Wall clock time and date at job start Tue Mar 31 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46920 * 2 1 4 4 O 1.42899 * 109.47539 * 239.99285 * 2 1 3 5 5 C 1.35633 * 116.99720 * 84.95555 * 4 2 1 6 6 C 1.38666 * 120.16589 * 354.75771 * 5 4 2 7 7 C 1.38086 * 120.09411 * 180.02562 * 6 5 4 8 8 C 1.38687 * 120.41836 * 359.97438 * 7 6 5 9 9 C 1.37699 * 120.31853 * 359.97438 * 8 7 6 10 10 C 1.39847 * 119.90343 * 0.02589 * 9 8 7 11 11 C 1.47534 * 120.20707 * 179.97438 * 10 9 8 12 12 O 1.21807 * 120.00274 * 179.97438 * 11 10 9 13 13 C 1.41832 * 119.99869 * 359.97438 * 11 10 9 14 14 H 1.08001 * 119.99998 * 6.79301 * 13 11 10 15 15 C 1.40320 * 119.99970 * 186.79291 * 13 11 10 16 16 N 1.30542 * 120.00230 * 353.86979 * 15 13 11 17 17 Si 1.86804 * 120.00024 * 173.86878 * 15 13 11 18 18 H 1.48501 * 109.47093 * 94.98582 * 17 15 13 19 19 H 1.48497 * 109.47415 * 214.98309 * 17 15 13 20 20 H 1.48499 * 109.47112 * 334.98580 * 17 15 13 21 21 C 1.53000 * 109.47017 * 119.99037 * 2 1 3 22 22 C 1.54272 * 110.03394 * 297.91537 * 21 2 1 23 23 C 1.54969 * 104.15925 * 217.13342 * 22 21 2 24 24 C 1.54889 * 102.77448 * 37.88473 * 23 22 21 25 25 C 1.53876 * 110.03639 * 180.69200 * 21 2 1 26 26 H 1.09006 * 109.46894 * 60.00662 * 1 2 3 27 27 H 1.08997 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47889 * 300.00761 * 1 2 3 29 29 H 1.08005 * 119.94976 * 0.03221 * 6 5 4 30 30 H 1.08001 * 119.78931 * 179.97438 * 7 6 5 31 31 H 1.07998 * 119.84069 * 179.72113 * 8 7 6 32 32 H 1.07999 * 120.04797 * 179.97438 * 9 8 7 33 33 H 0.96996 * 120.00025 * 180.02562 * 16 15 13 34 34 H 1.09002 * 110.01686 * 59.29826 * 21 2 1 35 35 H 1.09003 * 110.47988 * 335.77757 * 22 21 2 36 36 H 1.08996 * 110.48727 * 98.42330 * 22 21 2 37 37 H 1.08995 * 110.72071 * 279.57378 * 23 22 21 38 38 H 1.08999 * 110.91949 * 156.28985 * 23 22 21 39 39 H 1.09009 * 110.48544 * 203.40685 * 24 23 22 40 40 H 1.09005 * 110.60067 * 80.81935 * 24 23 22 41 41 H 1.08996 * 110.03090 * 238.57288 * 25 21 2 42 42 H 1.08999 * 110.02958 * 0.02562 * 25 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.1115 0.0607 -2.3021 6 6 1.6630 1.3726 -2.3273 7 6 1.7703 2.1188 -3.4842 8 6 2.3262 1.5653 -4.6279 9 6 2.7779 0.2645 -4.6216 10 6 2.6759 -0.5034 -3.4573 11 6 3.1573 -1.8979 -3.4433 12 8 3.0670 -2.5632 -2.4270 13 6 3.7253 -2.4638 -4.6132 14 1 3.9064 -1.8447 -5.4794 15 6 4.0518 -3.8281 -4.6452 16 7 3.9456 -4.5503 -3.5630 17 14 4.6387 -4.6109 -6.2366 18 1 6.1233 -4.6177 -6.2668 19 1 4.1356 -6.0058 -6.3171 20 1 4.1236 -3.8316 -7.3910 21 6 2.0399 -0.7210 1.2494 22 6 1.5764 0.0261 2.5170 23 6 2.7744 -0.1014 3.4916 24 6 3.9972 0.0387 2.5514 25 6 3.5785 -0.7135 1.2713 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8898 29 1 1.2293 1.8114 -1.4408 30 1 1.4190 3.1400 -3.4985 31 1 2.4013 2.1559 -5.5289 32 1 3.2097 -0.1623 -5.5148 33 1 4.1717 -5.4933 -3.5851 34 1 1.6713 -1.7467 1.2648 35 1 1.3784 1.0739 2.2911 36 1 0.6897 -0.4488 2.9369 37 1 2.7723 -1.0759 3.9799 38 1 2.7617 0.6995 4.2308 39 1 4.8765 -0.4269 2.9970 40 1 4.1930 1.0880 2.3305 41 1 3.9565 -1.7355 1.2981 42 1 3.9619 -0.1958 0.3921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233523417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:42 Heat of formation + Delta-G solvation = -72.492391 kcal Electronic energy + Delta-G solvation = -23265.366576 eV Core-core repulsion = 19981.804499 eV Total energy + Delta-G solvation = -3283.562077 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.151 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.86642 -38.20914 -36.53766 -35.90437 -32.60536 -31.94258 -30.46471 -29.09825 -28.45633 -27.44880 -26.60705 -23.14014 -22.78215 -21.02928 -20.51898 -19.79299 -19.13517 -17.48113 -16.48297 -15.85089 -15.38634 -15.37478 -14.67493 -14.53400 -14.41209 -13.75414 -13.41419 -13.26339 -13.16911 -12.73187 -12.51549 -12.33775 -12.04139 -11.60638 -11.41046 -11.30183 -11.21714 -11.02983 -10.97246 -10.88850 -10.84196 -10.77822 -10.59301 -10.43480 -10.25653 -10.10659 -10.01790 -9.91614 -8.89189 -8.14404 -7.35866 -7.28789 -6.19060 -4.77619 1.86205 2.13644 3.09235 3.17250 3.21009 3.80225 4.07076 4.14226 4.69753 4.71980 4.73412 4.88728 5.17537 5.29456 5.33126 5.41793 5.48915 5.57438 5.66109 5.70093 5.75019 5.76625 5.81539 5.87465 5.91874 5.93688 5.96966 6.01068 6.14481 6.21324 6.27512 6.36434 6.39183 6.45085 6.64577 6.66016 6.76523 6.99831 7.00889 7.22121 7.35034 7.55335 8.13047 8.25212 8.89983 8.95719 10.43135 10.67048 Molecular weight = 288.15amu Principal moments of inertia in cm(-1) A = 0.015476 B = 0.005294 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.773956 B = 5287.545025 C = 6537.098838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.082 3.918 3 H 0.064 0.936 4 O -0.260 6.260 5 C 0.154 3.846 6 C -0.232 4.232 7 C -0.093 4.093 8 C -0.178 4.178 9 C -0.059 4.059 10 C -0.139 4.139 11 C 0.392 3.608 12 O -0.516 6.516 13 C -0.524 4.524 14 H 0.071 0.929 15 C 0.082 3.918 16 N -0.739 5.739 17 Si 0.902 3.098 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.083 4.083 22 C -0.115 4.115 23 C -0.124 4.124 24 C -0.126 4.126 25 C -0.115 4.115 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.134 0.866 33 H 0.272 0.728 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.727 10.357 7.500 13.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.025 3.975 3 H 0.082 0.918 4 O -0.172 6.172 5 C 0.107 3.893 6 C -0.250 4.250 7 C -0.112 4.112 8 C -0.197 4.197 9 C -0.077 4.077 10 C -0.141 4.141 11 C 0.285 3.715 12 O -0.403 6.403 13 C -0.555 4.555 14 H 0.089 0.911 15 C -0.141 4.141 16 N -0.368 5.368 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.101 4.101 22 C -0.152 4.152 23 C -0.161 4.161 24 C -0.164 4.164 25 C -0.152 4.152 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.151 0.849 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.736 9.674 8.164 13.198 hybrid contribution 0.112 0.039 -0.996 1.003 sum -3.623 9.713 7.167 12.603 Atomic orbital electron populations 1.22385 0.95896 1.03262 1.02021 1.22481 0.93611 0.96017 0.85411 0.91765 1.86513 1.79414 1.35989 1.15257 1.19416 0.93521 0.89330 0.87061 1.21121 1.09368 0.94830 0.99720 1.20801 0.98931 0.98632 0.92791 1.20929 1.04264 0.96330 0.98130 1.21398 0.96014 0.92686 0.97609 1.21559 1.01111 1.00736 0.90681 1.17978 0.80951 0.83044 0.89484 1.90545 1.54782 1.60981 1.33966 1.20889 1.39216 0.94460 1.00955 0.91065 1.25938 0.93637 0.97578 0.96899 1.69974 1.31941 1.07149 1.27718 0.86433 0.79424 0.78847 0.82663 1.19602 1.20216 1.18532 1.21773 0.96258 1.00296 0.91811 1.22408 0.97970 1.00148 0.94695 1.22493 0.94941 1.01432 0.97256 1.22407 0.97644 1.00282 0.96048 1.22087 0.94426 1.01357 0.97349 0.92135 0.91442 0.91619 0.86305 0.87061 0.86881 0.84875 0.91738 0.89898 0.91650 0.91533 0.91499 0.91888 0.91895 0.92056 0.91185 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 8.97 37.16 0.33 -2.21 16 2 C 0.08 1.35 1.45 -26.73 -0.04 1.31 16 3 H 0.06 0.99 6.29 -51.93 -0.33 0.66 16 4 O -0.26 -5.81 7.35 -40.43 -0.30 -6.11 16 5 C 0.15 3.40 6.62 -38.61 -0.26 3.14 16 6 C -0.23 -4.17 8.24 -39.48 -0.33 -4.49 16 7 C -0.09 -1.53 10.03 -39.47 -0.40 -1.93 16 8 C -0.18 -3.08 10.02 -39.61 -0.40 -3.48 16 9 C -0.06 -1.22 9.43 -39.18 -0.37 -1.59 16 10 C -0.14 -3.40 5.90 -104.69 -0.62 -4.02 16 11 C 0.39 11.40 6.90 -34.42 -0.24 11.16 16 12 O -0.52 -16.62 13.74 -16.74 -0.23 -16.85 16 13 C -0.52 -14.68 8.83 -37.43 -0.33 -15.01 16 14 H 0.07 1.81 6.07 -52.49 -0.32 1.49 16 15 C 0.08 2.24 5.49 -17.32 -0.10 2.15 16 16 N -0.74 -21.63 11.76 55.57 0.65 -20.97 16 17 Si 0.90 19.62 29.57 -169.99 -5.03 14.59 16 18 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 21 C -0.08 -1.26 2.72 -89.50 -0.24 -1.50 16 22 C -0.11 -1.31 5.31 -25.03 -0.13 -1.44 16 23 C -0.12 -1.33 6.91 -24.70 -0.17 -1.50 16 24 C -0.13 -1.56 6.83 -25.07 -0.17 -1.73 16 25 C -0.11 -1.84 6.23 -25.61 -0.16 -2.00 16 26 H 0.06 0.87 6.93 -51.93 -0.36 0.51 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.74 7.22 -51.93 -0.38 0.36 16 29 H 0.12 1.82 5.44 -52.48 -0.29 1.54 16 30 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.13 2.65 6.22 -52.49 -0.33 2.32 16 33 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.06 0.69 7.72 -51.93 -0.40 0.29 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.07 1.24 7.44 -51.93 -0.39 0.85 16 LS Contribution 336.50 15.07 5.07 5.07 Total: -1.00 -33.06 336.50 -9.58 -42.64 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.14 Total: 4.75 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -3.61 Total: -23.13 kcal Atomic # 7 Polarization: -21.63 SS G_CDS: 0.65 Total: -20.97 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.53 Total: -22.96 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.03 Total: 14.59 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.06 -9.58 -42.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.852 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds