Wall clock time and date at job start Tue Mar 31 2020 05:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 119.99883 * 2 1 4 4 C 1.50700 * 120.00366 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.47110 * 354.98804 * 4 2 1 6 6 C 1.52993 * 109.47561 * 234.98569 * 4 2 1 7 7 C 1.50702 * 109.47142 * 114.98226 * 4 2 1 8 8 O 1.20833 * 119.99715 * 354.17282 * 7 4 2 9 9 O 1.34225 * 120.00316 * 174.17245 * 7 4 2 10 10 C 1.45205 * 117.00166 * 179.97438 * 9 7 4 11 11 C 1.50702 * 109.47139 * 179.97438 * 10 9 7 12 12 C 1.38633 * 119.75114 * 269.73364 * 11 10 9 13 13 C 1.37617 * 120.24891 * 179.72378 * 12 11 10 14 14 C 1.40715 * 119.74516 * 0.56543 * 13 12 11 15 15 C 1.41396 * 120.24872 * 179.68887 * 14 13 12 16 16 H 1.07996 * 120.00560 * 153.53991 * 15 14 13 17 17 C 1.39953 * 119.99154 * 333.53982 * 15 14 13 18 18 N 1.30821 * 120.00545 * 342.03805 * 17 15 14 19 19 Si 1.86800 * 119.99675 * 162.04344 * 17 15 14 20 20 H 1.48504 * 109.47308 * 94.97831 * 19 17 15 21 21 H 1.48495 * 109.47056 * 214.98388 * 19 17 15 22 22 H 1.48505 * 109.47144 * 334.98043 * 19 17 15 23 23 C 1.40719 * 119.51162 * 359.70160 * 14 13 12 24 24 C 1.37621 * 119.74358 * 0.02562 * 23 14 13 25 25 H 1.07994 * 120.00031 * 5.07377 * 1 2 3 26 26 H 1.08001 * 119.99586 * 185.06972 * 1 2 3 27 27 H 1.09006 * 109.47051 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46892 * 299.99591 * 3 2 1 29 29 H 1.08999 * 109.47512 * 59.99934 * 3 2 1 30 30 H 1.08997 * 109.47193 * 179.97438 * 5 4 2 31 31 H 1.09004 * 109.46600 * 299.99707 * 5 4 2 32 32 H 1.09002 * 109.47011 * 59.99411 * 5 4 2 33 33 H 1.09003 * 109.47185 * 299.99779 * 6 4 2 34 34 H 1.08998 * 109.47350 * 60.00087 * 6 4 2 35 35 H 1.09007 * 109.47299 * 180.02562 * 6 4 2 36 36 H 1.08994 * 109.47437 * 300.00336 * 10 9 7 37 37 H 1.09006 * 109.46873 * 60.00331 * 10 9 7 38 38 H 1.08005 * 119.87510 * 359.97159 * 12 11 10 39 39 H 1.07999 * 120.12636 * 180.27772 * 13 12 11 40 40 H 0.96993 * 120.00488 * 180.02562 * 18 17 15 41 41 H 1.07995 * 120.13283 * 179.97438 * 23 14 13 42 42 H 1.07993 * 119.87773 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 1.0741 -2.4653 0.1271 6 6 3.0353 -1.3324 1.1819 7 6 2.8344 -1.4406 -1.2872 8 8 2.6961 -0.6200 -2.1633 9 8 3.6746 -2.4728 -1.4611 10 6 4.3834 -2.5400 -2.7267 11 6 5.2738 -3.7557 -2.7398 12 6 6.5791 -3.6575 -2.2832 13 6 7.3993 -4.7624 -2.2853 14 6 6.9123 -5.9926 -2.7645 15 6 7.7479 -7.1331 -2.7776 16 1 7.3145 -8.1208 -2.7242 17 6 9.1368 -6.9819 -2.8598 18 7 9.6484 -5.8505 -3.2719 19 14 10.2601 -8.3956 -2.3813 20 1 10.6279 -9.1683 -3.5949 21 1 11.4895 -7.8575 -1.7456 22 1 9.5559 -9.2848 -1.4228 23 6 5.5874 -6.0793 -3.2308 24 6 4.7832 -4.9626 -3.2141 25 1 -0.5400 0.9316 -0.0827 26 1 -0.5399 -0.9317 0.0827 27 1 3.1351 1.1059 -0.0005 28 1 1.8001 1.8766 -0.8900 29 1 1.8001 1.8767 0.8899 30 1 1.6191 -3.4092 0.1271 31 1 0.5166 -2.3672 1.0586 32 1 0.3818 -2.4458 -0.7145 33 1 3.7403 -0.5059 1.0917 34 1 2.4778 -1.2345 2.1134 35 1 3.5807 -2.2762 1.1820 36 1 3.6641 -2.6071 -3.5429 37 1 4.9911 -1.6436 -2.8507 38 1 6.9524 -2.7110 -1.9206 39 1 8.4144 -4.6847 -1.9249 40 1 10.6110 -5.7459 -3.3292 41 1 5.2034 -7.0183 -3.6011 42 1 3.7663 -5.0266 -3.5718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820504635.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:06 Heat of formation + Delta-G solvation = -77.522879 kcal Electronic energy + Delta-G solvation = -22266.461954 eV Core-core repulsion = 18982.681739 eV Total energy + Delta-G solvation = -3283.780215 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.151 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.81342 -39.61548 -38.47591 -37.19979 -35.68306 -33.17396 -32.41363 -31.25715 -29.54933 -28.97107 -26.92356 -25.98694 -24.80107 -22.97685 -22.36831 -21.79975 -19.27720 -19.16133 -18.32416 -17.45083 -17.36459 -17.03431 -16.36032 -15.94203 -15.65305 -15.58507 -14.99603 -14.57899 -14.21565 -14.07096 -13.94663 -13.87651 -13.44736 -13.41282 -13.20365 -13.10724 -13.06942 -13.01550 -12.79137 -12.66283 -12.40871 -12.22059 -11.97052 -11.69436 -11.66435 -11.54359 -11.31947 -11.24145 -11.03785 -10.00373 -9.44725 -9.33953 -8.70142 -6.40309 0.69333 1.08685 1.15749 1.19011 1.38639 1.45632 1.54195 2.08345 2.19706 2.72206 3.42542 3.65344 3.74729 3.87480 3.99275 4.06987 4.07645 4.29485 4.45688 4.47348 4.52926 4.60558 4.68793 4.73335 4.79968 4.83191 4.87778 4.98546 5.01107 5.08984 5.11601 5.23169 5.26176 5.27273 5.36991 5.50285 5.63957 5.66943 5.86012 5.89191 6.04230 6.11896 6.30708 6.62689 6.76480 6.87688 6.95600 8.28057 Molecular weight = 288.15amu Principal moments of inertia in cm(-1) A = 0.034209 B = 0.003010 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.296513 B = 9299.564532 C = 9314.833461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.124 4.124 3 C -0.113 4.113 4 C -0.019 4.019 5 C -0.142 4.142 6 C -0.138 4.138 7 C 0.462 3.538 8 O -0.536 6.536 9 O -0.354 6.354 10 C 0.141 3.859 11 C -0.228 4.228 12 C -0.080 4.080 13 C -0.190 4.190 14 C 0.090 3.910 15 C -0.495 4.495 16 H 0.080 0.920 17 C 0.036 3.964 18 N -0.820 5.820 19 Si 0.983 3.017 20 H -0.262 1.262 21 H -0.266 1.266 22 H -0.257 1.257 23 C -0.243 4.243 24 C -0.065 4.065 25 H 0.115 0.885 26 H 0.118 0.882 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.095 0.905 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.290 0.710 41 H 0.104 0.896 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.514 8.182 8.728 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.124 4.124 3 C -0.169 4.169 4 C -0.020 4.020 5 C -0.199 4.199 6 C -0.195 4.195 7 C 0.306 3.694 8 O -0.426 6.426 9 O -0.271 6.271 10 C 0.068 3.932 11 C -0.229 4.229 12 C -0.099 4.099 13 C -0.209 4.209 14 C 0.088 3.912 15 C -0.524 4.524 16 H 0.098 0.902 17 C -0.180 4.180 18 N -0.446 5.446 19 Si 0.804 3.196 20 H -0.186 1.186 21 H -0.190 1.190 22 H -0.181 1.181 23 C -0.262 4.262 24 C -0.084 4.084 25 H 0.133 0.867 26 H 0.136 0.864 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.114 0.886 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.295 8.528 8.368 17.144 hybrid contribution 0.944 -0.409 -0.482 1.136 sum -11.351 8.119 7.887 16.030 Atomic orbital electron populations 1.24050 0.94552 1.03713 0.99282 1.21341 0.95654 0.93481 1.01936 1.20786 0.99239 0.94466 1.02430 1.19653 0.95689 0.96747 0.89896 1.21977 0.98047 0.95716 1.04153 1.21870 0.98275 1.02910 0.96415 1.24318 0.77154 0.78027 0.89865 1.90599 1.64225 1.42620 1.45179 1.86667 1.52849 1.46762 1.40829 1.21509 0.92794 0.96302 0.82579 1.18957 0.94487 0.94756 1.14685 1.20749 0.93612 0.97382 0.98117 1.21192 0.99605 0.93791 1.06336 1.18028 0.92267 0.93475 0.87464 1.19907 0.91999 0.94292 1.46217 0.90177 1.26812 1.00187 0.99665 0.91316 1.69866 1.15084 1.27614 1.32015 0.85176 0.77116 0.77819 0.79538 1.18647 1.19008 1.18087 1.21178 0.96303 0.98278 1.10443 1.20694 0.98124 0.92073 0.97459 0.86698 0.86435 0.93576 0.92089 0.89482 0.91497 0.88022 0.91860 0.92337 0.88580 0.91645 0.91308 0.91847 0.87704 0.88133 0.89890 0.87832 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.00 13.34 67.78 0.90 -2.10 16 2 C -0.12 -2.58 4.29 -16.48 -0.07 -2.65 16 3 C -0.11 -2.26 9.01 71.24 0.64 -1.62 16 4 C -0.02 -0.44 0.77 -53.67 -0.04 -0.48 16 5 C -0.14 -2.70 7.11 71.98 0.51 -2.18 16 6 C -0.14 -2.81 8.13 71.98 0.59 -2.23 16 7 C 0.46 14.71 6.42 71.24 0.46 15.17 16 8 O -0.54 -19.46 15.32 21.94 0.34 -19.13 16 9 O -0.35 -12.65 9.92 -51.37 -0.51 -13.16 16 10 C 0.14 5.31 5.58 71.24 0.40 5.71 16 11 C -0.23 -9.97 5.54 -19.67 -0.11 -10.08 16 12 C -0.08 -3.77 9.67 22.22 0.21 -3.56 16 13 C -0.19 -10.00 8.68 22.73 0.20 -9.81 16 14 C 0.09 4.85 5.55 -21.29 -0.12 4.74 16 15 C -0.50 -26.38 9.04 23.46 0.21 -26.17 16 16 H 0.08 4.09 7.91 -2.91 -0.02 4.06 16 17 C 0.04 1.79 5.12 85.26 0.44 2.23 16 18 N -0.82 -42.45 11.10 21.83 0.24 -42.21 16 19 Si 0.98 37.36 29.60 68.60 2.03 39.39 16 20 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 21 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 22 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 23 C -0.24 -11.87 9.80 22.73 0.22 -11.65 16 24 C -0.07 -2.89 9.67 22.22 0.21 -2.67 16 25 H 0.11 1.59 8.05 -2.91 -0.02 1.57 16 26 H 0.12 1.65 5.71 -2.91 -0.02 1.63 16 27 H 0.05 1.03 6.82 -2.38 -0.02 1.02 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.34 7.65 -2.39 -0.02 1.33 16 32 H 0.06 1.20 7.35 -2.39 -0.02 1.18 16 33 H 0.06 1.22 6.91 -2.39 -0.02 1.21 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.49 8.01 -2.38 -0.02 1.47 16 36 H 0.07 2.47 8.07 -2.39 -0.02 2.45 16 37 H 0.06 2.35 8.07 -2.38 -0.02 2.33 16 38 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.10 5.51 6.32 -2.91 -0.02 5.49 16 40 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 41 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 42 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -61.44 350.88 7.75 -53.69 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 1.00 Total: 28.77 kcal Atomic # 6 Polarization: -52.01 SS G_CDS: 4.66 Total: -47.35 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.24 Total: -42.21 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.17 Total: -32.29 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 2.03 Total: 39.39 kcal Total: -61.44 7.75 -53.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820504635.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.833 kcal (2) G-P(sol) polarization free energy of solvation -61.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds