Wall clock time and date at job start Tue Mar 31 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47325 * 2 1 4 4 H 1.09000 * 109.46999 * 305.74106 * 3 2 1 5 5 C 1.50699 * 109.46918 * 185.74024 * 3 2 1 6 6 H 1.08005 * 119.99841 * 275.06281 * 5 3 2 7 7 C 1.37874 * 120.00181 * 95.06892 * 5 3 2 8 8 N 1.31514 * 120.00460 * 174.57331 * 7 5 3 9 9 Si 1.86798 * 119.99893 * 354.84116 * 7 5 3 10 10 H 1.48497 * 109.47436 * 94.70134 * 9 7 5 11 11 H 1.48509 * 109.46963 * 214.70511 * 9 7 5 12 12 H 1.48501 * 109.46965 * 334.70046 * 9 7 5 13 13 N 1.46497 * 109.47081 * 65.74073 * 3 2 1 14 14 C 1.38591 * 119.99689 * 274.99943 * 13 3 2 15 15 C 1.39382 * 120.50273 * 0.02562 * 14 13 3 16 16 C 1.38854 * 118.27477 * 180.02562 * 15 14 13 17 17 N 1.39671 * 120.46939 * 180.02562 * 16 15 14 18 18 C 1.34853 * 126.85258 * 179.71443 * 17 16 15 19 19 N 1.30792 * 108.01276 * 179.83352 * 18 17 16 20 20 C 1.33318 * 109.84645 * 0.43888 * 19 18 17 21 21 N 1.30688 * 109.02299 * 359.72662 * 20 19 18 22 22 N 1.33068 * 119.06951 * 0.02562 * 16 15 14 23 23 C 1.31716 * 120.91223 * 359.97438 * 22 16 15 24 24 C 1.50697 * 119.04081 * 180.02562 * 23 22 16 25 25 N 1.31768 * 121.90861 * 359.71853 * 23 22 16 26 26 H 1.08997 * 109.46896 * 59.99752 * 1 2 3 27 27 H 1.08995 * 109.46825 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46543 * 300.00172 * 1 2 3 29 29 H 1.09003 * 109.47176 * 239.99887 * 2 1 3 30 30 H 1.09002 * 109.47269 * 119.99972 * 2 1 3 31 31 H 0.96996 * 120.00732 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00448 * 94.99467 * 13 3 2 33 33 H 1.08002 * 120.86274 * 0.02562 * 15 14 13 34 34 H 1.08001 * 125.99370 * 0.02562 * 18 17 16 35 35 H 1.07998 * 125.48400 * 179.74885 * 20 19 18 36 36 H 1.09001 * 109.47471 * 90.00321 * 24 23 22 37 37 H 1.09000 * 109.46911 * 210.00305 * 24 23 22 38 38 H 1.09003 * 109.47578 * 330.00103 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5953 1.9851 -0.8341 5 6 3.5404 1.4448 -0.1421 6 1 4.1657 1.3320 0.7313 7 6 4.1147 1.5909 -1.3870 8 7 5.4204 1.7001 -1.5001 9 14 3.0377 1.6413 -2.9124 10 1 2.7455 3.0537 -3.2656 11 1 3.7464 0.9853 -4.0406 12 1 1.7650 0.9248 -2.6436 13 7 1.6678 2.0921 1.2592 14 6 0.4176 2.6745 1.3953 15 6 -0.4938 2.6479 0.3411 16 6 -1.7329 3.2460 0.5277 17 7 -2.6812 3.2456 -0.4978 18 6 -3.9185 3.7801 -0.4555 19 7 -4.4882 3.5736 -1.6145 20 6 -3.6566 2.9066 -2.4151 21 7 -2.5384 2.6830 -1.7767 22 7 -2.0044 3.8197 1.6973 23 6 -1.1170 3.8248 2.6706 24 6 -1.4692 4.4861 3.9781 25 7 0.0675 3.2633 2.5362 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8245 1.8033 -2.3758 32 1 2.2963 2.1145 1.9978 33 1 -0.2427 2.1743 -0.5965 34 1 -4.3603 4.2921 0.3867 35 1 -3.8722 2.6008 -3.4282 36 1 -1.9312 3.7555 4.6421 37 1 -0.5641 4.8778 4.4425 38 1 -2.1668 5.3035 3.7957 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161055920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:13 Heat of formation + Delta-G solvation = 135.373123 kcal Electronic energy + Delta-G solvation = -22906.776024 eV Core-core repulsion = 19593.272830 eV Total energy + Delta-G solvation = -3313.503193 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 288.139 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.47848 -42.03767 -38.78829 -36.26971 -35.07161 -33.92526 -32.71915 -32.33520 -32.06807 -29.61760 -29.01360 -25.91055 -24.88571 -23.95438 -22.94363 -22.78111 -21.29713 -20.03852 -19.49798 -18.43758 -17.39281 -17.23322 -16.71205 -16.48070 -16.22878 -16.08303 -15.49183 -15.19631 -15.03570 -14.81599 -14.63577 -13.91193 -13.78946 -13.57425 -13.38030 -13.17282 -13.08817 -12.94977 -12.60965 -12.31430 -12.07707 -11.87363 -11.68527 -11.42447 -11.36767 -11.21226 -11.08059 -10.87201 -10.46220 -10.23909 -9.02391 -8.44727 -6.52802 -0.53328 0.15523 0.76211 0.91376 1.25705 1.32055 1.40129 1.79324 2.04936 2.21793 2.75818 2.93855 2.97935 3.23684 3.36323 3.54109 3.92481 3.98959 4.11995 4.24246 4.25289 4.36074 4.49023 4.59278 4.80189 4.83950 4.86411 4.99473 5.02733 5.06328 5.12102 5.24729 5.32606 5.38007 5.43437 5.61181 5.80034 5.93548 6.32914 6.51178 6.68491 6.84279 7.13085 7.21166 8.70340 Molecular weight = 288.14amu Principal moments of inertia in cm(-1) A = 0.014475 B = 0.006212 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.952247 B = 4506.596377 C = 5798.016442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.251 3.749 4 H 0.038 0.962 5 C -0.532 4.532 6 H 0.051 0.949 7 C 0.035 3.965 8 N -0.928 5.928 9 Si 0.921 3.079 10 H -0.278 1.278 11 H -0.276 1.276 12 H -0.236 1.236 13 N -0.674 5.674 14 C 0.455 3.545 15 C -0.304 4.304 16 C 0.424 3.576 17 N -0.342 5.342 18 C 0.300 3.700 19 N -0.553 5.553 20 C 0.218 3.782 21 N -0.342 5.342 22 N -0.585 5.585 23 C 0.380 3.620 24 C -0.075 4.075 25 N -0.600 5.600 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.272 0.728 32 H 0.407 0.593 33 H 0.147 0.853 34 H 0.257 0.743 35 H 0.261 0.739 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.627 3.235 4.754 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.147 3.853 4 H 0.055 0.945 5 C -0.570 4.570 6 H 0.069 0.931 7 C -0.167 4.167 8 N -0.565 5.565 9 Si 0.744 3.256 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.158 1.158 13 N -0.301 5.301 14 C 0.208 3.792 15 C -0.336 4.336 16 C 0.192 3.808 17 N -0.127 5.127 18 C 0.005 3.995 19 N -0.279 5.279 20 C -0.084 4.084 21 N -0.167 5.167 22 N -0.311 5.311 23 C 0.110 3.890 24 C -0.134 4.134 25 N -0.328 5.328 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.243 0.757 33 H 0.164 0.836 34 H 0.273 0.727 35 H 0.277 0.723 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.302 3.255 4.816 19.203 hybrid contribution 0.895 -0.398 -1.319 1.643 sum -17.407 2.857 3.497 17.983 Atomic orbital electron populations 1.22083 0.96066 1.01416 1.00567 1.22094 0.94793 0.97776 1.01972 1.19075 0.93896 0.90215 0.82108 0.94462 1.21092 0.90043 1.51231 0.94644 0.93080 1.25646 0.95926 0.93251 1.01850 1.69991 1.11633 1.49272 1.25635 0.86139 0.80728 0.79148 0.79583 1.20337 1.20133 1.15848 1.45368 1.11200 1.55801 1.17692 1.18610 0.86543 0.85867 0.88189 1.21804 0.95257 1.13206 1.03314 1.17535 0.85769 0.91452 0.85998 1.47463 1.12459 1.42888 1.09936 1.27098 0.81507 0.92662 0.98273 1.70795 1.32860 1.21890 1.02306 1.27065 0.85822 0.93542 1.01995 1.78282 1.25401 1.22783 0.90235 1.67562 1.37284 1.26416 0.99864 1.23601 0.82399 0.88112 0.94839 1.20729 1.04055 1.00992 0.87586 1.67941 1.21821 1.19067 1.23986 0.93259 0.91999 0.93795 0.91845 0.92036 0.91904 0.75699 0.83587 0.72710 0.72318 0.87630 0.88725 0.87640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 8.23 71.98 0.59 -4.32 16 2 C -0.13 -4.93 5.28 30.60 0.16 -4.77 16 3 C 0.25 10.92 1.74 44.25 0.08 11.00 16 4 H 0.04 1.70 3.97 -2.39 -0.01 1.69 16 5 C -0.53 -27.87 9.04 25.60 0.23 -27.64 16 6 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 7 C 0.03 1.87 5.47 84.65 0.46 2.34 16 8 N -0.93 -54.36 13.96 21.45 0.30 -54.06 16 9 Si 0.92 41.65 26.56 68.60 1.82 43.48 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.24 -9.81 6.20 99.48 0.62 -9.19 16 13 N -0.67 -26.74 5.17 -327.74 -1.69 -28.44 16 14 C 0.45 16.80 6.56 133.06 0.87 17.67 16 15 C -0.30 -11.04 6.41 22.69 0.15 -10.89 16 16 C 0.42 13.69 7.59 132.57 1.01 14.70 16 17 N -0.34 -10.10 3.80 -195.77 -0.74 -10.84 16 18 C 0.30 6.99 12.30 180.24 2.22 9.21 16 19 N -0.55 -13.23 11.19 -203.67 -2.28 -15.51 16 20 C 0.22 5.07 13.03 180.75 2.35 7.43 16 21 N -0.34 -10.33 12.11 -61.21 -0.74 -11.07 16 22 N -0.58 -16.55 9.92 -185.15 -1.84 -18.39 16 23 C 0.38 10.47 7.64 138.78 1.06 11.53 16 24 C -0.08 -1.25 10.31 71.24 0.73 -0.51 16 25 N -0.60 -19.92 10.36 -185.58 -1.92 -21.84 16 26 H 0.05 1.73 6.39 -2.39 -0.02 1.72 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.04 1.53 5.36 -2.39 -0.01 1.52 16 29 H 0.06 2.51 7.31 -2.39 -0.02 2.50 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.41 15.83 8.72 -92.71 -0.81 15.02 16 33 H 0.15 5.73 3.86 -2.91 -0.01 5.71 16 34 H 0.26 3.99 8.06 -2.91 -0.02 3.97 16 35 H 0.26 3.59 8.06 -2.91 -0.02 3.57 16 36 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -65.62 315.91 3.04 -62.58 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.22 Total: 28.36 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 9.92 Total: 25.74 kcal Atomic # 7 Polarization: -151.24 SS G_CDS: -8.92 Total: -160.16 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.82 Total: 43.48 kcal Total: -65.62 3.04 -62.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161055920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.957 kcal (2) G-P(sol) polarization free energy of solvation -65.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds