Wall clock time and date at job start Tue Mar 31 2020 05:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 119.99883 * 2 1 4 4 C 1.50700 * 120.00366 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.47110 * 354.98804 * 4 2 1 6 6 C 1.52993 * 109.47561 * 234.98569 * 4 2 1 7 7 C 1.50702 * 109.47142 * 114.98226 * 4 2 1 8 8 O 1.20833 * 119.99715 * 354.17282 * 7 4 2 9 9 O 1.34225 * 120.00316 * 174.17245 * 7 4 2 10 10 C 1.45205 * 117.00166 * 179.97438 * 9 7 4 11 11 C 1.50702 * 109.47139 * 179.97438 * 10 9 7 12 12 C 1.38633 * 119.75114 * 269.73364 * 11 10 9 13 13 C 1.37617 * 120.24891 * 179.72378 * 12 11 10 14 14 C 1.40715 * 119.74516 * 0.56543 * 13 12 11 15 15 C 1.41396 * 120.24872 * 179.68887 * 14 13 12 16 16 H 1.07996 * 120.00560 * 153.53991 * 15 14 13 17 17 C 1.39953 * 119.99154 * 333.53982 * 15 14 13 18 18 N 1.30821 * 120.00545 * 342.03805 * 17 15 14 19 19 Si 1.86800 * 119.99675 * 162.04344 * 17 15 14 20 20 H 1.48504 * 109.47308 * 94.97831 * 19 17 15 21 21 H 1.48495 * 109.47056 * 214.98388 * 19 17 15 22 22 H 1.48505 * 109.47144 * 334.98043 * 19 17 15 23 23 C 1.40719 * 119.51162 * 359.70160 * 14 13 12 24 24 C 1.37621 * 119.74358 * 0.02562 * 23 14 13 25 25 H 1.07994 * 120.00031 * 5.07377 * 1 2 3 26 26 H 1.08001 * 119.99586 * 185.06972 * 1 2 3 27 27 H 1.09006 * 109.47051 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46892 * 299.99591 * 3 2 1 29 29 H 1.08999 * 109.47512 * 59.99934 * 3 2 1 30 30 H 1.08997 * 109.47193 * 179.97438 * 5 4 2 31 31 H 1.09004 * 109.46600 * 299.99707 * 5 4 2 32 32 H 1.09002 * 109.47011 * 59.99411 * 5 4 2 33 33 H 1.09003 * 109.47185 * 299.99779 * 6 4 2 34 34 H 1.08998 * 109.47350 * 60.00087 * 6 4 2 35 35 H 1.09007 * 109.47299 * 180.02562 * 6 4 2 36 36 H 1.08994 * 109.47437 * 300.00336 * 10 9 7 37 37 H 1.09006 * 109.46873 * 60.00331 * 10 9 7 38 38 H 1.08005 * 119.87510 * 359.97159 * 12 11 10 39 39 H 1.07999 * 120.12636 * 180.27772 * 13 12 11 40 40 H 0.96993 * 120.00488 * 180.02562 * 18 17 15 41 41 H 1.07995 * 120.13283 * 179.97438 * 23 14 13 42 42 H 1.07993 * 119.87773 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 1.0741 -2.4653 0.1271 6 6 3.0353 -1.3324 1.1819 7 6 2.8344 -1.4406 -1.2872 8 8 2.6961 -0.6200 -2.1633 9 8 3.6746 -2.4728 -1.4611 10 6 4.3834 -2.5400 -2.7267 11 6 5.2738 -3.7557 -2.7398 12 6 6.5791 -3.6575 -2.2832 13 6 7.3993 -4.7624 -2.2853 14 6 6.9123 -5.9926 -2.7645 15 6 7.7479 -7.1331 -2.7776 16 1 7.3145 -8.1208 -2.7242 17 6 9.1368 -6.9819 -2.8598 18 7 9.6484 -5.8505 -3.2719 19 14 10.2601 -8.3956 -2.3813 20 1 10.6279 -9.1683 -3.5949 21 1 11.4895 -7.8575 -1.7456 22 1 9.5559 -9.2848 -1.4228 23 6 5.5874 -6.0793 -3.2308 24 6 4.7832 -4.9626 -3.2141 25 1 -0.5400 0.9316 -0.0827 26 1 -0.5399 -0.9317 0.0827 27 1 3.1351 1.1059 -0.0005 28 1 1.8001 1.8766 -0.8900 29 1 1.8001 1.8767 0.8899 30 1 1.6191 -3.4092 0.1271 31 1 0.5166 -2.3672 1.0586 32 1 0.3818 -2.4458 -0.7145 33 1 3.7403 -0.5059 1.0917 34 1 2.4778 -1.2345 2.1134 35 1 3.5807 -2.2762 1.1820 36 1 3.6641 -2.6071 -3.5429 37 1 4.9911 -1.6436 -2.8507 38 1 6.9524 -2.7110 -1.9206 39 1 8.4144 -4.6847 -1.9249 40 1 10.6110 -5.7459 -3.3292 41 1 5.2034 -7.0183 -3.6011 42 1 3.7663 -5.0266 -3.5718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820504635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:07 Heat of formation + Delta-G solvation = -65.917769 kcal Electronic energy + Delta-G solvation = -22265.958719 eV Core-core repulsion = 18982.681739 eV Total energy + Delta-G solvation = -3283.276980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.151 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.53157 -37.96746 -37.21290 -35.81339 -33.86454 -32.19727 -30.70854 -29.38824 -28.71062 -27.24323 -26.09426 -24.50475 -23.45434 -21.17764 -21.06631 -20.04570 -18.07810 -17.39059 -16.98257 -16.28231 -16.00081 -15.39118 -15.25470 -14.43640 -14.31736 -13.90142 -13.64828 -13.23526 -13.14531 -12.78195 -12.58514 -12.41074 -12.25344 -12.15583 -12.04847 -11.98161 -11.82733 -11.53797 -11.28577 -11.13293 -11.09232 -10.84089 -10.61890 -10.61058 -10.12675 -10.04523 -9.68120 -9.47399 -9.23197 -9.17123 -7.56591 -7.45319 -6.87538 -4.46527 1.96019 2.47863 2.51693 2.97423 2.99681 3.02536 3.08308 3.46414 3.85994 4.35029 4.51594 4.62616 4.83602 5.09204 5.10494 5.44121 5.47610 5.54033 5.59330 5.60091 5.66236 5.66346 5.69126 5.73821 5.80755 5.91698 6.04241 6.07990 6.13646 6.24581 6.30460 6.46256 6.69352 6.85078 6.90327 6.97967 7.16277 7.24624 7.51189 7.72667 7.95114 7.99223 8.11398 8.18683 8.52998 8.78144 8.85921 10.07796 Molecular weight = 288.15amu Principal moments of inertia in cm(-1) A = 0.034209 B = 0.003010 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.296513 B = 9299.564532 C = 9314.833461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.098 4.098 3 C -0.114 4.114 4 C -0.022 4.022 5 C -0.143 4.143 6 C -0.140 4.140 7 C 0.465 3.535 8 O -0.513 6.513 9 O -0.346 6.346 10 C 0.135 3.865 11 C -0.233 4.233 12 C -0.075 4.075 13 C -0.168 4.168 14 C 0.120 3.880 15 C -0.459 4.459 16 H 0.080 0.920 17 C 0.076 3.924 18 N -0.787 5.787 19 Si 0.908 3.092 20 H -0.270 1.270 21 H -0.274 1.274 22 H -0.259 1.259 23 C -0.229 4.229 24 C -0.064 4.064 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.116 0.884 40 H 0.282 0.718 41 H 0.095 0.905 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.020 7.905 7.640 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.098 4.098 3 C -0.171 4.171 4 C -0.023 4.023 5 C -0.201 4.201 6 C -0.197 4.197 7 C 0.308 3.692 8 O -0.402 6.402 9 O -0.263 6.263 10 C 0.063 3.937 11 C -0.234 4.234 12 C -0.094 4.094 13 C -0.187 4.187 14 C 0.118 3.882 15 C -0.488 4.488 16 H 0.098 0.902 17 C -0.143 4.143 18 N -0.412 5.412 19 Si 0.732 3.268 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.183 1.183 23 C -0.248 4.248 24 C -0.083 4.083 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.134 0.866 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.783 8.238 7.278 15.399 hybrid contribution 0.639 -0.464 -0.130 0.800 sum -10.144 7.774 7.148 14.644 Atomic orbital electron populations 1.23789 0.95091 1.02384 1.02042 1.21298 0.95033 0.93960 0.99495 1.20791 1.00166 0.94339 1.01775 1.19516 0.95513 0.95269 0.92013 1.21938 0.98424 0.97047 1.02647 1.21856 0.98319 1.03756 0.95747 1.23395 0.77889 0.79244 0.88677 1.90615 1.63572 1.42040 1.43967 1.86691 1.52268 1.45594 1.41730 1.21712 0.92748 0.97632 0.81584 1.18662 0.94528 0.93784 1.16463 1.20526 0.93171 0.97302 0.98389 1.21228 0.99776 0.92877 1.04867 1.17676 0.91075 0.92913 0.86560 1.19652 0.90706 0.94288 1.44160 0.90171 1.25955 0.99232 0.96929 0.92140 1.69819 1.14272 1.25661 1.31435 0.86296 0.79305 0.81381 0.79781 1.19485 1.19935 1.18301 1.20966 0.96561 0.97112 1.10190 1.20389 0.97038 0.92633 0.98191 0.88140 0.87670 0.92148 0.91199 0.91664 0.90554 0.90880 0.91845 0.91951 0.91251 0.90416 0.92192 0.92114 0.89345 0.86596 0.90659 0.88699 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.96 13.34 29.02 0.39 -1.57 16 2 C -0.10 -1.13 4.29 -101.07 -0.43 -1.56 16 3 C -0.11 -1.23 9.01 36.00 0.32 -0.91 16 4 C -0.02 -0.28 0.77 -156.81 -0.12 -0.40 16 5 C -0.14 -1.54 7.11 37.16 0.26 -1.28 16 6 C -0.14 -1.54 8.13 37.15 0.30 -1.24 16 7 C 0.47 7.65 6.42 36.01 0.23 7.88 16 8 O -0.51 -9.51 15.32 -18.76 -0.29 -9.80 16 9 O -0.35 -6.33 9.92 -39.25 -0.39 -6.72 16 10 C 0.14 2.62 5.58 36.01 0.20 2.82 16 11 C -0.23 -5.15 5.54 -104.33 -0.58 -5.73 16 12 C -0.08 -1.75 9.67 -39.66 -0.38 -2.13 16 13 C -0.17 -4.29 8.68 -38.87 -0.34 -4.63 16 14 C 0.12 3.15 5.55 -106.82 -0.59 2.56 16 15 C -0.46 -11.88 9.04 -37.74 -0.34 -12.22 16 16 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 17 C 0.08 1.87 5.12 -17.34 -0.09 1.78 16 18 N -0.79 -19.88 11.10 55.55 0.62 -19.26 16 19 Si 0.91 18.11 29.60 -169.99 -5.03 13.07 16 20 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 23 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 24 C -0.06 -1.43 9.67 -39.66 -0.38 -1.82 16 25 H 0.10 0.87 8.05 -52.49 -0.42 0.45 16 26 H 0.11 0.94 5.71 -52.49 -0.30 0.64 16 27 H 0.06 0.70 6.82 -51.93 -0.35 0.34 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.62 7.65 -51.93 -0.40 0.22 16 32 H 0.06 0.68 7.35 -51.93 -0.38 0.30 16 33 H 0.06 0.68 6.91 -51.93 -0.36 0.33 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.92 8.01 -51.93 -0.42 0.51 16 36 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 37 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 38 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 39 H 0.12 3.03 6.32 -52.49 -0.33 2.70 16 40 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 41 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 42 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -28.10 350.88 -8.04 -36.14 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.31 Total: 5.67 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -1.93 Total: -24.38 kcal Atomic # 7 Polarization: -19.88 SS G_CDS: 0.62 Total: -19.26 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.68 Total: -16.53 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.10 -8.04 -36.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820504635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.778 kcal (2) G-P(sol) polarization free energy of solvation -28.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds