Wall clock time and date at job start Tue Mar 31 2020 06:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46920 * 2 1 4 4 O 1.42899 * 109.47539 * 239.99285 * 2 1 3 5 5 C 1.35633 * 116.99720 * 84.95555 * 4 2 1 6 6 C 1.38666 * 120.16589 * 354.75771 * 5 4 2 7 7 C 1.38086 * 120.09411 * 180.02562 * 6 5 4 8 8 C 1.38687 * 120.41836 * 359.97438 * 7 6 5 9 9 C 1.37699 * 120.31853 * 359.97438 * 8 7 6 10 10 C 1.39847 * 119.90343 * 0.02589 * 9 8 7 11 11 C 1.47534 * 120.20707 * 179.97438 * 10 9 8 12 12 O 1.21807 * 120.00274 * 179.97438 * 11 10 9 13 13 C 1.41832 * 119.99869 * 359.97438 * 11 10 9 14 14 H 1.08001 * 119.99998 * 6.79301 * 13 11 10 15 15 C 1.40320 * 119.99970 * 186.79291 * 13 11 10 16 16 N 1.30542 * 120.00230 * 353.86979 * 15 13 11 17 17 Si 1.86804 * 120.00024 * 173.86878 * 15 13 11 18 18 H 1.48501 * 109.47093 * 94.98582 * 17 15 13 19 19 H 1.48497 * 109.47415 * 214.98309 * 17 15 13 20 20 H 1.48499 * 109.47112 * 334.98580 * 17 15 13 21 21 C 1.53000 * 109.47017 * 119.99037 * 2 1 3 22 22 C 1.54272 * 110.03394 * 297.91537 * 21 2 1 23 23 C 1.54969 * 104.15925 * 217.13342 * 22 21 2 24 24 C 1.54889 * 102.77448 * 37.88473 * 23 22 21 25 25 C 1.53876 * 110.03639 * 180.69200 * 21 2 1 26 26 H 1.09006 * 109.46894 * 60.00662 * 1 2 3 27 27 H 1.08997 * 109.47187 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47889 * 300.00761 * 1 2 3 29 29 H 1.08005 * 119.94976 * 0.03221 * 6 5 4 30 30 H 1.08001 * 119.78931 * 179.97438 * 7 6 5 31 31 H 1.07998 * 119.84069 * 179.72113 * 8 7 6 32 32 H 1.07999 * 120.04797 * 179.97438 * 9 8 7 33 33 H 0.96996 * 120.00025 * 180.02562 * 16 15 13 34 34 H 1.09002 * 110.01686 * 59.29826 * 21 2 1 35 35 H 1.09003 * 110.47988 * 335.77757 * 22 21 2 36 36 H 1.08996 * 110.48727 * 98.42330 * 22 21 2 37 37 H 1.08995 * 110.72071 * 279.57378 * 23 22 21 38 38 H 1.08999 * 110.91949 * 156.28985 * 23 22 21 39 39 H 1.09009 * 110.48544 * 203.40685 * 24 23 22 40 40 H 1.09005 * 110.60067 * 80.81935 * 24 23 22 41 41 H 1.08996 * 110.03090 * 238.57288 * 25 21 2 42 42 H 1.08999 * 110.02958 * 0.02562 * 25 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.1115 0.0607 -2.3021 6 6 1.6630 1.3726 -2.3273 7 6 1.7703 2.1188 -3.4842 8 6 2.3262 1.5653 -4.6279 9 6 2.7779 0.2645 -4.6216 10 6 2.6759 -0.5034 -3.4573 11 6 3.1573 -1.8979 -3.4433 12 8 3.0670 -2.5632 -2.4270 13 6 3.7253 -2.4638 -4.6132 14 1 3.9064 -1.8447 -5.4794 15 6 4.0518 -3.8281 -4.6452 16 7 3.9456 -4.5503 -3.5630 17 14 4.6387 -4.6109 -6.2366 18 1 6.1233 -4.6177 -6.2668 19 1 4.1356 -6.0058 -6.3171 20 1 4.1236 -3.8316 -7.3910 21 6 2.0399 -0.7210 1.2494 22 6 1.5764 0.0261 2.5170 23 6 2.7744 -0.1014 3.4916 24 6 3.9972 0.0387 2.5514 25 6 3.5785 -0.7135 1.2713 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8898 29 1 1.2293 1.8114 -1.4408 30 1 1.4190 3.1400 -3.4985 31 1 2.4013 2.1559 -5.5289 32 1 3.2097 -0.1623 -5.5148 33 1 4.1717 -5.4933 -3.5851 34 1 1.6713 -1.7467 1.2648 35 1 1.3784 1.0739 2.2911 36 1 0.6897 -0.4488 2.9369 37 1 2.7723 -1.0759 3.9799 38 1 2.7617 0.6995 4.2308 39 1 4.8765 -0.4269 2.9970 40 1 4.1930 1.0880 2.3305 41 1 3.9565 -1.7355 1.2981 42 1 3.9619 -0.1958 0.3921 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233523417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:41 Heat of formation + Delta-G solvation = -90.880266 kcal Electronic energy + Delta-G solvation = -23266.163934 eV Core-core repulsion = 19981.804499 eV Total energy + Delta-G solvation = -3284.359435 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 288.151 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.33115 -39.56743 -38.22007 -37.63796 -34.72070 -33.22952 -32.09456 -30.56569 -29.60702 -28.72019 -28.49185 -24.56128 -24.40907 -22.45516 -21.64493 -21.39038 -20.48442 -18.99419 -18.43161 -17.41221 -17.02174 -16.56660 -16.11691 -15.98025 -15.86137 -15.24704 -14.96332 -14.83478 -14.37274 -14.29217 -14.14351 -13.74997 -13.48934 -13.26193 -13.05800 -12.80116 -12.71060 -12.61369 -12.25971 -12.16591 -12.06996 -11.98633 -11.95723 -11.88362 -11.72482 -11.49165 -11.38546 -11.23975 -10.96162 -9.71353 -9.44302 -8.93064 -8.27474 -6.99529 0.28143 0.63655 1.35736 1.37315 1.53627 2.21472 2.30417 2.44429 2.93053 3.55973 3.63774 3.78166 3.80985 3.96333 4.03522 4.09918 4.14668 4.26397 4.33491 4.50870 4.55713 4.57827 4.60929 4.63230 4.70519 4.77329 4.79600 4.88914 4.95986 5.03386 5.08560 5.16225 5.18836 5.23628 5.24275 5.35796 5.39759 5.45250 5.48116 5.56756 5.72964 5.98037 6.09884 6.72136 6.75604 6.94235 8.35201 8.57117 Molecular weight = 288.15amu Principal moments of inertia in cm(-1) A = 0.015476 B = 0.005294 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.773956 B = 5287.545025 C = 6537.098838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.073 3.927 3 H 0.081 0.919 4 O -0.304 6.304 5 C 0.135 3.865 6 C -0.227 4.227 7 C -0.072 4.072 8 C -0.171 4.171 9 C -0.064 4.064 10 C -0.199 4.199 11 C 0.368 3.632 12 O -0.571 6.571 13 C -0.554 4.554 14 H 0.090 0.910 15 C 0.024 3.976 16 N -0.794 5.794 17 Si 0.993 3.007 18 H -0.259 1.259 19 H -0.269 1.269 20 H -0.245 1.245 21 C -0.085 4.085 22 C -0.104 4.104 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.118 4.118 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.150 0.850 30 H 0.164 0.836 31 H 0.156 0.844 32 H 0.131 0.869 33 H 0.278 0.722 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.035 0.965 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.732 13.924 7.057 16.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.017 3.983 3 H 0.098 0.902 4 O -0.217 6.217 5 C 0.089 3.911 6 C -0.246 4.246 7 C -0.089 4.089 8 C -0.189 4.189 9 C -0.082 4.082 10 C -0.201 4.201 11 C 0.265 3.735 12 O -0.463 6.463 13 C -0.585 4.585 14 H 0.108 0.892 15 C -0.194 4.194 16 N -0.424 5.424 17 Si 0.812 3.188 18 H -0.184 1.184 19 H -0.194 1.194 20 H -0.168 1.168 21 C -0.104 4.104 22 C -0.142 4.142 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.156 4.156 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.167 0.833 30 H 0.181 0.819 31 H 0.173 0.827 32 H 0.149 0.851 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.746 13.271 7.714 16.067 hybrid contribution 0.409 -0.976 -0.832 1.346 sum -4.337 12.296 6.882 14.743 Atomic orbital electron populations 1.22341 0.93933 1.02565 1.03869 1.22842 0.95141 0.96414 0.83854 0.90169 1.86472 1.80064 1.38367 1.16803 1.19666 0.93959 0.91013 0.86510 1.21454 1.08418 0.92922 1.01764 1.21432 0.95897 1.00393 0.91210 1.21348 1.02566 0.94762 1.00213 1.21469 0.96344 0.94208 0.96181 1.21267 1.05549 0.99413 0.93861 1.18733 0.80354 0.85310 0.89085 1.90480 1.57056 1.63180 1.35543 1.21405 1.39786 0.95753 1.01548 0.89181 1.27237 0.92923 0.97887 1.01358 1.70143 1.33293 1.07869 1.31051 0.85079 0.79142 0.77714 0.76906 1.18363 1.19391 1.16767 1.21836 0.95275 0.99492 0.93790 1.22410 0.98768 1.00724 0.92257 1.22501 0.93180 1.02645 0.97128 1.22383 0.98857 1.00249 0.94202 1.22062 0.95610 0.99572 0.98371 0.92165 0.93483 0.87651 0.83291 0.81863 0.82677 0.85113 0.91129 0.92855 0.89563 0.89870 0.91554 0.88845 0.91472 0.90740 0.94577 0.94652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.69 8.97 71.98 0.65 -4.05 16 2 C 0.07 2.46 1.45 30.59 0.04 2.51 16 3 H 0.08 2.37 6.29 -2.39 -0.02 2.36 16 4 O -0.30 -14.59 7.35 -68.58 -0.50 -15.10 16 5 C 0.14 6.21 6.62 22.90 0.15 6.36 16 6 C -0.23 -7.70 8.24 22.34 0.18 -7.52 16 7 C -0.07 -2.04 10.03 22.34 0.22 -1.81 16 8 C -0.17 -5.36 10.02 22.25 0.22 -5.14 16 9 C -0.06 -2.66 9.43 22.53 0.21 -2.44 16 10 C -0.20 -10.29 5.90 -19.91 -0.12 -10.41 16 11 C 0.37 23.15 6.90 25.61 0.18 23.32 16 12 O -0.57 -40.45 13.74 16.18 0.22 -40.23 16 13 C -0.55 -32.85 8.83 23.67 0.21 -32.64 16 14 H 0.09 4.77 6.07 -2.91 -0.02 4.75 16 15 C 0.02 1.35 5.49 85.39 0.47 1.82 16 16 N -0.79 -49.64 11.76 21.88 0.26 -49.38 16 17 Si 0.99 41.40 29.57 68.60 2.03 43.42 16 18 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 19 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 20 H -0.24 -9.44 7.11 99.48 0.71 -8.73 16 21 C -0.09 -2.70 2.72 -10.07 -0.03 -2.73 16 22 C -0.10 -2.15 5.31 31.70 0.17 -1.98 16 23 C -0.12 -2.25 6.91 31.91 0.22 -2.03 16 24 C -0.12 -2.91 6.83 31.67 0.22 -2.69 16 25 C -0.12 -4.13 6.23 31.32 0.20 -3.94 16 26 H 0.06 1.65 6.93 -2.38 -0.02 1.63 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.10 2.03 7.22 -2.39 -0.02 2.01 16 29 H 0.15 4.05 5.44 -2.91 -0.02 4.03 16 30 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 31 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 32 H 0.13 5.29 6.22 -2.91 -0.02 5.27 16 33 H 0.28 15.59 8.29 -92.71 -0.77 14.83 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.09 1.46 7.72 -2.39 -0.02 1.44 16 36 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.03 1.42 7.44 -2.39 -0.02 1.40 16 Total: -1.00 -82.92 336.50 6.21 -76.71 By element: Atomic # 1 Polarization: 26.92 SS G_CDS: 1.01 Total: 27.94 kcal Atomic # 6 Polarization: -46.55 SS G_CDS: 3.20 Total: -43.36 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.26 Total: -49.38 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -0.28 Total: -55.33 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -82.92 6.21 -76.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233523417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.173 kcal (2) G-P(sol) polarization free energy of solvation -82.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds