 0.7301 -5.1187 -1.2548 14 6 2.4550 -6.1297 0.1263 15 8 2.7880 -6.7534 -0.8592 16 7 2.9566 -6.4586 1.3332 17 6 3.9044 -7.5690 1.4548 18 6 4.3158 -7.7304 2.9196 19 1 3.4650 -7.6852 3.5993 20 6 5.2154 -8.9427 3.1616 21 6 6.2615 -7.9133 3.5411 22 6 7.5671 -7.7119 3.9716 23 6 8.0434 -6.4333 4.1772 24 6 7.2235 -5.3425 3.9566 25 6 5.9242 -5.5368 3.5284 26 6 5.4459 -6.8173 3.3220 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6241 -2.5566 0.8903 29 1 0.6248 -2.5571 -0.8896 30 1 2.8727 -3.6046 -0.8877 31 1 2.8714 -3.6038 0.8922 32 1 1.3508 -5.1031 -2.0501 33 1 0.1658 -5.9551 -1.2529 34 1 2.6905 -5.9596 2.1214 35 1 3.4338 -8.4882 1.1059 36 1 4.7873 -7.3609 0.8505 37 1 4.8941 -9.5746 3.9895 38 1 5.4535 -9.5051 2.2587 39 1 8.2125 -8.5602 4.1458 40 1 9.0596 -6.2844 4.5115 41 1 7.5973 -4.3420 4.1174 42 1 5.2811 -4.6867 3.3547 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591599607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:21 Heat of formation + Delta-G solvation = 4.279184 kcal Electronic energy + Delta-G solvation = -21988.917008 eV Core-core repulsion = 18740.976747 eV Total energy + Delta-G solvation = -3247.940261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.99210 -39.65898 -36.46561 -35.33128 -34.20486 -33.04488 -30.98204 -29.98732 -28.82238 -26.94271 -25.58715 -23.79702 -23.00502 -21.59152 -20.94923 -20.36118 -19.63420 -17.31649 -16.99192 -16.60178 -16.38272 -15.76293 -15.36154 -15.14382 -14.79420 -14.56126 -13.87382 -13.69001 -13.65567 -13.35603 -13.27473 -12.79855 -12.60170 -12.40468 -12.20390 -12.10805 -11.81654 -11.53414 -11.15210 -10.82052 -10.73528 -10.58607 -10.25835 -10.08219 -9.95030 -9.67974 -9.13252 -9.03846 -8.84063 -8.51796 -8.35470 -8.21696 -6.28280 -3.96738 1.08166 1.17310 2.72323 3.17674 3.47070 3.49626 3.52807 3.68090 3.78987 4.12871 4.28588 4.50907 4.60062 4.81562 4.82886 4.87591 4.92412 5.06438 5.23184 5.30637 5.41027 5.42811 5.47636 5.49671 5.52624 5.63625 5.73437 5.81519 5.88514 6.17324 6.30236 6.31009 6.37213 6.50926 6.52998 6.76401 6.93912 7.28941 7.50566 7.54430 7.70534 7.74399 8.25820 8.30012 8.55284 8.97233 9.75237 11.12797 Molecular weight = 288.16amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.003746 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.328202 B = 7473.462442 C = 9145.597112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.067 2.933 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.604 4.604 8 H 0.045 0.955 9 C 0.019 3.981 10 C -0.087 4.087 11 C 0.077 3.923 12 H 0.097 0.903 13 N -0.809 5.809 14 C 0.484 3.516 15 O -0.554 6.554 16 N -0.729 5.729 17 C 0.132 3.868 18 C -0.053 4.053 19 H 0.101 0.899 20 C -0.066 4.066 21 C -0.132 4.132 22 C -0.101 4.101 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.083 4.083 26 C -0.127 4.127 27 H 0.270 0.730 28 H 0.003 0.997 29 H 0.026 0.974 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.348 0.652 33 H 0.335 0.665 34 H 0.403 0.597 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.609 -18.538 9.830 23.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.895 3.105 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.642 4.642 8 H 0.063 0.937 9 C -0.019 4.019 10 C -0.126 4.126 11 C -0.039 4.039 12 H 0.115 0.885 13 N -0.337 5.337 14 C 0.269 3.731 15 O -0.432 6.432 16 N -0.381 5.381 17 C 0.008 3.992 18 C -0.072 4.072 19 H 0.119 0.881 20 C -0.103 4.103 21 C -0.132 4.132 22 C -0.120 4.120 23 C -0.137 4.137 24 C -0.133 4.133 25 C -0.101 4.101 26 C -0.127 4.127 27 H 0.081 0.919 28 H 0.022 0.978 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.162 0.838 33 H 0.146 0.854 34 H 0.237 0.763 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.134 0.866 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.305 -16.635 9.306 22.162 hybrid contribution 0.900 -2.314 0.370 2.510 sum 12.205 -18.949 9.676 24.529 Atomic orbital electron populations 1.70760 1.06843 1.30754 1.46668 1.25780 0.96583 1.02537 0.93974 0.83583 0.74905 0.75587 0.76403 1.20805 1.21592 1.21541 1.22083 0.94115 0.92325 1.55727 0.93680 1.19131 0.94213 0.91643 0.96868 1.21505 0.98533 0.91655 1.00873 1.21842 0.93623 0.93401 0.95045 0.88522 1.59008 1.27002 1.44334 1.03326 1.22672 0.82220 0.85667 0.82518 1.90649 1.61104 1.54247 1.37152 1.46125 1.46546 1.35028 1.10423 1.21216 0.93225 0.90432 0.94305 1.21447 0.96458 0.92664 0.96618 0.88114 1.21764 0.91390 0.94991 1.02174 1.22329 0.94196 0.96999 0.99708 1.20519 0.94329 0.97047 1.00055 1.20984 0.99815 0.92240 1.00624 1.21086 0.93503 0.99166 0.99591 1.20329 0.95662 0.95542 0.98586 1.21599 0.97577 0.93644 0.99885 0.91908 0.97845 0.95555 0.92729 0.92702 0.83752 0.85372 0.76257 0.90984 0.91294 0.88469 0.88508 0.86617 0.85789 0.85371 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.35 13.65 55.43 0.76 -27.59 16 2 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.62 29.90 -169.99 -5.08 20.54 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.60 -17.36 9.11 -34.44 -0.31 -17.67 16 8 H 0.04 1.28 7.74 -52.49 -0.41 0.87 16 9 C 0.02 0.47 4.17 -27.88 -0.12 0.36 16 10 C -0.09 -1.78 4.78 -26.73 -0.13 -1.91 16 11 C 0.08 1.28 3.15 -68.87 -0.22 1.07 16 12 H 0.10 1.50 8.14 -51.92 -0.42 1.08 16 13 N -0.81 -13.63 8.44 -5.66 -0.05 -13.68 16 14 C 0.48 7.62 7.07 -10.98 -0.08 7.54 16 15 O -0.55 -10.29 16.25 5.56 0.09 -10.20 16 16 N -0.73 -9.01 5.56 -60.29 -0.33 -9.35 16 17 C 0.13 1.45 5.36 -4.04 -0.02 1.42 16 18 C -0.05 -0.47 3.74 -95.44 -0.36 -0.83 16 19 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 20 C -0.07 -0.49 8.02 -27.51 -0.22 -0.71 16 21 C -0.13 -1.30 7.32 -107.51 -0.79 -2.09 16 22 C -0.10 -0.95 10.05 -39.41 -0.40 -1.35 16 23 C -0.12 -1.10 10.03 -39.68 -0.40 -1.50 16 24 C -0.12 -1.17 10.06 -39.61 -0.40 -1.57 16 25 C -0.08 -0.94 10.04 -39.60 -0.40 -1.33 16 26 C -0.13 -1.36 7.00 -104.55 -0.73 -2.10 16 27 H 0.27 8.37 7.22 -40.82 -0.29 8.07 16 28 H 0.00 0.09 8.01 -51.93 -0.42 -0.33 16 29 H 0.03 0.72 7.62 -51.93 -0.40 0.32 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.35 6.03 8.58 -39.29 -0.34 5.69 16 33 H 0.33 4.85 9.06 -39.29 -0.36 4.50 16 34 H 0.40 4.29 8.47 -40.82 -0.35 3.94 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.89 8.03 -51.93 -0.42 0.47 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.10 0.64 7.99 -51.93 -0.41 0.22 16 39 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 40 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 354.28 15.07 5.34 5.34 Total: -1.00 -34.27 354.28 -10.35 -44.61 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -6.41 Total: 10.66 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -4.66 Total: -20.33 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.37 Total: -50.61 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.27 -10.35 -44.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591599607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.892 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds