Wall clock time and date at job start Tue Mar 31 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47325 * 2 1 4 4 H 1.09000 * 109.46999 * 305.74106 * 3 2 1 5 5 C 1.50699 * 109.46918 * 185.74024 * 3 2 1 6 6 H 1.08005 * 119.99841 * 275.06281 * 5 3 2 7 7 C 1.37874 * 120.00181 * 95.06892 * 5 3 2 8 8 N 1.31514 * 120.00460 * 174.57331 * 7 5 3 9 9 Si 1.86798 * 119.99893 * 354.84116 * 7 5 3 10 10 H 1.48497 * 109.47436 * 94.70134 * 9 7 5 11 11 H 1.48509 * 109.46963 * 214.70511 * 9 7 5 12 12 H 1.48501 * 109.46965 * 334.70046 * 9 7 5 13 13 N 1.46497 * 109.47081 * 65.74073 * 3 2 1 14 14 C 1.38591 * 119.99689 * 274.99943 * 13 3 2 15 15 C 1.39382 * 120.50273 * 0.02562 * 14 13 3 16 16 C 1.38854 * 118.27477 * 180.02562 * 15 14 13 17 17 N 1.39671 * 120.46939 * 180.02562 * 16 15 14 18 18 C 1.34853 * 126.85258 * 179.71443 * 17 16 15 19 19 N 1.30792 * 108.01276 * 179.83352 * 18 17 16 20 20 C 1.33318 * 109.84645 * 0.43888 * 19 18 17 21 21 N 1.30688 * 109.02299 * 359.72662 * 20 19 18 22 22 N 1.33068 * 119.06951 * 0.02562 * 16 15 14 23 23 C 1.31716 * 120.91223 * 359.97438 * 22 16 15 24 24 C 1.50697 * 119.04081 * 180.02562 * 23 22 16 25 25 N 1.31768 * 121.90861 * 359.71853 * 23 22 16 26 26 H 1.08997 * 109.46896 * 59.99752 * 1 2 3 27 27 H 1.08995 * 109.46825 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46543 * 300.00172 * 1 2 3 29 29 H 1.09003 * 109.47176 * 239.99887 * 2 1 3 30 30 H 1.09002 * 109.47269 * 119.99972 * 2 1 3 31 31 H 0.96996 * 120.00732 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00448 * 94.99467 * 13 3 2 33 33 H 1.08002 * 120.86274 * 0.02562 * 15 14 13 34 34 H 1.08001 * 125.99370 * 0.02562 * 18 17 16 35 35 H 1.07998 * 125.48400 * 179.74885 * 20 19 18 36 36 H 1.09001 * 109.47471 * 90.00321 * 24 23 22 37 37 H 1.09000 * 109.46911 * 210.00305 * 24 23 22 38 38 H 1.09003 * 109.47578 * 330.00103 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5953 1.9851 -0.8341 5 6 3.5404 1.4448 -0.1421 6 1 4.1657 1.3320 0.7313 7 6 4.1147 1.5909 -1.3870 8 7 5.4204 1.7001 -1.5001 9 14 3.0377 1.6413 -2.9124 10 1 2.7455 3.0537 -3.2656 11 1 3.7464 0.9853 -4.0406 12 1 1.7650 0.9248 -2.6436 13 7 1.6678 2.0921 1.2592 14 6 0.4176 2.6745 1.3953 15 6 -0.4938 2.6479 0.3411 16 6 -1.7329 3.2460 0.5277 17 7 -2.6812 3.2456 -0.4978 18 6 -3.9185 3.7801 -0.4555 19 7 -4.4882 3.5736 -1.6145 20 6 -3.6566 2.9066 -2.4151 21 7 -2.5384 2.6830 -1.7767 22 7 -2.0044 3.8197 1.6973 23 6 -1.1170 3.8248 2.6706 24 6 -1.4692 4.4861 3.9781 25 7 0.0675 3.2633 2.5362 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8245 1.8033 -2.3758 32 1 2.2963 2.1145 1.9978 33 1 -0.2427 2.1743 -0.5965 34 1 -4.3603 4.2921 0.3867 35 1 -3.8722 2.6008 -3.4282 36 1 -1.9312 3.7555 4.6421 37 1 -0.5641 4.8778 4.4425 38 1 -2.1668 5.3035 3.7957 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161055920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:13 Heat of formation + Delta-G solvation = 151.886805 kcal Electronic energy + Delta-G solvation = -22906.059937 eV Core-core repulsion = 19593.272830 eV Total energy + Delta-G solvation = -3312.787106 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.39796 -40.76198 -37.26257 -35.06269 -33.44050 -32.22122 -31.60592 -31.15162 -30.72222 -28.41252 -27.40659 -24.71428 -23.21803 -22.67821 -21.75740 -21.61615 -19.81215 -18.63577 -18.10269 -16.76279 -16.14592 -15.77647 -15.40872 -15.16933 -14.86582 -14.73651 -14.26702 -13.93746 -13.64469 -13.50338 -12.97720 -12.63585 -12.43299 -12.28497 -12.22053 -12.09242 -11.74939 -11.14832 -10.98044 -10.86065 -10.63986 -10.35119 -10.29753 -10.01225 -10.00488 -9.93207 -9.41690 -9.17305 -9.01800 -8.84106 -7.55281 -6.40350 -4.45693 0.65951 1.43552 1.88638 2.08676 2.79132 3.09465 3.20520 3.23400 3.50605 4.03190 4.04081 4.14766 4.20946 4.43227 4.70947 4.98078 5.07628 5.18095 5.41119 5.53527 5.55495 5.69621 5.73864 5.76458 5.88609 5.90866 6.08583 6.17895 6.22951 6.34758 6.48018 6.59927 6.67078 6.85104 7.01071 7.04591 7.23035 7.58628 7.86975 8.04963 8.27063 8.49366 8.63124 9.18885 10.70932 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.014475 B = 0.006212 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.952247 B = 4506.596377 C = 5798.016442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.131 4.131 3 C 0.239 3.761 4 H 0.046 0.954 5 C -0.534 4.534 6 H 0.083 0.917 7 C 0.085 3.915 8 N -0.879 5.879 9 Si 0.866 3.134 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.255 1.255 13 N -0.664 5.664 14 C 0.461 3.539 15 C -0.283 4.283 16 C 0.417 3.583 17 N -0.326 5.326 18 C 0.291 3.709 19 N -0.544 5.544 20 C 0.207 3.793 21 N -0.301 5.301 22 N -0.596 5.596 23 C 0.385 3.615 24 C -0.079 4.079 25 N -0.589 5.589 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.270 0.730 32 H 0.407 0.593 33 H 0.161 0.839 34 H 0.227 0.773 35 H 0.225 0.775 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.384 2.727 4.480 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.170 4.170 3 C 0.136 3.864 4 H 0.064 0.936 5 C -0.572 4.572 6 H 0.101 0.899 7 C -0.121 4.121 8 N -0.514 5.514 9 Si 0.692 3.308 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.179 1.179 13 N -0.289 5.289 14 C 0.213 3.787 15 C -0.315 4.315 16 C 0.187 3.813 17 N -0.111 5.111 18 C -0.005 4.005 19 N -0.271 5.271 20 C -0.096 4.096 21 N -0.126 5.126 22 N -0.324 5.324 23 C 0.114 3.886 24 C -0.137 4.137 25 N -0.317 5.317 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.243 0.757 33 H 0.178 0.822 34 H 0.243 0.757 35 H 0.241 0.759 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.008 2.738 4.520 15.911 hybrid contribution 0.033 -0.329 -1.340 1.380 sum -14.975 2.409 3.180 15.497 Atomic orbital electron populations 1.22249 0.98027 1.00332 1.00991 1.22211 0.93182 0.99440 1.02175 1.19365 0.96640 0.88946 0.81412 0.93605 1.20877 0.88000 1.52534 0.95799 0.89936 1.24913 0.94983 0.93247 0.98923 1.69873 1.09849 1.46813 1.24910 0.87012 0.81515 0.79304 0.82976 1.19892 1.20575 1.17896 1.45781 1.10255 1.54451 1.18426 1.18594 0.87042 0.85659 0.87388 1.21937 0.94250 1.11449 1.03833 1.17382 0.85974 0.92522 0.85390 1.47424 1.11917 1.41760 1.10009 1.26387 0.82561 0.93986 0.97596 1.70704 1.32806 1.21517 1.02033 1.26268 0.86989 0.95373 1.01005 1.78283 1.23636 1.20993 0.89660 1.67364 1.37579 1.27031 1.00379 1.22536 0.83356 0.89271 0.93439 1.20518 1.03032 1.00232 0.89967 1.67870 1.20591 1.18703 1.24571 0.92755 0.93980 0.93408 0.91260 0.92209 0.91969 0.75662 0.82161 0.75661 0.75903 0.89710 0.89473 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 8.23 37.16 0.31 -2.50 16 2 C -0.13 -2.56 5.28 -26.73 -0.14 -2.70 16 3 C 0.24 5.14 1.74 -69.08 -0.12 5.02 16 4 H 0.05 1.04 3.97 -51.93 -0.21 0.83 16 5 C -0.53 -13.54 9.04 -34.44 -0.31 -13.86 16 6 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 7 C 0.09 2.26 5.47 -17.82 -0.10 2.16 16 8 N -0.88 -24.90 13.96 55.43 0.77 -24.12 16 9 Si 0.87 19.96 26.56 -169.99 -4.51 15.45 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.25 -5.55 6.20 56.52 0.35 -5.20 16 13 N -0.66 -12.97 5.17 -54.94 -0.28 -13.26 16 14 C 0.46 8.60 6.56 -154.75 -1.02 7.58 16 15 C -0.28 -5.22 6.41 -38.93 -0.25 -5.47 16 16 C 0.42 7.06 7.59 -153.90 -1.17 5.89 16 17 N -0.33 -5.13 3.80 -13.23 -0.05 -5.18 16 18 C 0.29 3.80 12.30 -90.30 -1.11 2.69 16 19 N -0.54 -7.29 11.19 -15.73 -0.18 -7.47 16 20 C 0.21 2.67 13.03 -91.77 -1.20 1.48 16 21 N -0.30 -4.80 12.11 29.30 0.35 -4.44 16 22 N -0.60 -9.17 9.92 -9.87 -0.10 -9.27 16 23 C 0.38 5.75 7.64 -157.29 -1.20 4.54 16 24 C -0.08 -0.79 10.31 36.00 0.37 -0.42 16 25 N -0.59 -10.12 10.36 -10.01 -0.10 -10.22 16 26 H 0.05 0.99 6.39 -51.93 -0.33 0.65 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.86 5.36 -51.93 -0.28 0.58 16 29 H 0.07 1.39 7.31 -51.93 -0.38 1.01 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.41 7.68 8.72 -40.82 -0.36 7.32 16 33 H 0.16 3.16 3.86 -52.49 -0.20 2.96 16 34 H 0.23 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.22 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 315.91 15.07 4.76 4.76 Total: -1.00 -29.72 315.91 -9.60 -39.32 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -4.32 Total: 10.00 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -5.94 Total: 4.44 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: 0.42 Total: -73.96 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.51 Total: 15.45 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.72 -9.60 -39.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.207 kcal (2) G-P(sol) polarization free energy of solvation -29.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds